Wall clock time and date at job start Tue Mar 31 2020 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46511 * 109.46917 * 236.44742 * 3 2 1 5 5 C 1.36716 * 119.99730 * 274.10345 * 4 3 2 6 6 H 1.07997 * 120.00266 * 131.21994 * 5 4 3 7 7 C 1.39152 * 119.99964 * 311.21322 * 5 4 3 8 8 N 1.31298 * 120.00141 * 2.22706 * 7 5 4 9 9 Si 1.86804 * 120.00174 * 182.22202 * 7 5 4 10 10 H 1.48501 * 109.46741 * 60.00338 * 9 7 5 11 11 H 1.48502 * 109.47089 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46984 * 300.00148 * 9 7 5 13 13 C 1.34774 * 119.99968 * 94.09872 * 4 3 2 14 14 O 1.21559 * 120.00023 * 4.50768 * 13 4 3 15 15 C 1.48110 * 119.99674 * 184.51413 * 13 4 3 16 16 C 1.39936 * 119.19800 * 173.43674 * 15 13 4 17 17 C 1.38481 * 119.55842 * 180.02562 * 16 15 13 18 18 N 1.38709 * 120.99638 * 180.02562 * 17 16 15 19 19 C 1.46900 * 110.99812 * 299.97475 * 18 17 16 20 20 C 1.46901 * 111.00171 * 63.92942 * 18 17 16 21 21 C 1.41554 * 118.00662 * 359.97438 * 17 16 15 22 22 C 1.40156 * 121.24324 * 180.02562 * 21 17 16 23 23 C 1.36259 * 119.67149 * 179.74498 * 22 21 17 24 24 C 1.39341 * 120.84823 * 0.25565 * 23 22 21 25 25 C 1.36056 * 121.04665 * 359.97438 * 24 23 22 26 26 C 1.40769 * 119.75353 * 0.02562 * 25 24 23 27 27 N 1.32137 * 119.20145 * 353.94582 * 15 13 4 28 28 H 4.40651 * 5.51450 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47124 * 116.44967 * 3 2 1 30 30 H 1.08996 * 109.47692 * 356.44582 * 3 2 1 31 31 H 0.96993 * 120.00297 * 179.97438 * 8 7 5 32 32 H 1.07999 * 120.22082 * 0.04041 * 16 15 13 33 33 H 1.08995 * 109.47427 * 63.95627 * 19 18 17 34 34 H 1.09004 * 109.47016 * 183.95862 * 19 18 17 35 35 H 1.09001 * 109.46873 * 303.95281 * 19 18 17 36 36 H 1.08995 * 109.47087 * 56.04931 * 20 18 17 37 37 H 1.09001 * 109.47137 * 176.04695 * 20 18 17 38 38 H 1.08993 * 109.47054 * 296.04632 * 20 18 17 39 39 H 1.08004 * 120.16319 * 0.02826 * 22 21 17 40 40 H 1.07994 * 119.57364 * 180.23144 * 23 22 21 41 41 H 1.08005 * 119.46981 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.12273 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7643 1.1512 5 6 3.2813 2.1204 1.0590 6 1 2.8766 2.7611 1.8285 7 6 3.9529 2.6752 -0.0261 8 7 4.4069 1.8997 -0.9835 9 14 4.2085 4.5232 -0.1210 10 1 4.9933 4.9753 1.0559 11 1 4.9454 4.8577 -1.3661 12 1 2.8896 5.2056 -0.1283 13 6 3.4375 0.1300 2.3009 14 8 3.3851 -1.0831 2.3580 15 6 3.8349 0.9111 3.4949 16 6 4.0119 0.2499 4.7154 17 6 4.3829 0.9730 5.8367 18 7 4.5671 0.3478 7.0611 19 6 3.3330 -0.3137 7.5054 20 6 5.6836 -0.6051 7.0031 21 6 4.5695 2.3690 5.6955 22 6 4.9454 3.1660 6.7854 23 6 5.1213 4.5061 6.6122 24 6 4.9272 5.0969 5.3653 25 6 4.5576 4.3543 4.2868 26 6 4.3662 2.9667 4.4266 27 7 4.0037 2.2170 3.3842 28 1 -1.0502 0.0000 -0.0003 29 1 3.0091 0.4585 -0.9201 30 1 3.0099 -1.0248 0.0637 31 1 4.8747 2.2864 -1.7400 32 1 3.8606 -0.8174 4.7824 33 1 3.0763 -1.1106 6.8075 34 1 3.4843 -0.7356 8.4990 35 1 2.5226 0.4145 7.5395 36 1 6.5847 -0.0892 6.6715 37 1 5.8513 -1.0291 7.9931 38 1 5.4433 -1.4040 6.3017 39 1 5.0993 2.7196 7.7567 40 1 5.4146 5.1181 7.4522 41 1 5.0732 6.1611 5.2530 42 1 4.4116 4.8277 3.3271 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491618928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:45 Heat of formation + Delta-G solvation = 99.086190 kcal Electronic energy + Delta-G solvation = -27205.885488 eV Core-core repulsion = 23539.263513 eV Total energy + Delta-G solvation = -3666.621974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11876 -40.46332 -38.94438 -37.48075 -37.07219 -34.24717 -33.30247 -33.06753 -31.65478 -30.59484 -28.60123 -28.58102 -26.97622 -26.24184 -24.84069 -24.01355 -22.27050 -21.28754 -20.10271 -19.03058 -18.80851 -18.44243 -17.69065 -16.99318 -16.63599 -16.30236 -16.17668 -15.91080 -15.87233 -15.59413 -15.00457 -14.92333 -14.84689 -14.74106 -14.25858 -14.10723 -13.88809 -13.32795 -13.30564 -13.10419 -13.00936 -12.72832 -12.71727 -12.49294 -12.45762 -12.31174 -12.10481 -11.51566 -11.20937 -11.17949 -11.01081 -10.87227 -10.14420 -9.79135 -9.72819 -9.40475 -9.07395 -8.25782 -6.08852 -0.71236 -0.29404 0.99849 1.39009 1.42843 1.53299 1.55363 1.75238 1.98372 2.32801 2.44246 2.62002 2.82150 3.06897 3.19075 3.41894 3.71727 3.75913 3.86768 3.96114 4.06749 4.23495 4.30716 4.33934 4.44973 4.47804 4.53287 4.57546 4.65074 4.68395 4.90398 4.91949 4.92830 5.11769 5.13441 5.15112 5.16658 5.41482 5.48168 5.56809 5.66084 5.73468 5.92434 5.96909 6.10126 6.48596 6.74402 6.90230 7.13246 7.38327 7.81934 8.75228 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.005678 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.238363 B = 4930.174980 C = 6755.129076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.220 4.220 3 C 0.195 3.805 4 N -0.417 5.417 5 C -0.301 4.301 6 H 0.109 0.891 7 C -0.001 4.001 8 N -0.908 5.908 9 Si 0.981 3.019 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.499 3.501 14 O -0.626 6.626 15 C 0.119 3.881 16 C -0.175 4.175 17 C 0.148 3.852 18 N -0.499 5.499 19 C 0.024 3.976 20 C 0.025 3.975 21 C -0.091 4.091 22 C -0.081 4.081 23 C -0.109 4.109 24 C -0.087 4.087 25 C -0.117 4.117 26 C 0.096 3.904 27 N -0.423 5.423 28 H 0.258 0.742 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.273 0.727 32 H 0.131 0.869 33 H 0.025 0.975 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.024 0.976 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 5.287 17.063 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.222 4.222 3 C 0.073 3.927 4 N -0.132 5.132 5 C -0.430 4.430 6 H 0.126 0.874 7 C -0.202 4.202 8 N -0.547 5.547 9 Si 0.804 3.196 10 H -0.180 1.180 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.288 3.712 14 O -0.514 6.514 15 C -0.033 4.033 16 C -0.199 4.199 17 C 0.045 3.955 18 N -0.220 5.220 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.136 4.136 26 C -0.028 4.028 27 N -0.134 5.134 28 H 0.274 0.726 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.149 0.851 33 H 0.043 0.957 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.043 0.957 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.180 0.820 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.073 5.530 16.442 17.380 hybrid contribution -0.125 -0.863 -0.911 1.261 sum 0.949 4.666 15.531 16.245 Atomic orbital electron populations 1.25643 0.96402 1.00611 0.99695 1.24284 0.95805 1.00704 1.01366 1.18653 0.83568 0.96346 0.94116 1.43488 1.52475 1.08095 1.09136 1.20021 1.33715 0.80456 1.08816 0.87399 1.26379 0.94360 1.04400 0.95015 1.69627 1.37230 1.37481 1.10409 0.85184 0.79021 0.77422 0.77959 1.17994 1.20826 1.18963 1.18779 0.81052 0.86308 0.85015 1.90557 1.60869 1.14394 1.85559 1.20962 0.98725 0.90456 0.93179 1.22378 1.03033 1.01536 0.92910 1.18958 0.95083 0.92326 0.89144 1.59473 1.07800 1.32141 1.22539 1.22596 0.90085 0.97741 1.01771 1.22591 0.92441 0.93511 1.03581 1.19036 1.02019 0.93007 0.95381 1.21192 0.97048 0.93790 0.97915 1.21424 0.98390 0.94764 0.98097 1.21309 0.96088 1.01530 0.91767 1.21025 1.01070 0.90679 1.00815 1.19687 0.98537 0.95730 0.88887 1.69029 1.09223 1.05351 1.29839 0.72567 0.85314 0.91420 0.91724 0.85117 0.95671 0.87258 0.91415 0.91497 0.87202 0.95729 0.82616 0.81414 0.82025 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.12 19.25 74.32 1.43 -6.69 16 2 C -0.22 -10.67 13.65 31.13 0.42 -10.24 16 3 C 0.19 10.45 5.60 84.57 0.47 10.93 16 4 N -0.42 -23.34 2.45 -648.44 -1.59 -24.93 16 5 C -0.30 -16.49 7.36 84.15 0.62 -15.88 16 6 H 0.11 5.90 6.04 -2.91 -0.02 5.88 16 7 C 0.00 -0.05 5.38 84.99 0.46 0.41 16 8 N -0.91 -50.29 10.97 21.70 0.24 -50.05 16 9 Si 0.98 41.74 29.55 68.60 2.03 43.77 16 10 H -0.26 -10.31 6.91 99.48 0.69 -9.62 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 C 0.50 27.65 7.61 86.87 0.66 28.31 16 14 O -0.63 -36.32 15.79 -3.90 -0.06 -36.38 16 15 C 0.12 5.77 6.67 42.13 0.28 6.05 16 16 C -0.18 -7.12 8.24 22.74 0.19 -6.93 16 17 C 0.15 4.86 4.71 38.93 0.18 5.04 16 18 N -0.50 -12.24 4.18 -743.76 -3.11 -15.35 16 19 C 0.02 0.51 9.29 127.69 1.19 1.70 16 20 C 0.02 0.53 9.33 127.69 1.19 1.72 16 21 C -0.09 -2.98 5.76 -21.13 -0.12 -3.11 16 22 C -0.08 -1.92 9.55 22.27 0.21 -1.71 16 23 C -0.11 -2.09 9.96 22.07 0.22 -1.87 16 24 C -0.09 -1.96 9.94 22.03 0.22 -1.74 16 25 C -0.12 -3.80 9.98 22.38 0.22 -3.58 16 26 C 0.10 3.71 6.61 40.38 0.27 3.98 16 27 N -0.42 -19.82 6.29 -178.13 -1.12 -20.94 16 28 H 0.26 6.96 7.80 -4.41 -0.03 6.93 16 29 H 0.13 7.20 5.43 -2.39 -0.01 7.19 16 30 H 0.07 3.69 7.25 -2.39 -0.02 3.67 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.13 5.34 6.74 -2.91 -0.02 5.32 16 33 H 0.02 0.59 7.32 -2.39 -0.02 0.57 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 36 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.02 0.59 7.53 -2.39 -0.02 0.57 16 39 H 0.16 3.01 7.59 -2.91 -0.02 2.99 16 40 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.12 4.22 7.87 -2.91 -0.02 4.20 16 Total: -1.00 -72.87 359.79 5.52 -67.35 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 1.02 Total: 30.15 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 8.12 Total: 6.40 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -5.58 Total: -111.28 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.06 Total: -36.38 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -72.87 5.52 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491618928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.435 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds