Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 C 1.53004 * 109.47502 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46804 * 178.77839 * 4 3 2 6 6 C 1.46896 * 110.99928 * 294.88458 * 5 4 3 7 7 C 1.50700 * 109.47269 * 292.20045 * 6 5 4 8 8 H 1.08000 * 120.00286 * 359.15095 * 7 6 5 9 9 C 1.37877 * 119.99925 * 179.14783 * 7 6 5 10 10 N 1.31512 * 120.00027 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00177 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47339 * 89.99949 * 11 9 7 13 13 H 1.48502 * 109.46983 * 210.00083 * 11 9 7 14 14 H 1.48504 * 109.46831 * 329.99450 * 11 9 7 15 15 C 1.46892 * 111.00222 * 58.84285 * 5 4 3 16 16 H 1.08993 * 109.69602 * 299.99440 * 15 5 4 17 17 C 1.53409 * 109.73079 * 60.57179 * 15 5 4 18 18 O 1.42826 * 108.36640 * 184.45408 * 17 15 5 19 19 C 1.35868 * 117.85201 * 310.79539 * 18 17 15 20 20 C 1.39142 * 118.47770 * 197.08294 * 19 18 17 21 21 C 1.37966 * 120.23234 * 180.20216 * 20 19 18 22 22 C 1.38390 * 119.94449 * 0.02562 * 21 20 19 23 23 Cl 1.73593 * 120.02175 * 179.97438 * 22 21 20 24 24 C 1.38204 * 119.95637 * 359.91794 * 22 21 20 25 25 C 1.38363 * 121.80246 * 17.16527 * 19 18 17 26 26 C 1.50774 * 121.41390 * 359.66030 * 25 19 18 27 27 H 1.08997 * 109.46835 * 59.99605 * 1 2 3 28 28 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46581 * 300.00002 * 1 2 3 30 30 H 1.09005 * 109.47180 * 240.00192 * 2 1 3 31 31 H 1.09001 * 109.47255 * 119.99792 * 2 1 3 32 32 H 1.08998 * 109.47132 * 59.99864 * 3 2 1 33 33 H 1.09004 * 109.47202 * 300.00338 * 3 2 1 34 34 H 1.08995 * 109.47065 * 58.77371 * 4 3 2 35 35 H 1.08999 * 109.46361 * 298.77660 * 4 3 2 36 36 H 1.08996 * 109.47220 * 52.20575 * 6 5 4 37 37 H 1.09000 * 109.47201 * 172.20616 * 6 5 4 38 38 H 0.96999 * 120.00530 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.68714 * 304.17960 * 17 15 5 40 40 H 1.09001 * 109.68332 * 64.74413 * 17 15 5 41 41 H 1.08001 * 119.88110 * 0.22372 * 20 19 18 42 42 H 1.07999 * 120.02436 * 180.02562 * 21 20 19 43 43 H 1.07995 * 119.84726 * 180.02562 * 24 22 21 44 44 H 1.09000 * 109.43738 * 257.61386 * 26 25 19 45 45 H 1.08991 * 109.43776 * 137.74032 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8272 -0.0302 6 6 3.6905 3.4893 -1.2884 7 6 4.4457 2.8573 -2.4291 8 1 5.1416 2.0541 -2.2368 9 6 4.2482 3.3044 -3.7183 10 7 4.9068 2.7525 -4.7139 11 14 3.0449 4.6940 -4.0510 12 1 3.7573 5.9947 -3.9738 13 1 2.4608 4.5292 -5.4063 14 1 1.9601 4.6627 -3.0374 15 6 3.5667 3.5847 1.1278 16 1 2.4769 3.6014 1.1189 17 6 4.0632 2.9310 2.4238 18 8 3.4838 3.6259 3.5289 19 6 3.5628 4.9823 3.5378 20 6 3.3416 5.6519 4.7373 21 6 3.4087 7.0291 4.7867 22 6 3.6963 7.7482 3.6399 23 17 3.7805 9.4811 3.6996 24 6 3.9175 7.0859 2.4472 25 6 3.8531 5.7033 2.3931 26 6 4.1050 5.0167 1.0746 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9099 -0.8796 35 1 3.9337 0.9476 0.8999 36 1 2.6192 3.3789 -1.4564 37 1 3.9417 4.5483 -1.2290 38 1 4.7682 3.0672 -5.6209 39 1 3.7586 1.8847 2.4474 40 1 5.1498 2.9990 2.4763 41 1 3.1171 5.0916 5.6329 42 1 3.2369 7.5453 5.7196 43 1 4.1422 7.6489 1.5534 44 1 5.1765 4.9941 0.8763 45 1 3.6008 5.5643 0.2785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257965864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -41.664627 kcal Electronic energy + Delta-G solvation = -25622.693935 eV Core-core repulsion = 22051.076041 eV Total energy + Delta-G solvation = -3571.617894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92708 -39.58985 -38.52448 -37.17753 -35.68483 -34.91523 -33.78211 -31.41108 -31.06365 -30.30688 -27.98020 -26.91857 -24.79986 -24.25744 -23.59861 -22.49181 -21.96185 -20.11167 -19.00163 -18.78040 -17.96112 -17.51207 -16.59064 -16.52000 -16.20221 -15.92797 -15.67476 -15.45523 -15.01762 -14.81838 -14.67183 -14.55584 -14.39206 -14.15459 -13.84113 -13.62168 -13.42120 -13.19616 -13.15583 -12.83691 -12.62471 -12.40267 -12.32406 -12.14848 -12.00791 -11.91466 -11.83446 -11.73108 -11.62355 -11.36165 -11.32910 -11.15686 -10.75659 -9.93563 -9.13552 -9.00580 -8.27720 -6.28872 0.14144 0.17879 1.15490 1.31134 1.32867 1.41521 2.19533 2.32030 2.54209 3.04236 3.07720 3.51430 3.61052 3.75321 3.85708 3.98876 4.02672 4.07583 4.15698 4.27932 4.30066 4.41935 4.51893 4.53996 4.55563 4.65682 4.72832 4.80971 4.83832 4.90124 4.93426 4.96316 5.02539 5.05452 5.08340 5.19164 5.20350 5.30222 5.33166 5.41289 5.48833 5.53220 5.56831 5.95756 6.24704 6.37920 6.60986 6.77447 7.33712 8.88812 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.004077 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.789571 B = 6866.266044 C = 8672.264222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.168 3.832 7 C -0.505 4.505 8 H 0.042 0.958 9 C 0.014 3.986 10 N -0.946 5.946 11 Si 0.932 3.068 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.254 1.254 15 C 0.049 3.951 16 H 0.047 0.953 17 C 0.074 3.926 18 O -0.314 6.314 19 C 0.121 3.879 20 C -0.134 4.134 21 C -0.074 4.074 22 C -0.073 4.073 23 Cl -0.070 7.070 24 C -0.084 4.084 25 C -0.148 4.148 26 C -0.074 4.074 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.089 0.911 36 H -0.007 1.007 37 H 0.030 0.970 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 5.142 20.762 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.188 4.188 4 C -0.067 4.067 5 N -0.248 5.248 6 C 0.041 3.959 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.184 4.184 10 N -0.588 5.588 11 Si 0.757 3.243 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.177 1.177 15 C -0.060 4.060 16 H 0.065 0.935 17 C -0.001 4.001 18 O -0.227 6.227 19 C 0.076 3.924 20 C -0.153 4.153 21 C -0.093 4.093 22 C -0.099 4.099 23 Cl -0.041 7.041 24 C -0.103 4.103 25 C -0.150 4.150 26 C -0.111 4.111 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.010 0.990 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.179 0.821 42 H 0.183 0.817 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.091 5.170 20.754 22.239 hybrid contribution -0.906 0.755 -1.541 1.941 sum -6.998 5.925 19.213 21.289 Atomic orbital electron populations 1.21752 0.95297 1.02124 1.01431 1.21413 0.96360 0.95422 1.02215 1.22159 0.97409 0.98331 1.00948 1.22177 0.92770 0.89574 1.02181 1.62122 1.58911 1.02490 1.01312 1.20007 0.93700 0.94772 0.87400 1.21198 1.23546 1.18739 0.90871 0.94010 1.25685 0.97596 0.99116 0.95965 1.70028 1.44215 1.44300 1.00216 0.85935 0.80227 0.80230 0.77948 1.19056 1.20986 1.17745 1.22176 0.97608 0.93917 0.92317 0.93479 1.23090 0.98395 0.96307 0.82294 1.86001 1.75350 1.15676 1.45707 1.19070 0.96682 0.83079 0.93586 1.20800 1.04411 0.93642 0.96430 1.21091 0.97449 0.92735 0.98002 1.20811 1.08493 0.84891 0.95728 1.98358 1.97067 1.09974 1.98743 1.20888 0.98745 0.92866 0.97758 1.19823 1.06420 0.93947 0.94803 1.20563 1.02635 0.94299 0.93606 0.94043 0.91466 0.92242 0.93057 0.90336 0.91547 0.94210 0.92410 0.89259 0.98965 0.95221 0.92580 0.85576 0.90685 0.82056 0.81712 0.84557 0.89744 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.12 -2.96 5.93 30.59 0.18 -2.78 16 3 C -0.15 -4.59 4.53 30.59 0.14 -4.45 16 4 C 0.06 2.06 4.83 86.30 0.42 2.48 16 5 N -0.52 -19.73 4.56 -874.61 -3.99 -23.71 16 6 C 0.17 7.62 3.44 85.56 0.29 7.92 16 7 C -0.51 -28.10 9.00 25.60 0.23 -27.87 16 8 H 0.04 2.59 7.53 -2.91 -0.02 2.57 16 9 C 0.01 0.79 5.47 84.65 0.46 1.25 16 10 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 11 Si 0.93 43.47 27.48 68.60 1.89 45.36 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 15 C 0.05 1.51 1.72 45.08 0.08 1.58 16 16 H 0.05 1.51 6.32 -2.39 -0.02 1.50 16 17 C 0.07 1.89 6.21 72.12 0.45 2.34 16 18 O -0.31 -7.97 10.27 -92.07 -0.95 -8.92 16 19 C 0.12 3.02 6.47 22.52 0.15 3.16 16 20 C -0.13 -2.61 9.93 22.42 0.22 -2.39 16 21 C -0.07 -1.33 9.83 22.24 0.22 -1.11 16 22 C -0.07 -1.55 6.32 22.30 0.14 -1.41 16 23 Cl -0.07 -1.39 28.96 -2.72 -0.08 -1.46 16 24 C -0.08 -2.05 9.45 22.33 0.21 -1.83 16 25 C -0.15 -3.96 5.75 -19.74 -0.11 -4.07 16 26 C -0.07 -2.25 4.43 29.90 0.13 -2.12 16 27 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.87 6.45 -2.39 -0.02 1.85 16 33 H 0.04 1.46 6.32 -2.39 -0.02 1.45 16 34 H 0.06 2.37 6.88 -2.39 -0.02 2.35 16 35 H 0.09 2.45 6.31 -2.39 -0.02 2.43 16 36 H -0.01 -0.33 5.09 -2.39 -0.01 -0.35 16 37 H 0.03 1.34 5.41 -2.39 -0.01 1.33 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.13 2.78 6.28 -2.39 -0.01 2.77 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 41 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 45 H 0.07 2.39 6.83 -2.39 -0.02 2.38 16 Total: -1.00 -63.39 362.08 2.02 -61.36 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.93 Total: 17.31 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 3.92 Total: -31.93 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.69 Total: -81.71 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.95 Total: -8.92 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.89 Total: 45.36 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.46 kcal Total: -63.39 2.02 -61.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257965864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.698 kcal (2) G-P(sol) polarization free energy of solvation -63.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds