Wall clock time and date at job start Tue Mar 31 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47189 * 131.32684 * 3 2 1 5 5 C 1.36984 * 119.99676 * 272.55568 * 4 3 2 6 6 H 1.08001 * 119.99886 * 39.68799 * 5 4 3 7 7 C 1.38973 * 120.00071 * 219.68126 * 5 4 3 8 8 N 1.31416 * 120.00208 * 7.37037 * 7 5 4 9 9 Si 1.86801 * 120.00005 * 187.36375 * 7 5 4 10 10 H 1.48494 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46857 * 120.00554 * 9 7 5 12 12 H 1.48501 * 109.46924 * 239.99912 * 9 7 5 13 13 C 1.34780 * 120.00375 * 92.55539 * 4 3 2 14 14 O 1.21622 * 120.00204 * 185.78081 * 13 4 3 15 15 C 1.47358 * 119.99579 * 5.77828 * 13 4 3 16 16 C 1.41315 * 126.42194 * 331.41803 * 15 13 4 17 17 N 1.30452 * 108.02515 * 180.02562 * 16 15 13 18 18 N 1.39936 * 108.91412 * 359.74792 * 17 16 15 19 19 C 1.46500 * 125.75130 * 180.26933 * 18 17 16 20 20 C 1.34292 * 108.49433 * 0.42517 * 18 17 16 21 21 C 1.50701 * 126.29407 * 179.84574 * 20 18 17 22 22 C 1.50705 * 109.46757 * 89.69015 * 21 20 18 23 23 C 1.38233 * 119.99675 * 90.00169 * 22 21 20 24 24 C 1.38235 * 119.99836 * 180.02562 * 23 22 21 25 25 C 1.38233 * 119.99875 * 359.97438 * 24 23 22 26 26 C 1.38228 * 120.00328 * 0.25825 * 25 24 23 27 27 C 1.38233 * 120.00036 * 270.01832 * 22 21 20 28 28 H 4.40641 * 5.51349 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47588 * 11.32360 * 3 2 1 30 30 H 1.09008 * 109.46931 * 251.32040 * 3 2 1 31 31 H 0.96995 * 120.00631 * 183.24556 * 8 7 5 32 32 H 1.08001 * 125.99206 * 359.96295 * 16 15 13 33 33 H 1.08998 * 109.47238 * 270.18222 * 19 18 17 34 34 H 1.09000 * 109.46829 * 30.18480 * 19 18 17 35 35 H 1.08997 * 109.46713 * 150.17613 * 19 18 17 36 36 H 1.08999 * 109.47266 * 329.69005 * 21 20 18 37 37 H 1.09001 * 109.46929 * 209.69093 * 21 20 18 38 38 H 1.07999 * 120.00650 * 359.97438 * 23 22 21 39 39 H 1.08002 * 120.00062 * 179.97438 * 24 23 22 40 40 H 1.08008 * 120.00005 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.00648 * 179.72235 * 26 25 24 42 42 H 1.07999 * 119.99913 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.9129 -1.0372 5 6 3.3125 0.4610 -2.3180 6 1 2.5976 -0.2206 -2.7547 7 6 4.4135 0.8798 -3.0554 8 7 5.3574 1.5909 -2.4806 9 14 4.5518 0.4317 -4.8636 10 1 3.3672 -0.3675 -5.2675 11 1 4.6124 1.6722 -5.6777 12 1 5.7855 -0.3651 -5.0831 13 6 3.4070 2.1969 -0.7314 14 8 3.7107 2.9801 -1.6108 15 6 3.3376 2.6515 0.6686 16 6 2.5128 2.1176 1.6842 17 7 2.7384 2.7869 2.7810 18 7 3.7081 3.7628 2.5254 19 6 4.2404 4.7169 3.5015 20 6 4.0661 3.6797 1.2338 21 6 5.0808 4.5451 0.5319 22 6 6.4447 3.9145 0.6478 23 6 6.8787 3.0244 -0.3167 24 6 8.1295 2.4456 -0.2101 25 6 8.9464 2.7573 0.8606 26 6 8.5105 3.6437 1.8275 27 6 7.2614 4.2260 1.7186 28 1 -1.0502 -0.0001 0.0004 29 1 3.0098 -1.0068 -0.2018 30 1 3.0091 0.3300 0.9736 31 1 6.1022 1.9232 -3.0058 32 1 1.8167 1.2994 1.5719 33 1 3.6314 5.6209 3.4953 34 1 4.2177 4.2703 4.4956 35 1 5.2680 4.9691 3.2399 36 1 5.0968 5.5328 0.9926 37 1 4.8122 4.6392 -0.5203 38 1 6.2404 2.7805 -1.1530 39 1 8.4686 1.7498 -0.9634 40 1 9.9236 2.3048 0.9441 41 1 9.1468 3.8839 2.6664 42 1 6.9219 4.9209 2.4725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:44 Heat of formation + Delta-G solvation = 143.656593 kcal Electronic energy + Delta-G solvation = -27845.810008 eV Core-core repulsion = 24181.120751 eV Total energy + Delta-G solvation = -3664.689257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42545 -39.89494 -39.73299 -36.53342 -34.91953 -34.49167 -33.59384 -32.89947 -31.58103 -30.85916 -28.75654 -27.84039 -27.22307 -26.10982 -23.37677 -23.08002 -22.37736 -21.71403 -20.13644 -19.33958 -18.56360 -17.84045 -17.45009 -17.05145 -16.55426 -16.29629 -16.02770 -15.79093 -15.67838 -15.51478 -15.34268 -14.51908 -14.38960 -14.12415 -14.03666 -13.67766 -13.54251 -13.45187 -13.31732 -13.20544 -12.95119 -12.84736 -12.73455 -12.50082 -12.06734 -11.93004 -11.77270 -11.56947 -11.39699 -11.07248 -10.82253 -10.21834 -9.92473 -9.66887 -9.54675 -9.30734 -9.06509 -7.99735 -5.89114 0.44349 0.67831 0.81406 1.38833 1.45424 1.49383 1.55583 1.57707 1.87587 1.97702 2.43902 2.93907 2.99394 3.33612 3.39091 3.72091 3.76706 3.77876 3.96335 3.98294 4.12351 4.26946 4.38004 4.44096 4.46767 4.50403 4.60296 4.63630 4.68585 4.76657 4.79567 4.86559 4.96094 5.11391 5.18598 5.26259 5.42212 5.50758 5.58164 5.64197 5.95238 5.96893 6.05585 6.26619 6.41221 6.63452 6.76986 7.14628 7.30742 7.75997 8.51220 8.99652 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.006832 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.081123 B = 4097.121679 C = 6229.153057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.229 4.229 3 C 0.195 3.805 4 N -0.463 5.463 5 C -0.349 4.349 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.833 5.833 9 Si 0.975 3.025 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.546 3.454 14 O -0.561 6.561 15 C -0.291 4.291 16 C 0.054 3.946 17 N -0.315 5.315 18 N -0.358 5.358 19 C 0.083 3.917 20 C 0.144 3.856 21 C -0.014 4.014 22 C -0.099 4.099 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.119 4.119 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.256 0.744 32 H 0.199 0.801 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 4.722 12.654 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.230 4.230 3 C 0.072 3.928 4 N -0.184 5.184 5 C -0.477 4.477 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.468 5.468 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.202 1.202 13 C 0.335 3.665 14 O -0.440 6.440 15 C -0.306 4.306 16 C -0.131 4.131 17 N -0.136 5.136 18 N -0.138 5.138 19 C -0.056 4.056 20 C 0.011 3.989 21 C -0.053 4.053 22 C -0.099 4.099 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.149 4.149 27 C -0.137 4.137 28 H 0.269 0.731 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.215 0.785 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.175 0.825 39 H 0.125 0.875 40 H 0.157 0.843 41 H 0.171 0.829 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.810 5.396 13.542 14.846 hybrid contribution -0.030 -0.672 -2.197 2.298 sum 2.781 4.724 11.345 12.600 Atomic orbital electron populations 1.25692 0.96532 0.99358 0.98939 1.24107 0.95649 1.01563 1.01711 1.18875 0.84167 0.96091 0.93669 1.43206 1.60466 1.06734 1.07955 1.19268 1.07050 1.30927 0.90430 0.90888 1.25920 0.94098 0.96687 1.02754 1.69695 1.09145 1.32004 1.35985 0.85163 0.78066 0.77236 0.79417 1.19127 1.21968 1.20230 1.17199 0.81314 0.81870 0.86122 1.90498 1.50092 1.53513 1.49930 1.20559 1.08350 1.04837 0.96848 1.24567 0.99539 0.99404 0.89573 1.76964 1.09201 1.04047 1.23366 1.48514 1.30648 1.27320 1.07352 1.22413 1.00587 0.90819 0.91818 1.21280 0.95976 0.96409 0.85220 1.19262 0.88400 0.96276 1.01338 1.19714 0.94887 0.98909 0.96421 1.22607 0.97085 0.94289 1.01331 1.21250 0.94900 1.00323 0.99212 1.21442 1.00115 0.98547 0.94305 1.21372 0.96425 0.97466 0.99651 1.21324 0.94557 1.00765 0.97037 0.73110 0.89190 0.88349 0.93436 0.78517 0.88530 0.87594 0.87646 0.87008 0.89728 0.82525 0.87536 0.84282 0.82929 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.85 19.25 74.32 1.43 -4.42 16 2 C -0.23 -8.66 11.51 31.13 0.36 -8.30 16 3 C 0.20 8.24 5.42 84.57 0.46 8.70 16 4 N -0.46 -24.04 2.52 -649.20 -1.64 -25.68 16 5 C -0.35 -19.41 9.31 84.06 0.78 -18.62 16 6 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 7 C 0.01 0.65 4.74 84.93 0.40 1.06 16 8 N -0.83 -46.89 7.84 21.67 0.17 -46.72 16 9 Si 0.98 44.79 29.56 68.60 2.03 46.82 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.55 29.00 6.66 86.64 0.58 29.58 16 14 O -0.56 -33.34 11.98 -4.10 -0.05 -33.39 16 15 C -0.29 -13.11 5.66 -20.15 -0.11 -13.22 16 16 C 0.05 2.13 9.54 85.65 0.82 2.95 16 17 N -0.31 -11.35 12.50 -56.26 -0.70 -12.05 16 18 N -0.36 -11.41 3.98 -354.24 -1.41 -12.82 16 19 C 0.08 1.56 11.06 127.77 1.41 2.97 16 20 C 0.14 5.50 6.24 42.15 0.26 5.77 16 21 C -0.01 -0.49 5.09 29.10 0.15 -0.35 16 22 C -0.10 -3.50 5.12 -19.87 -0.10 -3.61 16 23 C -0.14 -5.75 9.70 22.27 0.22 -5.53 16 24 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 25 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 26 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 27 C -0.12 -3.19 9.42 22.27 0.21 -2.98 16 28 H 0.25 5.26 7.80 -4.41 -0.03 5.23 16 29 H 0.09 3.65 8.06 -2.39 -0.02 3.63 16 30 H 0.10 3.95 4.60 -2.38 -0.01 3.93 16 31 H 0.26 14.01 8.09 -92.71 -0.75 13.26 16 32 H 0.20 7.29 4.27 -2.91 -0.01 7.27 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.11 1.57 5.27 -2.39 -0.01 1.55 16 36 H 0.11 2.91 7.66 -2.39 -0.02 2.89 16 37 H 0.08 3.72 6.38 -2.39 -0.02 3.70 16 38 H 0.16 7.95 4.09 -2.91 -0.01 7.94 16 39 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.15 2.71 6.07 -2.91 -0.02 2.69 16 Total: -1.00 -75.16 349.14 7.02 -68.14 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 1.09 Total: 33.10 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 7.53 Total: -17.41 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.58 Total: -97.27 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.05 Total: -33.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.16 7.02 -68.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.798 kcal (2) G-P(sol) polarization free energy of solvation -75.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds