Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 C 1.53004 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46804 * 178.77839 * 4 3 2 6 6 C 1.46896 * 110.99928 * 294.88458 * 5 4 3 7 7 C 1.50700 * 109.47269 * 292.20045 * 6 5 4 8 8 H 1.08000 * 120.00286 * 359.15095 * 7 6 5 9 9 C 1.37877 * 119.99925 * 179.14783 * 7 6 5 10 10 N 1.31512 * 120.00027 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00177 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47339 * 89.99949 * 11 9 7 13 13 H 1.48502 * 109.46983 * 210.00083 * 11 9 7 14 14 H 1.48504 * 109.46831 * 329.99450 * 11 9 7 15 15 C 1.46892 * 111.00222 * 58.84285 * 5 4 3 16 16 H 1.08993 * 109.69602 * 299.99440 * 15 5 4 17 17 C 1.53409 * 109.73079 * 60.57179 * 15 5 4 18 18 O 1.42826 * 108.36640 * 184.45408 * 17 15 5 19 19 C 1.35868 * 117.85201 * 310.79539 * 18 17 15 20 20 C 1.39142 * 118.47770 * 197.08294 * 19 18 17 21 21 C 1.37966 * 120.23234 * 180.20216 * 20 19 18 22 22 C 1.38390 * 119.94449 * 0.02562 * 21 20 19 23 23 Cl 1.73593 * 120.02175 * 179.97438 * 22 21 20 24 24 C 1.38204 * 119.95637 * 359.91794 * 22 21 20 25 25 C 1.38363 * 121.80246 * 17.16527 * 19 18 17 26 26 C 1.50774 * 121.41390 * 359.66030 * 25 19 18 27 27 H 1.08997 * 109.46835 * 59.99605 * 1 2 3 28 28 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46581 * 300.00002 * 1 2 3 30 30 H 1.09005 * 109.47180 * 240.00192 * 2 1 3 31 31 H 1.09001 * 109.47255 * 119.99792 * 2 1 3 32 32 H 1.08998 * 109.47132 * 59.99864 * 3 2 1 33 33 H 1.09004 * 109.47202 * 300.00338 * 3 2 1 34 34 H 1.08995 * 109.47065 * 58.77371 * 4 3 2 35 35 H 1.08999 * 109.46361 * 298.77660 * 4 3 2 36 36 H 1.08996 * 109.47220 * 52.20575 * 6 5 4 37 37 H 1.09000 * 109.47201 * 172.20616 * 6 5 4 38 38 H 0.96999 * 120.00530 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.68714 * 304.17960 * 17 15 5 40 40 H 1.09001 * 109.68332 * 64.74413 * 17 15 5 41 41 H 1.08001 * 119.88110 * 0.22372 * 20 19 18 42 42 H 1.07999 * 120.02436 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.84726 * 180.02562 * 24 22 21 44 44 H 1.09000 * 109.43738 * 257.61386 * 26 25 19 45 45 H 1.08991 * 109.43776 * 137.74032 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8272 -0.0302 6 6 3.6905 3.4893 -1.2884 7 6 4.4457 2.8573 -2.4291 8 1 5.1416 2.0541 -2.2368 9 6 4.2482 3.3044 -3.7183 10 7 4.9068 2.7525 -4.7139 11 14 3.0449 4.6940 -4.0510 12 1 3.7573 5.9947 -3.9738 13 1 2.4608 4.5292 -5.4063 14 1 1.9601 4.6627 -3.0374 15 6 3.5667 3.5847 1.1278 16 1 2.4769 3.6014 1.1189 17 6 4.0632 2.9310 2.4238 18 8 3.4838 3.6259 3.5289 19 6 3.5628 4.9823 3.5378 20 6 3.3416 5.6519 4.7373 21 6 3.4087 7.0291 4.7867 22 6 3.6963 7.7482 3.6399 23 17 3.7805 9.4811 3.6996 24 6 3.9175 7.0859 2.4472 25 6 3.8531 5.7033 2.3931 26 6 4.1050 5.0167 1.0746 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9099 -0.8796 35 1 3.9337 0.9476 0.8999 36 1 2.6192 3.3789 -1.4564 37 1 3.9417 4.5483 -1.2290 38 1 4.7682 3.0672 -5.6209 39 1 3.7586 1.8847 2.4474 40 1 5.1498 2.9990 2.4763 41 1 3.1171 5.0916 5.6329 42 1 3.2369 7.5453 5.7196 43 1 4.1422 7.6489 1.5534 44 1 5.1765 4.9941 0.8763 45 1 3.6008 5.5643 0.2785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257965864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = -26.238817 kcal Electronic energy + Delta-G solvation = -25622.025022 eV Core-core repulsion = 22051.076041 eV Total energy + Delta-G solvation = -3570.948981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86161 -38.36735 -37.41550 -36.26771 -34.52203 -33.16458 -32.31240 -30.27608 -29.92705 -28.85600 -26.50080 -25.71657 -23.61346 -22.95246 -22.37711 -21.27849 -20.67131 -18.78295 -17.82889 -17.13031 -16.63326 -16.46865 -15.34559 -15.18369 -14.77141 -14.73390 -14.29124 -14.19879 -13.85349 -13.56951 -13.55759 -13.37765 -13.17407 -12.64469 -12.55110 -12.47367 -12.27722 -12.00183 -11.78765 -11.40534 -11.36682 -11.01051 -10.92883 -10.89057 -10.81710 -10.65333 -10.61838 -10.53530 -10.15072 -9.91087 -9.83319 -9.33609 -8.98413 -8.61968 -8.15062 -7.49497 -6.11235 -4.08475 1.08776 1.11384 2.05444 3.21353 3.22427 3.30377 3.31595 3.49941 4.34801 4.37587 4.60191 4.68676 4.80374 4.94096 5.04984 5.14914 5.18389 5.21743 5.25237 5.31979 5.40245 5.46749 5.62501 5.65962 5.71254 5.76721 5.87716 5.93555 5.95173 6.02580 6.06469 6.08843 6.11831 6.23983 6.29004 6.33137 6.42859 6.44151 6.52470 6.70975 6.85542 6.94424 7.31968 7.50737 7.73827 7.90167 8.56775 8.97423 9.50254 11.01803 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.004077 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.789571 B = 6866.266044 C = 8672.264222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.159 4.159 4 C 0.059 3.941 5 N -0.514 5.514 6 C 0.156 3.844 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.868 3.132 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.045 3.955 16 H 0.052 0.948 17 C 0.066 3.934 18 O -0.314 6.314 19 C 0.139 3.861 20 C -0.140 4.140 21 C -0.084 4.084 22 C -0.068 4.068 23 Cl -0.078 7.078 24 C -0.075 4.075 25 C -0.135 4.135 26 C -0.077 4.077 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.058 0.942 36 H -0.004 1.004 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 4.144 17.774 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.237 5.237 6 C 0.030 3.970 7 C -0.545 4.545 8 H 0.099 0.901 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.193 1.193 15 C -0.065 4.065 16 H 0.069 0.931 17 C -0.009 4.009 18 O -0.227 6.227 19 C 0.093 3.907 20 C -0.159 4.159 21 C -0.102 4.102 22 C -0.095 4.095 23 Cl -0.049 7.049 24 C -0.093 4.093 25 C -0.137 4.137 26 C -0.114 4.114 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.014 0.986 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.114 0.886 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.558 4.170 17.737 18.782 hybrid contribution -1.450 1.072 -0.700 1.934 sum -6.009 5.242 17.038 18.811 Atomic orbital electron populations 1.21771 0.96527 1.00999 1.01540 1.21421 0.95282 0.97110 1.01809 1.22278 0.98705 0.96879 1.01968 1.22192 0.91666 0.90656 1.02354 1.62261 1.58105 1.01626 1.01750 1.20310 0.94874 0.94870 0.86972 1.20965 1.24431 1.19987 0.89153 0.90079 1.24856 0.95652 0.96388 0.96161 1.69877 1.41976 1.42181 0.99686 0.86971 0.82204 0.83359 0.77910 1.20102 1.21146 1.19281 1.22171 0.97914 0.93755 0.92616 0.93056 1.23158 0.98362 0.95796 0.83548 1.86003 1.75151 1.15366 1.46150 1.18812 0.95771 0.83200 0.92908 1.20498 1.05654 0.93273 0.96463 1.20744 0.99190 0.92934 0.97361 1.20674 1.08820 0.84345 0.95653 1.98353 1.97123 1.10670 1.98771 1.20826 0.98377 0.93117 0.97010 1.19962 1.04822 0.93504 0.95392 1.20677 1.03577 0.94439 0.92664 0.92828 0.93174 0.93239 0.91664 0.92532 0.92856 0.91063 0.88891 0.92380 0.98602 0.95531 0.92623 0.87134 0.90747 0.84442 0.84607 0.84648 0.88574 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.58 5.93 -26.73 -0.16 -1.73 16 3 C -0.16 -2.48 4.53 -26.73 -0.12 -2.61 16 4 C 0.06 1.00 4.83 -3.82 -0.02 0.98 16 5 N -0.51 -9.55 4.56 -227.79 -1.04 -10.59 16 6 C 0.16 3.46 3.44 -4.98 -0.02 3.44 16 7 C -0.51 -13.53 9.00 -34.44 -0.31 -13.84 16 8 H 0.08 2.37 7.53 -52.49 -0.40 1.97 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 11 Si 0.87 20.77 27.48 -169.99 -4.67 16.09 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.17 6.52 56.52 0.37 -5.80 16 15 C 0.04 0.71 1.72 -67.47 -0.12 0.59 16 16 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 17 C 0.07 0.90 6.21 37.37 0.23 1.14 16 18 O -0.31 -4.36 10.27 -19.33 -0.20 -4.56 16 19 C 0.14 1.88 6.47 -39.20 -0.25 1.62 16 20 C -0.14 -1.59 9.93 -39.35 -0.39 -1.98 16 21 C -0.08 -0.89 9.83 -39.62 -0.39 -1.28 16 22 C -0.07 -0.81 6.32 -39.54 -0.25 -1.06 16 23 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 24 C -0.07 -0.96 9.45 -39.49 -0.37 -1.33 16 25 C -0.14 -1.88 5.75 -104.44 -0.60 -2.48 16 26 C -0.08 -1.17 4.43 -27.81 -0.12 -1.29 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.79 6.45 -51.93 -0.34 0.46 16 33 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 34 H 0.09 1.81 6.88 -51.93 -0.36 1.46 16 35 H 0.06 0.84 6.31 -51.93 -0.33 0.51 16 36 H 0.00 -0.08 5.09 -51.93 -0.26 -0.35 16 37 H 0.03 0.59 5.41 -51.93 -0.28 0.31 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 1.37 6.28 -51.93 -0.33 1.04 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.09 1.38 6.83 -51.93 -0.35 1.02 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -28.44 362.08 -10.49 -38.93 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.69 Total: 2.31 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.62 Total: -19.41 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.27 Total: -36.47 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.44 -10.49 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257965864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds