Wall clock time and date at job start Tue Mar 31 2020 13:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47183 * 239.99936 * 2 1 3 5 5 C 1.50695 * 109.47094 * 65.00038 * 4 2 1 6 6 H 1.08000 * 120.00218 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00171 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47264 * 59.99999 * 9 7 5 11 11 H 1.48504 * 109.46711 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46880 * 299.99546 * 9 7 5 13 13 C 1.53007 * 109.47156 * 120.00255 * 2 1 3 14 14 N 1.46898 * 109.46635 * 294.99997 * 13 2 1 15 15 C 1.48537 * 111.00063 * 287.39463 * 14 13 2 16 16 C 1.54932 * 103.22639 * 200.28372 * 15 14 13 17 17 C 1.54590 * 102.92486 * 37.41291 * 16 15 14 18 18 H 1.08999 * 110.39618 * 96.99937 * 17 16 15 19 19 O 1.42903 * 110.31244 * 219.12714 * 17 16 15 20 20 C 1.35921 * 117.00144 * 271.72368 * 19 17 16 21 21 C 1.38710 * 120.05733 * 5.59716 * 20 19 17 22 22 C 1.38149 * 119.95651 * 179.74608 * 21 20 19 23 23 C 1.38286 * 120.07909 * 0.27847 * 22 21 20 24 24 C 1.38252 * 120.11244 * 359.97438 * 23 22 21 25 25 C 1.38246 * 120.04681 * 359.96068 * 24 23 22 26 26 Cl 1.73601 * 120.04196 * 180.02562 * 25 24 23 27 27 C 1.47904 * 110.99823 * 169.99872 * 14 13 2 28 28 H 1.08993 * 109.47161 * 300.00358 * 1 2 3 29 29 H 1.09005 * 109.46849 * 60.00388 * 1 2 3 30 30 H 1.09000 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46870 * 185.00355 * 4 2 1 32 32 H 1.09005 * 109.47177 * 305.00082 * 4 2 1 33 33 H 0.96997 * 120.00526 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47103 * 175.00315 * 13 2 1 35 35 H 1.08997 * 109.46805 * 54.99938 * 13 2 1 36 36 H 1.08997 * 110.66443 * 318.71696 * 15 14 13 37 37 H 1.09003 * 110.66639 * 81.67815 * 15 14 13 38 38 H 1.08999 * 110.72296 * 279.05383 * 16 15 14 39 39 H 1.09005 * 110.72652 * 155.77512 * 16 15 14 40 40 H 1.07999 * 120.02402 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.96743 * 180.25239 * 22 21 20 42 42 H 1.07992 * 119.94258 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.97250 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.91519 * 26.49035 * 27 14 13 45 45 H 1.08995 * 110.08521 * 265.28850 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4997 0.5634 -5.2496 10 1 2.0918 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0198 0.6699 -5.3096 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.4559 1.2795 2.5729 16 6 2.3094 1.6447 4.0714 17 6 2.3259 0.2642 4.7670 18 1 3.3265 0.0355 5.1338 19 8 1.3863 0.2398 5.8434 20 6 1.8297 0.6559 7.0590 21 6 3.1043 1.1874 7.1890 22 6 3.5509 1.6146 8.4246 23 6 2.7309 1.5076 9.5329 24 6 1.4618 0.9735 9.4078 25 6 1.0094 0.5457 8.1735 26 17 -0.5844 -0.1243 8.0165 27 6 1.9141 -0.7411 3.6754 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7199 -1.2952 33 1 2.9244 -1.8414 -4.7317 34 1 3.1263 -0.7995 1.2056 35 1 1.6054 -1.7198 1.2951 36 1 3.4997 1.0889 2.3236 37 1 2.0485 2.0682 1.9404 38 1 1.3646 2.1568 4.2530 39 1 3.1498 2.2541 4.4039 40 1 3.7455 1.2715 6.3241 41 1 4.5418 2.0322 8.5252 42 1 3.0824 1.8418 10.4978 43 1 0.8234 0.8906 10.2750 44 1 2.7227 -1.4506 3.5000 45 1 1.0134 -1.2731 3.9813 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602484537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:59 Heat of formation + Delta-G solvation = -41.355829 kcal Electronic energy + Delta-G solvation = -24502.722807 eV Core-core repulsion = 20931.118303 eV Total energy + Delta-G solvation = -3571.604503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51014 -39.90877 -38.30740 -37.30515 -36.61229 -34.37105 -32.08981 -31.59075 -30.90637 -29.49123 -28.70386 -26.86872 -24.90565 -23.91090 -23.49018 -22.41693 -21.55338 -20.47914 -19.56113 -18.51659 -17.56012 -17.09282 -16.80955 -16.50717 -16.36742 -15.92682 -15.69008 -15.41196 -14.88622 -14.77272 -14.65807 -14.43693 -14.07500 -13.81534 -13.68616 -13.33777 -13.07295 -12.85834 -12.84507 -12.74388 -12.60154 -12.48540 -12.33459 -12.27467 -12.16557 -11.98984 -11.82809 -11.74426 -11.63420 -11.38554 -11.06990 -10.91616 -10.52282 -9.87883 -9.36690 -9.17909 -8.16955 -6.25786 0.16235 0.34205 1.23562 1.40162 1.42874 1.50457 2.06409 2.42245 2.66144 2.97870 3.16339 3.42982 3.58963 3.77170 3.92186 3.96424 4.10218 4.15422 4.26524 4.28918 4.35817 4.37502 4.52996 4.53697 4.59365 4.73148 4.78000 4.83144 4.86900 4.89938 4.95198 5.03382 5.10009 5.15119 5.27622 5.28949 5.45977 5.46712 5.49525 5.55589 5.72719 5.78065 5.88878 5.97009 6.02163 6.31714 6.34252 6.89698 7.42172 8.94826 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.002147 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.287354 B =13038.156558 C =13482.996302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.064 3.936 14 N -0.519 5.519 15 C 0.034 3.966 16 C -0.133 4.133 17 C 0.081 3.919 18 H 0.102 0.898 19 O -0.309 6.309 20 C 0.121 3.879 21 C -0.205 4.205 22 C -0.073 4.073 23 C -0.146 4.146 24 C -0.079 4.079 25 C -0.095 4.095 26 Cl -0.075 7.075 27 C 0.039 3.961 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.034 0.966 31 H -0.012 1.012 32 H -0.011 1.011 33 H 0.262 0.738 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.066 0.934 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 7.161 30.079 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.064 4.064 14 N -0.243 5.243 15 C -0.093 4.093 16 C -0.171 4.171 17 C 0.024 3.976 18 H 0.120 0.880 19 O -0.222 6.222 20 C 0.075 3.925 21 C -0.223 4.223 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.097 4.097 25 C -0.122 4.122 26 Cl -0.046 7.046 27 C -0.089 4.089 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.167 0.833 41 H 0.177 0.823 42 H 0.179 0.821 43 H 0.171 0.829 44 H 0.084 0.916 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.667 7.016 29.813 30.673 hybrid contribution 0.557 -0.316 -1.374 1.516 sum 2.223 6.699 28.439 29.302 Atomic orbital electron populations 1.21477 0.95055 1.00255 1.00285 1.20946 0.96377 0.98485 0.92829 0.92758 1.19014 0.94163 0.94636 0.92646 1.21590 1.34405 1.08544 0.92077 0.92234 1.25941 0.95307 0.96122 1.02600 1.70087 1.40255 1.22894 1.24316 0.85579 0.78875 0.78838 0.78241 1.19173 1.21019 1.19399 1.22235 0.97379 0.97025 0.89753 1.64727 1.53128 1.05374 1.01108 1.23248 0.96281 0.93154 0.96664 1.23009 1.03955 0.96229 0.93893 1.23391 0.92519 0.96358 0.85311 0.88044 1.86251 1.39905 1.80531 1.15534 1.19000 0.93279 0.95486 0.84752 1.21533 0.94739 1.05064 1.01012 1.21470 1.00881 0.95634 0.91110 1.21424 0.93053 1.01250 1.00670 1.21224 0.97316 0.96353 0.94833 1.20541 0.88436 1.08991 0.94215 1.98365 1.23623 1.84356 1.98276 1.22853 1.01843 0.95411 0.88792 0.91951 0.94361 0.94673 0.99368 0.99242 0.92952 0.95007 0.91616 0.92910 0.90079 0.90497 0.87962 0.83279 0.82333 0.82123 0.82946 0.91581 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 8.89 71.98 0.64 -3.86 16 2 C -0.07 -2.79 2.37 -10.79 -0.03 -2.81 16 3 H 0.05 2.24 7.17 -2.39 -0.02 2.23 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.02 8.41 25.60 0.22 -29.80 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 C 0.06 2.20 4.10 86.31 0.35 2.55 16 14 N -0.52 -14.93 4.70 -883.01 -4.15 -19.08 16 15 C 0.03 0.83 5.91 86.65 0.51 1.35 16 16 C -0.13 -2.55 6.43 31.80 0.20 -2.35 16 17 C 0.08 1.60 2.84 31.47 0.09 1.69 16 18 H 0.10 1.56 6.30 -2.39 -0.02 1.55 16 19 O -0.31 -7.18 9.19 -92.66 -0.85 -8.03 16 20 C 0.12 2.43 6.64 22.52 0.15 2.58 16 21 C -0.20 -2.97 8.83 22.36 0.20 -2.78 16 22 C -0.07 -0.76 10.04 22.26 0.22 -0.54 16 23 C -0.15 -1.47 10.04 22.28 0.22 -1.25 16 24 C -0.08 -1.10 9.83 22.27 0.22 -0.88 16 25 C -0.09 -1.86 6.33 22.41 0.14 -1.72 16 26 Cl -0.07 -1.64 28.50 -2.72 -0.08 -1.72 16 27 C 0.04 0.94 6.48 86.45 0.56 1.50 16 28 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 29 H 0.04 1.60 6.95 -2.38 -0.02 1.59 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.03 1.09 7.83 -2.39 -0.02 1.07 16 35 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 36 H 0.05 1.25 7.81 -2.39 -0.02 1.23 16 37 H 0.08 2.13 7.67 -2.39 -0.02 2.11 16 38 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 39 H 0.10 1.41 7.71 -2.38 -0.02 1.39 16 40 H 0.15 1.70 5.51 -2.91 -0.02 1.68 16 41 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.07 1.48 7.77 -2.39 -0.02 1.46 16 45 H 0.08 2.18 7.96 -2.39 -0.02 2.16 16 Total: -1.00 -67.54 374.16 2.50 -65.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.97 Total: 8.18 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.30 Total: -34.12 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.86 Total: -76.10 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.85 Total: -8.03 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -67.54 2.50 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.686 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds