Wall clock time and date at job start Tue Mar 31 2020 13:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47183 * 239.99936 * 2 1 3 5 5 C 1.50695 * 109.47094 * 65.00038 * 4 2 1 6 6 H 1.08000 * 120.00218 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47264 * 59.99999 * 9 7 5 11 11 H 1.48504 * 109.46711 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46880 * 299.99546 * 9 7 5 13 13 C 1.53007 * 109.47156 * 120.00255 * 2 1 3 14 14 N 1.46898 * 109.46635 * 294.99997 * 13 2 1 15 15 C 1.48537 * 111.00063 * 287.39463 * 14 13 2 16 16 C 1.54932 * 103.22639 * 200.28372 * 15 14 13 17 17 C 1.54590 * 102.92486 * 37.41291 * 16 15 14 18 18 H 1.08999 * 110.39618 * 96.99937 * 17 16 15 19 19 O 1.42903 * 110.31244 * 219.12714 * 17 16 15 20 20 C 1.35921 * 117.00144 * 271.72368 * 19 17 16 21 21 C 1.38710 * 120.05733 * 5.59716 * 20 19 17 22 22 C 1.38149 * 119.95651 * 179.74608 * 21 20 19 23 23 C 1.38286 * 120.07909 * 0.27847 * 22 21 20 24 24 C 1.38252 * 120.11244 * 359.97438 * 23 22 21 25 25 C 1.38246 * 120.04681 * 359.96068 * 24 23 22 26 26 Cl 1.73601 * 120.04196 * 180.02562 * 25 24 23 27 27 C 1.47904 * 110.99823 * 169.99872 * 14 13 2 28 28 H 1.08993 * 109.47161 * 300.00358 * 1 2 3 29 29 H 1.09005 * 109.46849 * 60.00388 * 1 2 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46870 * 185.00355 * 4 2 1 32 32 H 1.09005 * 109.47177 * 305.00082 * 4 2 1 33 33 H 0.96997 * 120.00526 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47103 * 175.00315 * 13 2 1 35 35 H 1.08997 * 109.46805 * 54.99938 * 13 2 1 36 36 H 1.08997 * 110.66443 * 318.71696 * 15 14 13 37 37 H 1.09003 * 110.66639 * 81.67815 * 15 14 13 38 38 H 1.08999 * 110.72296 * 279.05383 * 16 15 14 39 39 H 1.09005 * 110.72652 * 155.77512 * 16 15 14 40 40 H 1.07999 * 120.02402 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.96743 * 180.25239 * 22 21 20 42 42 H 1.07992 * 119.94258 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.97250 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.91519 * 26.49035 * 27 14 13 45 45 H 1.08995 * 110.08521 * 265.28850 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4997 0.5634 -5.2496 10 1 2.0918 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0198 0.6699 -5.3096 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.4559 1.2795 2.5729 16 6 2.3094 1.6447 4.0714 17 6 2.3259 0.2642 4.7670 18 1 3.3265 0.0355 5.1338 19 8 1.3863 0.2398 5.8434 20 6 1.8297 0.6559 7.0590 21 6 3.1043 1.1874 7.1890 22 6 3.5509 1.6146 8.4246 23 6 2.7309 1.5076 9.5329 24 6 1.4618 0.9735 9.4078 25 6 1.0094 0.5457 8.1735 26 17 -0.5844 -0.1243 8.0165 27 6 1.9141 -0.7411 3.6754 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7199 -1.2952 33 1 2.9244 -1.8414 -4.7317 34 1 3.1263 -0.7995 1.2056 35 1 1.6054 -1.7198 1.2951 36 1 3.4997 1.0889 2.3236 37 1 2.0485 2.0682 1.9404 38 1 1.3646 2.1568 4.2530 39 1 3.1498 2.2541 4.4039 40 1 3.7455 1.2715 6.3241 41 1 4.5418 2.0322 8.5252 42 1 3.0824 1.8418 10.4978 43 1 0.8234 0.8906 10.2750 44 1 2.7227 -1.4506 3.5000 45 1 1.0134 -1.2731 3.9813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602484537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:00 Heat of formation + Delta-G solvation = -24.997408 kcal Electronic energy + Delta-G solvation = -24502.013452 eV Core-core repulsion = 20931.118303 eV Total energy + Delta-G solvation = -3570.895149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75312 -38.98408 -37.37777 -36.57529 -35.01687 -32.41920 -31.26975 -30.64261 -30.11223 -28.50901 -26.78684 -25.43075 -23.52016 -22.87628 -22.74974 -21.25898 -20.65654 -18.94754 -18.76102 -16.84742 -16.51963 -16.30849 -15.80070 -15.41240 -15.08068 -14.67124 -14.48546 -14.35537 -14.20843 -13.80991 -13.26663 -13.17687 -12.88878 -12.44337 -12.38015 -12.22655 -11.95910 -11.81155 -11.72211 -11.55917 -11.35445 -11.10909 -11.07064 -10.97563 -10.83708 -10.80997 -10.69876 -10.27441 -10.24399 -9.63436 -9.27097 -9.12947 -8.96887 -8.50820 -8.31955 -8.19701 -5.96955 -3.97981 0.75793 0.95075 1.94325 2.81046 3.24743 3.34943 3.39227 3.41873 4.04942 4.29800 4.38509 4.48401 4.49201 4.56969 4.66079 4.79977 4.86648 5.00747 5.19672 5.29247 5.32972 5.38715 5.45454 5.55373 5.63552 5.69637 5.77966 5.81311 5.88724 5.96283 6.01540 6.02974 6.16013 6.27437 6.38648 6.51536 6.70058 6.97549 7.02635 7.07222 7.18556 7.25909 7.36726 7.69480 7.85732 8.03169 8.47371 9.08114 9.65265 11.14561 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.002147 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.287354 B =13038.156558 C =13482.996302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.051 3.949 14 N -0.507 5.507 15 C 0.038 3.962 16 C -0.145 4.145 17 C 0.075 3.925 18 H 0.080 0.920 19 O -0.288 6.288 20 C 0.146 3.854 21 C -0.201 4.201 22 C -0.075 4.075 23 C -0.152 4.152 24 C -0.074 4.074 25 C -0.073 4.073 26 Cl -0.056 7.056 27 C 0.040 3.960 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.057 0.943 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 5.408 28.368 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.076 4.076 14 N -0.232 5.232 15 C -0.090 4.090 16 C -0.183 4.183 17 C 0.018 3.982 18 H 0.098 0.902 19 O -0.201 6.201 20 C 0.099 3.901 21 C -0.220 4.220 22 C -0.093 4.093 23 C -0.170 4.170 24 C -0.093 4.093 25 C -0.101 4.101 26 Cl -0.027 7.027 27 C -0.088 4.088 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.075 0.925 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.732 5.248 28.078 28.574 hybrid contribution 0.809 0.222 -0.947 1.266 sum 1.541 5.470 27.131 27.719 Atomic orbital electron populations 1.21587 0.95697 1.00547 1.00237 1.21156 0.96009 0.98979 0.93466 0.92694 1.19131 0.95833 0.95601 0.90489 1.21188 1.34605 1.08265 0.90960 0.92624 1.25022 0.95357 0.95109 0.99090 1.69952 1.39067 1.21233 1.23471 0.86689 0.78933 0.80078 0.82484 1.20328 1.21395 1.20253 1.22545 0.97727 0.97478 0.89883 1.64847 1.52367 1.04714 1.01265 1.23199 0.96423 0.94368 0.95027 1.23084 1.03420 0.96006 0.95782 1.23459 0.91766 0.97132 0.85842 0.90216 1.86294 1.39169 1.79832 1.14784 1.18752 0.92094 0.93988 0.85260 1.21320 0.95512 1.05389 0.99732 1.21067 0.99695 0.96731 0.91814 1.21018 0.93913 1.02762 0.99333 1.20933 0.96386 0.96748 0.95198 1.20250 0.88938 1.07707 0.93167 1.98380 1.22238 1.83936 1.98177 1.22864 1.01887 0.94908 0.89119 0.93835 0.92773 0.94218 0.97010 0.96582 0.93059 0.94901 0.91120 0.93437 0.89150 0.89304 0.90710 0.84477 0.85200 0.85060 0.84457 0.92473 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.57 2.37 -90.61 -0.21 -1.79 16 3 H 0.05 1.13 7.17 -51.93 -0.37 0.76 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.05 0.87 4.10 -3.82 -0.02 0.85 16 14 N -0.51 -7.43 4.70 -230.45 -1.08 -8.52 16 15 C 0.04 0.48 5.91 -1.90 -0.01 0.47 16 16 C -0.14 -1.52 6.43 -24.88 -0.16 -1.68 16 17 C 0.07 0.80 2.84 -25.38 -0.07 0.72 16 18 H 0.08 0.72 6.30 -51.93 -0.33 0.39 16 19 O -0.29 -3.45 9.19 -19.49 -0.18 -3.63 16 20 C 0.15 1.56 6.64 -39.19 -0.26 1.30 16 21 C -0.20 -1.72 8.83 -39.44 -0.35 -2.07 16 22 C -0.07 -0.52 10.04 -39.60 -0.40 -0.92 16 23 C -0.15 -1.02 10.04 -39.56 -0.40 -1.42 16 24 C -0.07 -0.59 9.83 -39.57 -0.39 -0.98 16 25 C -0.07 -0.75 6.33 -39.36 -0.25 -1.00 16 26 Cl -0.06 -0.61 28.50 -51.86 -1.48 -2.09 16 27 C 0.04 0.50 6.48 -2.75 -0.02 0.48 16 28 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.03 0.56 7.83 -51.93 -0.41 0.15 16 35 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.05 0.60 7.81 -51.93 -0.41 0.19 16 37 H 0.09 1.22 7.67 -51.93 -0.40 0.82 16 38 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 40 H 0.14 1.01 5.51 -52.49 -0.29 0.72 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.06 0.67 7.77 -51.93 -0.40 0.26 16 45 H 0.09 1.22 7.96 -51.93 -0.41 0.81 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -30.70 374.16 -11.16 -41.86 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.06 Total: -3.04 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.71 Total: -20.70 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.35 Total: -34.77 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.18 Total: -3.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.70 -11.16 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.861 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds