Wall clock time and date at job start Tue Mar 31 2020 15:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35726 * 116.99876 * 2 1 4 4 C 1.39356 * 120.35869 * 0.02562 * 3 2 1 5 5 N 1.31295 * 120.87776 * 180.02562 * 4 3 2 6 6 C 1.32884 * 121.71787 * 0.02562 * 5 4 3 7 7 C 1.47762 * 119.68675 * 179.97438 * 6 5 4 8 8 O 1.21563 * 120.00346 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99875 * 359.97438 * 7 6 5 10 10 C 1.47424 * 125.64751 * 359.97438 * 9 7 6 11 11 C 1.54913 * 104.83373 * 155.91265 * 10 9 7 12 12 C 1.55159 * 101.58256 * 37.00666 * 11 10 9 13 13 H 1.09000 * 110.72025 * 205.96109 * 12 11 10 14 14 N 1.46496 * 110.71892 * 82.86063 * 12 11 10 15 15 C 1.36945 * 119.99718 * 88.84511 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47487 * 125.59501 * 179.97438 * 9 7 6 24 24 H 1.08999 * 109.96659 * 300.33278 * 23 9 7 25 25 C 1.53001 * 110.02701 * 61.64698 * 23 9 7 26 26 C 1.39721 * 120.63046 * 0.25340 * 6 5 4 27 27 F 1.35092 * 120.46673 * 179.74931 * 26 6 5 28 28 C 1.38693 * 119.06085 * 359.49590 * 26 6 5 29 29 H 1.08996 * 109.46944 * 59.99964 * 1 2 3 30 30 H 1.09006 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46938 * 299.99521 * 1 2 3 32 32 H 1.07995 * 119.55908 * 0.04369 * 4 3 2 33 33 H 1.09004 * 110.37299 * 37.07240 * 10 9 7 34 34 H 1.08997 * 110.36565 * 274.74575 * 10 9 7 35 35 H 1.08997 * 111.00141 * 278.93407 * 11 10 9 36 36 H 1.09001 * 111.03857 * 155.09522 * 11 10 9 37 37 H 0.96996 * 120.00499 * 268.84242 * 14 12 11 38 38 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46878 * 177.61103 * 25 23 9 40 40 H 1.09002 * 109.47576 * 297.60711 * 25 23 9 41 41 H 1.08995 * 109.47363 * 57.61277 * 25 23 9 42 42 H 1.08001 * 120.77980 * 180.24884 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 0.0005 5 7 1.8789 3.5580 0.0000 6 6 3.2022 3.6793 -0.0015 7 6 3.8137 5.0244 -0.0026 8 8 5.0237 5.1421 -0.0044 9 7 3.0301 6.1210 -0.0025 10 6 1.5559 6.1234 -0.0020 11 6 1.1617 7.4913 0.6091 12 6 2.2567 8.4214 0.0230 13 1 2.4179 9.2831 0.6707 14 7 1.9002 8.8524 -1.3310 15 6 1.1519 9.9846 -1.5144 16 1 0.8243 10.5594 -0.6608 17 6 0.8146 10.3933 -2.7973 18 7 1.2135 9.6925 -3.8376 19 14 -0.2067 11.9373 -3.0474 20 1 -0.4278 12.1547 -4.4996 21 1 -1.5162 11.7805 -2.3649 22 1 0.5125 13.1043 -2.4765 23 6 3.5067 7.5167 -0.0030 24 1 4.1169 7.7020 0.8810 25 6 4.3216 7.7917 -1.2684 26 6 4.0209 2.5471 -0.0080 27 9 5.3658 2.6743 -0.0146 28 6 3.4332 1.2908 -0.0021 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2151 2.3247 0.0017 33 1 1.1753 5.3089 0.6143 34 1 1.1760 6.0393 -1.0202 35 1 1.2148 7.4628 1.6974 36 1 0.1699 7.7974 0.2762 37 1 2.1942 8.3360 -2.0976 38 1 0.9775 9.9779 -4.7341 39 1 4.6332 8.8362 -1.2800 40 1 5.2024 7.1497 -1.2801 41 1 3.7098 7.5854 -2.1465 42 1 4.0395 0.3970 -0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986357416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:52 Heat of formation + Delta-G solvation = -40.300648 kcal Electronic energy + Delta-G solvation = -27774.547312 eV Core-core repulsion = 23671.111846 eV Total energy + Delta-G solvation = -4103.435466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.12202 -41.12881 -39.80867 -38.37872 -37.24624 -33.96697 -32.77047 -31.63658 -30.80663 -30.51428 -28.75277 -27.97796 -25.22515 -24.84272 -23.73846 -23.31386 -22.21119 -20.22624 -18.98709 -18.82990 -18.09399 -17.42228 -16.98892 -16.61964 -16.43125 -16.05521 -15.76457 -15.35143 -15.11011 -14.64535 -14.33705 -13.89039 -13.79888 -13.70311 -13.36745 -13.12827 -13.01612 -12.77575 -12.56665 -12.36042 -12.16362 -11.99572 -11.64545 -11.18910 -10.96286 -10.91440 -10.75095 -10.55104 -10.29164 -10.13166 -9.88611 -9.86561 -9.56075 -9.46023 -8.92582 -8.89866 -8.19135 -6.98486 -5.78501 -3.07795 0.30884 0.64189 2.47312 2.67254 3.11463 3.42955 3.47832 3.48647 3.58156 3.81351 3.92692 4.09301 4.39765 4.55465 4.57266 4.59527 4.66493 4.91545 5.02465 5.17570 5.24540 5.38105 5.45986 5.56472 5.68249 5.78881 5.86836 5.93547 6.01623 6.14731 6.37103 6.44488 6.52063 6.59138 6.63679 6.68573 6.85029 6.91216 7.07038 7.29740 7.68686 7.86022 8.36666 8.40189 9.51321 10.07503 10.42679 11.43739 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003312 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.708483 B = 8452.575299 C = 9430.408104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.127 3.873 4 C 0.006 3.994 5 N -0.382 5.382 6 C 0.018 3.982 7 C 0.579 3.421 8 O -0.533 6.533 9 N -0.585 5.585 10 C 0.110 3.890 11 C -0.163 4.163 12 C 0.171 3.829 13 H 0.068 0.932 14 N -0.714 5.714 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.292 1.292 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.126 3.874 24 H 0.073 0.927 25 C -0.150 4.150 26 C 0.153 3.847 27 F -0.098 7.098 28 C -0.161 4.161 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 -19.975 9.920 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.215 6.215 3 C 0.078 3.922 4 C -0.156 4.156 5 N -0.093 5.093 6 C -0.121 4.121 7 C 0.366 3.634 8 O -0.410 6.410 9 N -0.317 5.317 10 C -0.013 4.013 11 C -0.205 4.205 12 C 0.059 3.941 13 H 0.086 0.914 14 N -0.357 5.357 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.213 1.213 22 H -0.213 1.213 23 C 0.023 3.977 24 H 0.091 0.909 25 C -0.208 4.208 26 C 0.130 3.870 27 F -0.076 7.076 28 C -0.188 4.188 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.207 -19.216 9.881 21.641 hybrid contribution -0.214 -0.096 -0.542 0.591 sum -1.422 -19.311 9.339 21.498 Atomic orbital electron populations 1.23270 0.76939 1.04951 1.02306 1.86055 1.22475 1.25542 1.87435 1.20015 0.92047 0.86089 0.94041 1.23193 1.01272 0.86579 1.04539 1.67906 1.09261 1.25773 1.06351 1.21361 0.89384 0.94152 1.07251 1.17091 0.85726 0.82242 0.78381 1.90827 1.12871 1.85846 1.51484 1.48544 1.08291 1.05324 1.69517 1.22581 0.78353 0.98451 1.01868 1.23571 1.02286 0.95908 0.98706 1.21201 0.89897 0.93623 0.89340 0.91414 1.42565 1.62839 1.29330 1.00935 1.19195 1.25050 1.00981 0.92121 0.91100 1.24736 1.01297 0.99107 0.95511 1.69658 1.50317 1.40218 0.97699 0.86271 0.80112 0.83107 0.76676 1.21786 1.21291 1.21275 1.22148 0.96970 0.79648 0.98890 0.90885 1.21920 0.99512 1.01931 0.97412 1.18222 0.78759 0.92691 0.97295 1.91644 1.27202 1.96413 1.92324 1.20793 0.92892 0.97650 1.07463 0.91669 0.87443 0.91768 0.81027 0.89072 0.91282 0.92312 0.89523 0.77497 0.93424 0.91298 0.92651 0.91555 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.34 10.50 -18.88 -0.20 -2.54 16 3 C 0.13 1.19 6.72 -38.87 -0.26 0.93 16 4 C 0.01 0.06 10.21 -17.37 -0.18 -0.12 16 5 N -0.38 -5.03 6.57 -9.63 -0.06 -5.09 16 6 C 0.02 0.27 6.72 -82.96 -0.56 -0.29 16 7 C 0.58 10.49 7.63 -12.37 -0.09 10.40 16 8 O -0.53 -10.90 14.37 5.31 0.08 -10.82 16 9 N -0.58 -10.38 3.08 -163.80 -0.50 -10.89 16 10 C 0.11 1.81 5.91 -2.53 -0.01 1.79 16 11 C -0.16 -2.76 6.77 -24.58 -0.17 -2.93 16 12 C 0.17 3.33 3.46 -66.10 -0.23 3.10 16 13 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 14 N -0.71 -17.17 4.61 -51.65 -0.24 -17.41 16 15 C -0.24 -6.46 9.97 -15.06 -0.15 -6.61 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.33 3.45 -66.70 -0.23 2.10 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 C -0.15 -2.95 8.48 37.16 0.32 -2.63 16 26 C 0.15 2.07 7.31 -38.86 -0.28 1.79 16 27 F -0.10 -1.48 15.54 2.25 0.03 -1.44 16 28 C -0.16 -1.66 10.10 -39.11 -0.40 -2.05 16 29 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 30 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 32 H 0.17 1.12 6.31 -52.49 -0.33 0.79 16 33 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.39 10.09 5.58 -40.82 -0.23 9.86 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.05 1.09 6.93 -51.93 -0.36 0.73 16 41 H 0.07 1.45 6.21 -51.93 -0.32 1.13 16 42 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -32.35 348.03 -6.56 -38.91 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.27 Total: 7.80 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.35 Total: 6.18 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.08 Total: -60.21 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.12 Total: -13.36 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.35 -6.56 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986357416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.390 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds