Wall clock time and date at job start Tue Mar 31 2020 15:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47664 * 2 1 4 4 C 1.53002 * 109.47253 * 239.99487 * 2 1 3 5 5 C 1.50699 * 109.47263 * 174.99999 * 4 2 1 6 6 C 1.38234 * 120.00639 * 100.00442 * 5 4 2 7 7 C 1.38216 * 120.01494 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.02667 * 359.96105 * 7 6 5 9 9 C 1.38195 * 120.01144 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.00778 * 280.27819 * 5 4 2 11 11 Cl 1.73604 * 120.01692 * 0.02562 * 10 5 4 12 12 N 1.46506 * 109.46992 * 120.00317 * 2 1 3 13 13 C 1.34779 * 119.99629 * 274.99550 * 12 2 1 14 14 O 1.21286 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00073 * 180.02562 * 13 12 2 16 16 C 1.52995 * 109.47321 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47460 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47460 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47321 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99438 * 359.97438 * 19 18 17 21 21 C 1.37868 * 120.00365 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00662 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99923 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47454 * 89.99733 * 23 21 19 25 25 H 1.48500 * 109.46919 * 210.00241 * 23 21 19 26 26 H 1.48505 * 109.46901 * 329.99595 * 23 21 19 27 27 H 1.09005 * 109.47723 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46989 * 300.00117 * 1 2 3 29 29 H 1.08999 * 109.46969 * 60.00102 * 1 2 3 30 30 H 1.09001 * 109.46517 * 55.00338 * 4 2 1 31 31 H 1.08997 * 109.47540 * 295.00487 * 4 2 1 32 32 H 1.08001 * 119.99159 * 0.02562 * 6 5 4 33 33 H 1.08007 * 119.98628 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.99339 * 180.02562 * 8 7 6 35 35 H 1.08002 * 120.00237 * 180.02562 * 9 8 7 36 36 H 0.96995 * 120.00238 * 94.99964 * 12 2 1 37 37 H 1.09002 * 109.46481 * 300.00328 * 15 13 12 38 38 H 1.08993 * 109.46823 * 59.99983 * 15 13 12 39 39 H 1.08999 * 109.47054 * 300.00181 * 16 15 13 40 40 H 1.09003 * 109.47229 * 59.99987 * 16 15 13 41 41 H 1.09000 * 109.46898 * 300.00616 * 17 16 15 42 42 H 1.09003 * 109.46801 * 59.99859 * 17 16 15 43 43 H 1.08999 * 109.47054 * 300.00314 * 18 17 16 44 44 H 1.09003 * 109.47229 * 60.00121 * 18 17 16 45 45 H 0.96994 * 120.00493 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3280 -1.6753 -0.9018 7 6 5.7055 -1.5778 -0.9595 8 6 6.2981 -0.4201 -1.4288 9 6 5.5133 0.6405 -1.8401 10 6 4.1342 0.5457 -1.7767 11 17 3.1479 1.8806 -2.2856 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7286 3.5875 16 6 2.7007 0.2543 4.7589 17 6 3.2106 -0.4669 6.0082 18 6 3.2608 0.5159 7.1797 19 6 3.7636 -0.1944 8.4100 20 1 4.0212 -1.2421 8.3613 21 6 3.8949 0.4933 9.5978 22 7 4.3342 -0.1264 10.6714 23 14 3.4487 2.3053 9.6822 24 1 2.0160 2.4459 10.0463 25 1 4.2883 2.9745 10.7081 26 1 3.6874 2.9360 8.3591 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -0.2618 -2.1369 31 1 1.7516 -1.7716 -1.2056 32 1 3.8656 -2.5801 -0.5357 33 1 6.3192 -2.4063 -0.6380 34 1 7.3745 -0.3446 -1.4740 35 1 5.9763 1.5445 -2.2071 36 1 2.2489 -1.6318 1.1526 37 1 1.9776 -1.5509 3.8325 38 1 3.6491 -1.1204 3.3979 39 1 3.3727 1.0769 4.5140 40 1 1.7012 0.6458 4.9483 41 1 2.5383 -1.2892 6.2527 42 1 4.2100 -0.8587 5.8190 43 1 3.9328 1.3385 6.9353 44 1 2.2612 0.9073 7.3687 45 1 4.4261 0.3573 11.5071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805164545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:32 Heat of formation + Delta-G solvation = -75.728384 kcal Electronic energy + Delta-G solvation = -24265.466569 eV Core-core repulsion = 20692.371560 eV Total energy + Delta-G solvation = -3573.095009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.07676 -40.19012 -37.40112 -37.31983 -36.51793 -34.59839 -33.55433 -32.14061 -31.64780 -31.05761 -27.63956 -27.46678 -24.24327 -23.68920 -22.90058 -21.86809 -21.58858 -21.22976 -18.85194 -18.10569 -17.80408 -17.31615 -16.83845 -16.41093 -16.34900 -16.16688 -15.59841 -15.04182 -14.92641 -14.78150 -14.67952 -14.59861 -13.99987 -13.83884 -13.67303 -13.49334 -13.35433 -13.08190 -12.95963 -12.84557 -12.54269 -12.43550 -12.32765 -12.21098 -12.06614 -11.85954 -11.75750 -11.61531 -11.49875 -11.34142 -11.25918 -10.76149 -10.72467 -10.06602 -9.83001 -9.58503 -8.29856 -6.32696 0.20778 0.32586 1.18599 1.34258 1.35755 1.48653 1.73492 2.26672 2.35639 2.68121 3.05591 3.62389 3.81020 3.84145 3.96862 4.04812 4.12703 4.16529 4.29402 4.34353 4.42573 4.45514 4.62598 4.66540 4.68745 4.70855 4.78274 4.80460 4.86485 4.89332 5.02873 5.11154 5.15467 5.21761 5.26446 5.28548 5.33377 5.41890 5.51328 5.59237 5.63916 5.66108 5.69028 5.90442 6.29639 6.64216 6.75218 7.32232 7.37027 8.86743 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002405 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.419692 B =11638.316930 C =12071.534211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.061 0.939 4 C -0.083 4.083 5 C -0.083 4.083 6 C -0.105 4.105 7 C -0.116 4.116 8 C -0.119 4.119 9 C -0.126 4.126 10 C -0.054 4.054 11 Cl -0.080 7.080 12 N -0.711 5.711 13 C 0.512 3.488 14 O -0.587 6.587 15 C -0.131 4.131 16 C -0.097 4.097 17 C -0.093 4.093 18 C -0.017 4.017 19 C -0.529 4.529 20 H 0.038 0.962 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.946 3.054 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.254 1.254 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.415 0.585 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.012 0.988 44 H 0.012 0.988 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -5.471 -34.275 34.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.121 4.121 5 C -0.083 4.083 6 C -0.123 4.123 7 C -0.134 4.134 8 C -0.137 4.137 9 C -0.145 4.145 10 C -0.080 4.080 11 Cl -0.051 7.051 12 N -0.364 5.364 13 C 0.300 3.700 14 O -0.467 6.467 15 C -0.170 4.170 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.054 4.054 19 C -0.568 4.568 20 H 0.057 0.943 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.769 3.231 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.178 1.178 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.252 0.748 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.377 -4.494 -34.135 34.512 hybrid contribution 0.082 0.824 0.593 1.019 sum -2.295 -3.670 -33.542 33.820 Atomic orbital electron populations 1.22129 0.94334 1.03231 1.01979 1.20884 0.94383 0.96764 0.83956 0.92081 1.20962 0.89934 1.03699 0.97491 1.19886 0.96905 0.92641 0.98906 1.21382 0.93706 0.98546 0.98702 1.21636 0.95380 0.98488 0.97898 1.21444 1.01116 0.92900 0.98223 1.21277 0.91571 1.00654 1.00969 1.21100 0.92183 0.90160 1.04582 1.98365 1.70651 1.46534 1.89571 1.45949 1.67136 1.14531 1.08759 1.21121 0.76405 0.86836 0.85632 1.90689 1.51830 1.18419 1.85788 1.21670 1.04666 0.99595 0.91106 1.21265 1.00885 0.97693 0.93674 1.21331 1.00582 0.97956 0.93150 1.19575 0.95743 0.96057 0.94067 1.21543 1.43162 0.97287 0.94759 0.94326 1.25965 0.94685 1.03256 0.95264 1.70052 1.48724 1.38805 1.01546 0.85721 0.78779 0.79891 0.78660 1.19195 1.20659 1.17796 0.90267 0.94541 0.90587 0.88612 0.86977 0.82354 0.83063 0.83467 0.84755 0.74814 0.86493 0.86848 0.93453 0.93117 0.92312 0.92460 0.96998 0.96999 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.78 16 2 C 0.14 2.43 2.50 44.99 0.11 2.55 16 3 H 0.06 1.47 6.70 -2.39 -0.02 1.46 16 4 C -0.08 -0.91 4.34 29.85 0.13 -0.78 16 5 C -0.08 -1.14 4.87 -19.84 -0.10 -1.24 16 6 C -0.11 -1.08 9.67 22.26 0.22 -0.87 16 7 C -0.12 -1.24 10.05 22.27 0.22 -1.02 16 8 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 9 C -0.13 -2.01 9.83 22.29 0.22 -1.79 16 10 C -0.05 -0.94 6.31 22.32 0.14 -0.80 16 11 Cl -0.08 -1.49 26.63 -2.72 -0.07 -1.57 16 12 N -0.71 -11.79 4.79 -442.52 -2.12 -13.91 16 13 C 0.51 13.00 7.79 87.66 0.68 13.68 16 14 O -0.59 -20.96 15.65 -3.05 -0.05 -21.01 16 15 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 16 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 17 C -0.09 -3.59 5.15 30.59 0.16 -3.43 16 18 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 19 C -0.53 -31.38 9.66 25.60 0.25 -31.14 16 20 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 21 C 0.00 0.30 5.47 84.65 0.46 0.76 16 22 N -0.95 -60.73 13.96 21.44 0.30 -60.43 16 23 Si 0.95 46.40 27.47 68.60 1.88 48.29 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.25 -11.95 6.54 99.48 0.65 -11.30 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.04 0.78 8.14 -2.38 -0.02 0.77 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.03 7.37 -2.39 -0.02 1.02 16 31 H 0.11 0.57 8.00 -2.39 -0.02 0.55 16 32 H 0.16 0.64 8.04 -2.91 -0.02 0.62 16 33 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.41 3.83 8.60 -92.71 -0.80 3.04 16 37 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 40 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 44 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -78.22 385.80 3.89 -74.33 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.12 Total: 8.07 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.83 Total: -33.77 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.82 Total: -74.34 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.57 kcal Total: -78.22 3.89 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805164545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.399 kcal (2) G-P(sol) polarization free energy of solvation -78.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds