Wall clock time and date at job start Tue Mar 31 2020 14:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47189 * 131.32684 * 3 2 1 5 5 C 1.36984 * 119.99676 * 272.55568 * 4 3 2 6 6 H 1.08001 * 119.99886 * 39.68799 * 5 4 3 7 7 C 1.38973 * 120.00071 * 219.68126 * 5 4 3 8 8 N 1.31416 * 120.00208 * 7.37037 * 7 5 4 9 9 Si 1.86801 * 120.00005 * 187.36375 * 7 5 4 10 10 H 1.48494 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46857 * 120.00554 * 9 7 5 12 12 H 1.48501 * 109.46924 * 239.99912 * 9 7 5 13 13 C 1.34780 * 120.00375 * 92.55539 * 4 3 2 14 14 O 1.21622 * 120.00204 * 185.78081 * 13 4 3 15 15 C 1.47358 * 119.99579 * 5.77828 * 13 4 3 16 16 C 1.41315 * 126.42194 * 331.41803 * 15 13 4 17 17 N 1.30452 * 108.02515 * 180.02562 * 16 15 13 18 18 N 1.39936 * 108.91412 * 359.74792 * 17 16 15 19 19 C 1.46500 * 125.75130 * 180.26933 * 18 17 16 20 20 C 1.34292 * 108.49433 * 0.42517 * 18 17 16 21 21 C 1.50701 * 126.29407 * 179.84574 * 20 18 17 22 22 C 1.50705 * 109.46757 * 89.69015 * 21 20 18 23 23 C 1.38233 * 119.99675 * 90.00169 * 22 21 20 24 24 C 1.38235 * 119.99836 * 180.02562 * 23 22 21 25 25 C 1.38233 * 119.99875 * 359.97438 * 24 23 22 26 26 C 1.38228 * 120.00328 * 0.25825 * 25 24 23 27 27 C 1.38233 * 120.00036 * 270.01832 * 22 21 20 28 28 H 4.40641 * 5.51349 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47588 * 11.32360 * 3 2 1 30 30 H 1.09008 * 109.46931 * 251.32040 * 3 2 1 31 31 H 0.96995 * 120.00631 * 183.24556 * 8 7 5 32 32 H 1.08001 * 125.99206 * 359.96295 * 16 15 13 33 33 H 1.08998 * 109.47238 * 270.18222 * 19 18 17 34 34 H 1.09000 * 109.46829 * 30.18480 * 19 18 17 35 35 H 1.08997 * 109.46713 * 150.17613 * 19 18 17 36 36 H 1.08999 * 109.47266 * 329.69005 * 21 20 18 37 37 H 1.09001 * 109.46929 * 209.69093 * 21 20 18 38 38 H 1.07999 * 120.00650 * 359.97438 * 23 22 21 39 39 H 1.08002 * 120.00062 * 179.97438 * 24 23 22 40 40 H 1.08008 * 120.00005 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.00648 * 179.72235 * 26 25 24 42 42 H 1.07999 * 119.99913 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.9129 -1.0372 5 6 3.3125 0.4610 -2.3180 6 1 2.5976 -0.2206 -2.7547 7 6 4.4135 0.8798 -3.0554 8 7 5.3574 1.5909 -2.4806 9 14 4.5518 0.4317 -4.8636 10 1 3.3672 -0.3675 -5.2675 11 1 4.6124 1.6722 -5.6777 12 1 5.7855 -0.3651 -5.0831 13 6 3.4070 2.1969 -0.7314 14 8 3.7107 2.9801 -1.6108 15 6 3.3376 2.6515 0.6686 16 6 2.5128 2.1176 1.6842 17 7 2.7384 2.7869 2.7810 18 7 3.7081 3.7628 2.5254 19 6 4.2404 4.7169 3.5015 20 6 4.0661 3.6797 1.2338 21 6 5.0808 4.5451 0.5319 22 6 6.4447 3.9145 0.6478 23 6 6.8787 3.0244 -0.3167 24 6 8.1295 2.4456 -0.2101 25 6 8.9464 2.7573 0.8606 26 6 8.5105 3.6437 1.8275 27 6 7.2614 4.2260 1.7186 28 1 -1.0502 -0.0001 0.0004 29 1 3.0098 -1.0068 -0.2018 30 1 3.0091 0.3300 0.9736 31 1 6.1022 1.9232 -3.0058 32 1 1.8167 1.2994 1.5719 33 1 3.6314 5.6209 3.4953 34 1 4.2177 4.2703 4.4956 35 1 5.2680 4.9691 3.2399 36 1 5.0968 5.5328 0.9926 37 1 4.8122 4.6392 -0.5203 38 1 6.2404 2.7805 -1.1530 39 1 8.4686 1.7498 -0.9634 40 1 9.9236 2.3048 0.9441 41 1 9.1468 3.8839 2.6664 42 1 6.9219 4.9209 2.4725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491020221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:45 Heat of formation + Delta-G solvation = 161.248528 kcal Electronic energy + Delta-G solvation = -27845.047164 eV Core-core repulsion = 24181.120751 eV Total energy + Delta-G solvation = -3663.926413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95791 -38.61539 -37.94956 -34.80779 -33.48963 -32.86687 -32.18502 -31.21103 -30.30264 -29.43490 -27.26423 -26.28769 -25.92616 -24.31856 -22.07553 -21.54837 -20.98874 -20.20620 -18.59605 -17.82096 -16.92432 -16.49012 -15.81066 -15.59285 -15.05578 -14.82215 -14.62960 -14.45229 -14.10693 -13.93551 -13.72152 -13.12367 -12.93743 -12.78469 -12.64232 -12.39376 -12.25202 -12.00988 -11.82748 -11.66789 -11.45006 -11.13546 -10.97765 -10.68955 -10.60768 -10.33432 -10.27732 -10.13669 -9.87666 -9.63831 -8.91712 -8.84071 -8.39443 -8.23504 -8.04014 -7.76066 -7.13910 -6.05900 -3.88427 1.74769 1.96632 2.24655 2.82300 2.98472 3.28218 3.30546 3.37335 3.39060 3.42158 4.28737 4.30885 4.65478 4.78033 5.01095 5.13421 5.18462 5.21566 5.22883 5.30390 5.36866 5.42925 5.43082 5.53086 5.60614 5.77523 5.97367 6.07074 6.09101 6.17549 6.25743 6.29625 6.37842 6.49535 6.52029 6.58504 6.78347 6.87349 7.03586 7.24030 7.28832 7.39481 7.56814 7.81928 8.10301 8.15114 8.29018 9.08262 9.20448 9.65828 10.38334 10.97055 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.006832 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.081123 B = 4097.121679 C = 6229.153057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.191 3.809 4 N -0.449 5.449 5 C -0.324 4.324 6 H 0.079 0.921 7 C 0.057 3.943 8 N -0.825 5.825 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.551 3.449 14 O -0.518 6.518 15 C -0.250 4.250 16 C 0.054 3.946 17 N -0.313 5.313 18 N -0.370 5.370 19 C 0.098 3.902 20 C 0.137 3.863 21 C -0.020 4.020 22 C -0.086 4.086 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.139 4.139 27 C -0.127 4.127 28 H 0.210 0.790 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.192 0.808 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.193 0.807 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 3.627 9.600 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.177 4.177 3 C 0.067 3.933 4 N -0.170 5.170 5 C -0.452 4.452 6 H 0.097 0.903 7 C -0.151 4.151 8 N -0.461 5.461 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.212 1.212 13 C 0.338 3.662 14 O -0.395 6.395 15 C -0.265 4.265 16 C -0.131 4.131 17 N -0.133 5.133 18 N -0.152 5.152 19 C -0.043 4.043 20 C 0.007 3.993 21 C -0.059 4.059 22 C -0.087 4.087 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.157 4.157 27 C -0.145 4.145 28 H 0.227 0.773 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.208 0.792 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.210 0.790 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.441 4.323 10.436 11.557 hybrid contribution 0.102 -0.392 -1.356 1.415 sum 2.543 3.931 9.079 10.216 Atomic orbital electron populations 1.24755 0.95749 1.02243 1.01868 1.24262 0.95490 0.98923 0.99051 1.18946 0.82740 0.97033 0.94610 1.43029 1.60359 1.06052 1.07595 1.19142 1.06805 1.30375 0.88829 0.90299 1.25149 0.94052 0.96510 0.99397 1.69472 1.09283 1.31967 1.35389 0.86021 0.77731 0.78005 0.83607 1.19825 1.20870 1.21177 1.16716 0.82463 0.82063 0.84921 1.90548 1.48269 1.52327 1.48321 1.20678 1.05535 1.02478 0.97775 1.24560 0.99535 0.99029 0.90005 1.77021 1.08676 1.03661 1.23991 1.48130 1.31998 1.27629 1.07418 1.21868 0.99181 0.90982 0.92294 1.21146 0.96557 0.97352 0.84274 1.19338 0.88667 0.94552 1.03337 1.19690 0.94492 0.98859 0.95663 1.22773 0.96114 0.91659 1.00666 1.21235 0.94807 0.99786 0.97852 1.21121 0.99504 0.98697 0.95356 1.20870 0.96409 0.99165 0.99306 1.20951 0.94910 1.00896 0.97712 0.77260 0.89150 0.88922 0.92902 0.79165 0.91070 0.89478 0.89685 0.91043 0.85869 0.79010 0.86450 0.87108 0.87094 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.74 19.25 29.55 0.57 -3.17 16 2 C -0.18 -3.30 11.51 -37.12 -0.43 -3.72 16 3 C 0.19 3.85 5.42 -6.83 -0.04 3.81 16 4 N -0.45 -11.04 2.52 -119.18 -0.30 -11.34 16 5 C -0.32 -8.53 9.31 -14.98 -0.14 -8.67 16 6 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 7 C 0.06 1.49 4.74 -17.46 -0.08 1.41 16 8 N -0.82 -21.70 7.84 55.50 0.44 -21.26 16 9 Si 0.92 20.80 29.56 -169.99 -5.03 15.77 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.55 13.83 6.66 -12.55 -0.08 13.74 16 14 O -0.52 -14.38 11.98 5.26 0.06 -14.31 16 15 C -0.25 -5.47 5.66 -105.07 -0.59 -6.06 16 16 C 0.05 1.06 9.54 -16.97 -0.16 0.90 16 17 N -0.31 -5.88 12.50 30.87 0.39 -5.49 16 18 N -0.37 -6.34 3.98 -63.32 -0.25 -6.59 16 19 C 0.10 1.15 11.06 59.85 0.66 1.81 16 20 C 0.14 2.65 6.24 -81.56 -0.51 2.14 16 21 C -0.02 -0.36 5.09 -29.03 -0.15 -0.51 16 22 C -0.09 -1.56 5.12 -104.62 -0.54 -2.09 16 23 C -0.09 -1.92 9.70 -39.58 -0.38 -2.30 16 24 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 26 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 27 C -0.13 -1.92 9.42 -39.58 -0.37 -2.29 16 28 H 0.21 2.58 7.80 -54.08 -0.42 2.16 16 29 H 0.09 1.72 8.06 -51.93 -0.42 1.30 16 30 H 0.09 1.77 4.60 -51.92 -0.24 1.54 16 31 H 0.26 6.60 8.09 -40.82 -0.33 6.27 16 32 H 0.19 3.49 4.27 -52.49 -0.22 3.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.87 5.27 -51.93 -0.27 0.59 16 36 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 37 H 0.12 2.55 6.38 -51.93 -0.33 2.22 16 38 H 0.19 4.50 4.09 -52.49 -0.21 4.28 16 39 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.32 6.07 -52.49 -0.32 1.00 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.67 349.14 -7.36 -39.03 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.49 Total: 11.29 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.44 Total: -12.36 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.27 Total: -44.69 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.06 Total: -14.31 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.67 -7.36 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.281 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds