Wall clock time and date at job start Tue Mar 31 2020 14:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35918 * 117.00319 * 2 1 4 4 C 1.38708 * 120.05671 * 0.02562 * 3 2 1 5 5 C 1.38155 * 119.95940 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.07236 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.93593 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47040 * 90.00501 * 7 6 5 9 9 C 1.46846 * 111.00301 * 45.78687 * 8 7 6 10 10 C 1.53044 * 109.52262 * 185.83986 * 9 8 7 11 11 C 1.53111 * 109.28036 * 300.82192 * 10 9 8 12 12 C 1.52997 * 109.57524 * 177.59281 * 11 10 9 13 13 C 1.50698 * 109.47127 * 65.28560 * 12 11 10 14 14 H 1.07992 * 120.00223 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99857 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46902 * 90.00155 * 17 15 13 19 19 H 1.48502 * 109.47333 * 209.99907 * 17 15 13 20 20 H 1.48493 * 109.47456 * 330.00276 * 17 15 13 21 21 C 1.53115 * 109.16335 * 57.65139 * 11 10 9 22 22 C 1.46848 * 110.99943 * 169.99976 * 8 7 6 23 23 C 1.38240 * 120.12080 * 359.97438 * 6 5 4 24 24 C 1.38254 * 120.04256 * 0.02562 * 23 6 5 25 25 Cl 1.73609 * 120.03885 * 179.97438 * 24 23 6 26 26 H 1.09001 * 109.47077 * 299.99898 * 1 2 3 27 27 H 1.09001 * 109.46997 * 60.00109 * 1 2 3 28 28 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02437 * 0.03847 * 4 3 2 30 30 H 1.07992 * 119.96641 * 179.72231 * 5 4 3 31 31 H 1.09007 * 109.46763 * 210.00067 * 7 6 5 32 32 H 1.08998 * 109.47210 * 329.99915 * 7 6 5 33 33 H 1.09004 * 109.46138 * 305.85453 * 9 8 7 34 34 H 1.08997 * 109.46385 * 65.82598 * 9 8 7 35 35 H 1.09007 * 109.50093 * 180.87560 * 10 9 8 36 36 H 1.09005 * 109.53397 * 60.78436 * 10 9 8 37 37 H 1.09005 * 109.52110 * 297.75159 * 11 10 9 38 38 H 1.09010 * 109.46863 * 185.28115 * 12 11 10 39 39 H 1.08997 * 109.47246 * 305.27814 * 12 11 10 40 40 H 0.96998 * 120.00447 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.50752 * 182.40926 * 21 11 10 42 42 H 1.08999 * 109.53516 * 62.30779 * 21 11 10 43 43 H 1.08998 * 109.45865 * 294.17098 * 22 8 7 44 44 H 1.08996 * 109.46562 * 54.15317 * 22 8 7 45 45 H 1.08005 * 119.97950 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2919 2.3751 0.0005 5 6 1.9213 3.6050 0.0000 6 6 3.3022 3.6767 -0.0005 7 6 3.9856 5.0198 -0.0017 8 7 4.2082 5.4572 1.3829 9 6 4.7552 4.3652 2.1982 10 6 4.8372 4.8102 3.6602 11 6 5.7338 6.0471 3.7626 12 6 5.7725 6.5335 5.2127 13 6 6.4411 5.4931 6.0739 14 1 6.8019 4.5765 5.6313 15 6 6.5912 5.7110 7.4270 16 7 6.1513 6.8271 7.9661 17 14 7.4193 4.4212 8.4946 18 1 8.8804 4.6822 8.5427 19 1 6.8600 4.4826 9.8689 20 1 7.1760 3.0733 7.9210 21 6 5.1688 7.1529 2.8669 22 6 5.0771 6.6401 1.4278 23 6 4.0570 2.5185 0.0000 24 6 3.4323 1.2852 0.0005 25 17 4.3803 -0.1692 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2133 2.3202 0.0016 30 1 1.3342 4.5113 -0.0041 31 1 4.9434 4.9397 -0.5159 32 1 3.3569 5.7469 -0.5158 33 1 4.1059 3.4931 2.1199 34 1 5.7522 4.1089 1.8401 35 1 5.2578 4.0049 4.2626 36 1 3.8388 5.0532 4.0238 37 1 6.7425 5.7938 3.4363 38 1 6.3337 7.4664 5.2682 39 1 4.7553 6.6998 5.5674 40 1 6.2566 6.9803 8.9181 41 1 5.8263 8.0216 2.9024 42 1 4.1755 7.4338 3.2170 43 1 6.0726 6.3731 1.0734 44 1 4.6617 7.4204 0.7902 45 1 5.1355 2.5772 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520804925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:08 Heat of formation + Delta-G solvation = -48.760289 kcal Electronic energy + Delta-G solvation = -24988.056730 eV Core-core repulsion = 21416.131145 eV Total energy + Delta-G solvation = -3571.925585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = -0.14 seconds Orbital eigenvalues (eV) -41.37142 -40.14163 -38.56386 -37.43470 -36.06561 -34.33275 -32.09293 -31.95334 -31.38923 -29.67579 -28.32861 -26.57201 -24.88741 -24.18858 -23.54781 -22.47897 -21.72521 -20.40175 -19.21114 -18.42570 -17.49570 -17.15502 -16.83218 -16.66312 -16.44226 -15.69793 -15.45226 -15.35504 -15.10410 -14.90330 -14.74802 -14.44088 -14.28761 -13.97754 -13.71521 -13.33458 -13.08994 -13.04068 -12.83473 -12.65236 -12.55020 -12.48412 -12.35941 -12.15115 -12.02732 -11.95354 -11.88581 -11.78125 -11.60587 -11.23846 -10.86905 -10.67915 -10.51417 -9.86950 -9.30293 -9.00357 -8.17218 -6.26409 0.14858 0.23676 1.18060 1.38671 1.39566 1.50586 2.26641 2.41484 2.50192 3.15091 3.18950 3.68331 3.77465 3.97409 4.06542 4.09031 4.14024 4.23690 4.30403 4.39041 4.40914 4.41234 4.57344 4.58673 4.68339 4.72242 4.75518 4.79375 4.86457 4.90893 4.99072 4.99525 5.12938 5.17982 5.20516 5.40040 5.43598 5.46931 5.53780 5.59371 5.63099 5.82546 5.90726 6.17830 6.24259 6.29203 6.31999 6.89779 7.41761 8.94656 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003074 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.019164 B = 9106.970853 C =10181.817094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.125 3.875 4 C -0.196 4.196 5 C -0.053 4.053 6 C -0.111 4.111 7 C 0.100 3.900 8 N -0.538 5.538 9 C 0.067 3.933 10 C -0.093 4.093 11 C -0.074 4.074 12 C 0.035 3.965 13 C -0.529 4.529 14 H 0.057 0.943 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.107 4.107 22 C 0.066 3.934 23 C -0.072 4.072 24 C -0.089 4.089 25 Cl -0.071 7.071 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.046 0.954 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.096 0.904 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -9.538 -22.789 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.078 3.922 4 C -0.214 4.214 5 C -0.071 4.071 6 C -0.112 4.112 7 C -0.026 4.026 8 N -0.263 5.263 9 C -0.061 4.061 10 C -0.131 4.131 11 C -0.093 4.093 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.782 3.218 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.189 1.189 21 C -0.145 4.145 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.116 4.116 25 Cl -0.042 7.042 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.180 0.820 30 H 0.172 0.828 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.115 0.885 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.024 -9.643 -22.443 27.226 hybrid contribution 1.268 -0.731 0.940 1.739 sum -10.756 -10.374 -21.503 26.186 Atomic orbital electron populations 1.23405 0.76004 1.05728 1.02599 1.86131 1.23751 1.25972 1.88216 1.18881 0.90433 0.86041 0.96797 1.21489 1.01481 0.90872 1.07584 1.21218 0.93622 0.98207 0.94100 1.19709 0.94192 0.94148 1.03152 1.21091 0.99541 0.92909 0.89099 1.62073 1.48308 1.05782 1.10141 1.22073 0.97318 0.93954 0.92763 1.21403 0.98957 0.97427 0.95323 1.21082 0.97439 0.95437 0.95343 1.18999 0.94510 0.94731 0.92010 1.21651 1.37547 1.04090 0.93451 0.92450 1.25924 0.96524 0.97601 0.99781 1.70096 1.48328 1.26758 1.12358 0.85559 0.78728 0.79583 0.77890 1.19836 1.20791 1.18949 1.21594 1.00706 0.97478 0.94673 1.22056 0.94705 0.92805 0.96524 1.20931 1.00687 0.89638 0.97854 1.20306 0.89340 0.88610 1.13353 1.98352 1.71888 1.36729 1.97256 0.91634 0.90942 0.86466 0.82025 0.82828 0.93297 0.87573 0.90651 0.95377 0.93263 0.93429 0.93574 0.99490 0.99400 0.92934 0.91870 0.92520 0.94772 0.88541 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.55 9.96 -92.63 -0.92 -7.48 16 3 C 0.13 2.65 6.68 22.52 0.15 2.80 16 4 C -0.20 -3.27 9.04 22.36 0.20 -3.07 16 5 C -0.05 -0.91 9.69 22.26 0.22 -0.69 16 6 C -0.11 -2.19 4.13 -19.85 -0.08 -2.28 16 7 C 0.10 1.89 5.43 85.56 0.46 2.36 16 8 N -0.54 -13.78 4.80 -900.92 -4.32 -18.10 16 9 C 0.07 2.01 4.58 86.33 0.39 2.41 16 10 C -0.09 -3.62 5.15 30.65 0.16 -3.46 16 11 C -0.07 -3.10 2.20 -10.72 -0.02 -3.12 16 12 C 0.03 1.86 4.45 29.85 0.13 1.99 16 13 C -0.53 -30.59 8.45 25.60 0.22 -30.37 16 14 H 0.06 3.21 7.08 -2.91 -0.02 3.19 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 17 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.11 -3.60 5.38 30.65 0.16 -3.43 16 22 C 0.07 1.70 5.42 86.33 0.47 2.17 16 23 C -0.07 -1.57 7.56 22.27 0.17 -1.40 16 24 C -0.09 -2.09 6.33 22.41 0.14 -1.94 16 25 Cl -0.07 -1.72 28.51 -2.72 -0.08 -1.80 16 26 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 28 H 0.12 0.82 8.14 -2.38 -0.02 0.81 16 29 H 0.16 1.75 6.30 -2.91 -0.02 1.73 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.05 0.87 8.02 -2.38 -0.02 0.85 16 32 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.08 2.23 5.64 -2.38 -0.01 2.22 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 2.09 7.06 -2.38 -0.02 2.07 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.96 8.12 -2.39 -0.02 1.94 16 45 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.11 370.50 2.30 -66.81 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.96 Total: 7.27 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.35 Total: -36.36 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -4.04 Total: -75.85 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.92 Total: -7.48 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -69.11 2.30 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520804925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.047 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.14 seconds