Wall clock time and date at job start Tue Mar 31 2020 14:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35731 * 116.99719 * 2 1 4 4 C 1.39353 * 120.35941 * 359.97438 * 3 2 1 5 5 N 1.31292 * 120.88270 * 179.74328 * 4 3 2 6 6 C 1.32894 * 121.71603 * 0.56391 * 5 4 3 7 7 C 1.47756 * 119.68574 * 179.70588 * 6 5 4 8 8 O 1.21565 * 119.99537 * 173.54106 * 7 6 5 9 9 N 1.34769 * 120.00181 * 353.26965 * 7 6 5 10 10 C 1.46502 * 120.00152 * 354.63644 * 9 7 6 11 11 C 1.46508 * 119.99894 * 174.64177 * 9 7 6 12 12 C 1.53783 * 113.61231 * 219.13363 * 11 9 7 13 13 C 1.53956 * 87.01876 * 220.04624 * 12 11 9 14 14 N 1.46501 * 113.74112 * 139.94486 * 13 12 11 15 15 C 1.36937 * 120.00205 * 107.40129 * 14 13 12 16 16 H 1.08000 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00111 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47538 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47210 * 210.00153 * 19 17 15 22 22 H 1.48499 * 109.47340 * 329.99798 * 19 17 15 23 23 C 1.53781 * 87.11075 * 25.36630 * 13 12 11 24 24 C 1.39716 * 120.62341 * 359.43951 * 6 5 4 25 25 F 1.35097 * 120.46822 * 180.25207 * 24 6 5 26 26 C 1.38691 * 119.06954 * 0.26738 * 24 6 5 27 27 H 1.08997 * 109.47809 * 299.99971 * 1 2 3 28 28 H 1.09000 * 109.47577 * 60.00093 * 1 2 3 29 29 H 1.09006 * 109.46613 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.55855 * 0.02562 * 4 3 2 31 31 H 1.08999 * 109.46728 * 85.11210 * 10 9 7 32 32 H 1.08996 * 109.46938 * 205.10445 * 10 9 7 33 33 H 1.08996 * 109.47239 * 325.11150 * 10 9 7 34 34 H 1.08993 * 112.84764 * 350.33218 * 11 9 7 35 35 H 1.08996 * 113.61220 * 334.56992 * 12 11 9 36 36 H 1.08996 * 113.61019 * 105.46983 * 12 11 9 37 37 H 1.08998 * 113.53892 * 270.81628 * 13 12 11 38 38 H 0.97007 * 120.00140 * 287.40320 * 14 13 12 39 39 H 0.97008 * 119.99893 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.61569 * 220.08975 * 23 13 12 41 41 H 1.08994 * 113.61822 * 89.18349 * 23 13 12 42 42 H 1.07996 * 120.78515 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8787 3.5580 0.0045 6 6 3.2020 3.6795 -0.0008 7 6 3.8134 5.0247 -0.0014 8 8 5.0178 5.1449 0.1122 9 7 3.0365 6.1179 -0.1333 10 6 1.6024 5.9704 -0.3937 11 6 3.6261 7.4540 -0.0164 12 6 2.7344 8.4574 0.7340 13 6 3.1719 9.5028 -0.3081 14 7 2.0908 10.3909 -0.7424 15 6 2.0690 11.6962 -0.3289 16 1 2.8491 12.0710 0.3171 17 6 1.0449 12.5377 -0.7409 18 7 0.0945 12.0810 -1.5286 19 14 1.0157 14.3185 -0.1774 20 1 1.7610 15.1577 -1.1496 21 1 -0.3906 14.7882 -0.0939 22 1 1.6533 14.4252 1.1595 23 6 3.4259 8.3272 -1.2664 24 6 4.0207 2.5473 -0.0003 25 9 5.3656 2.6744 -0.0007 26 6 3.4332 1.2910 0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 0.2150 2.3247 -0.0005 31 1 1.0734 5.8388 0.5502 32 1 1.2308 6.8629 -0.8970 33 1 1.4359 5.0997 -1.0279 34 1 4.6556 7.4325 0.3409 35 1 1.6725 8.2153 0.6905 36 1 3.0786 8.6764 1.7447 37 1 4.0770 10.0426 -0.0297 38 1 1.3902 10.0543 -1.3229 39 1 -0.6214 12.6691 -1.8162 40 1 4.3275 8.4414 -1.8681 41 1 2.5534 8.0496 -1.8577 42 1 4.0394 0.3972 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998869860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:27 Heat of formation + Delta-G solvation = -18.452873 kcal Electronic energy + Delta-G solvation = -26915.698843 eV Core-core repulsion = 22813.210767 eV Total energy + Delta-G solvation = -4102.488075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.25606 -41.30467 -40.01551 -38.62881 -37.69084 -34.78412 -33.23208 -32.60499 -30.95232 -29.86935 -28.18156 -26.86233 -25.41688 -25.07496 -24.29623 -23.59279 -22.26289 -20.10783 -19.05950 -18.74705 -18.37725 -17.34849 -17.06215 -16.75340 -16.58196 -16.36346 -15.99632 -15.36142 -15.19357 -15.09217 -14.46425 -14.44137 -13.90977 -13.73678 -13.61562 -13.16796 -13.03899 -12.85587 -12.73573 -12.65390 -12.21441 -11.99559 -11.85198 -11.69015 -11.22177 -10.88860 -10.57139 -10.49346 -10.28658 -10.17290 -10.01316 -9.92297 -9.70707 -9.47473 -9.05865 -8.88453 -8.33845 -6.97349 -5.79121 -3.07714 0.16115 0.50003 2.35593 2.49009 2.96485 3.36906 3.43318 3.48830 3.50136 3.67252 3.77278 3.96237 4.22962 4.43770 4.46436 4.56046 4.59301 4.78477 4.92851 5.07273 5.17491 5.22885 5.32740 5.42858 5.47633 5.48381 5.79120 5.86952 5.90334 5.99447 6.14534 6.19339 6.33900 6.38850 6.45484 6.51907 6.60122 6.83451 7.04252 7.15585 7.53214 7.70045 8.16335 8.39448 9.50821 10.07798 10.42599 11.43304 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.002492 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.509743 B =11235.288104 C =12232.912116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.130 3.870 4 C 0.003 3.997 5 N -0.381 5.381 6 C 0.010 3.990 7 C 0.566 3.434 8 O -0.531 6.531 9 N -0.576 5.576 10 C 0.086 3.914 11 C 0.115 3.885 12 C -0.173 4.173 13 C 0.170 3.830 14 N -0.709 5.709 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.161 4.161 24 C 0.156 3.844 25 F -0.098 7.098 26 C -0.162 4.162 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.174 0.826 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -27.183 2.691 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.081 3.919 4 C -0.159 4.159 5 N -0.093 5.093 6 C -0.129 4.129 7 C 0.352 3.648 8 O -0.408 6.408 9 N -0.306 5.306 10 C -0.056 4.056 11 C 0.012 3.988 12 C -0.215 4.215 13 C 0.057 3.943 14 N -0.347 5.347 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.202 4.202 24 C 0.133 3.867 25 F -0.076 7.076 26 C -0.189 4.189 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.191 0.809 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.593 -26.313 2.820 26.471 hybrid contribution -0.058 0.058 0.108 0.135 sum 0.535 -26.255 2.928 26.423 Atomic orbital electron populations 1.23280 0.76847 1.05062 1.02294 1.86066 1.22546 1.25515 1.87312 1.20030 0.92050 0.86126 0.93700 1.23230 1.01337 0.86645 1.04728 1.68139 1.09172 1.25564 1.06383 1.21365 0.89449 0.94231 1.07832 1.17580 0.86135 0.83043 0.78080 1.90836 1.13322 1.85902 1.50763 1.47711 1.09516 1.05396 1.67935 1.22081 0.79305 1.02473 1.01783 1.22706 0.98739 0.78487 0.98914 1.24360 0.99918 0.97243 0.99993 1.21372 0.92619 0.88304 0.92018 1.42354 1.26369 1.08145 1.57846 1.19318 1.07133 0.86719 1.24221 0.90992 1.24758 0.97557 0.98397 1.00193 1.69659 1.14268 1.35306 1.38874 0.86181 0.76728 0.85035 0.78196 1.21693 1.21793 1.20710 1.23922 1.01834 0.97298 0.97108 1.18230 0.78766 0.92715 0.97024 1.91651 1.27210 1.96413 1.92281 1.20815 0.92927 0.97710 1.07428 0.91706 0.91686 0.87364 0.80948 0.92244 0.91064 0.89688 0.86784 0.89735 0.92096 0.90236 0.78093 0.93478 0.91652 0.89964 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.94 10.50 -18.90 -0.20 -2.14 16 3 C 0.13 1.02 6.72 -38.87 -0.26 0.75 16 4 C 0.00 0.02 10.21 -17.37 -0.18 -0.16 16 5 N -0.38 -4.16 6.15 -9.63 -0.06 -4.22 16 6 C 0.01 0.14 6.56 -82.96 -0.54 -0.41 16 7 C 0.57 9.05 7.64 -12.37 -0.09 8.96 16 8 O -0.53 -9.95 14.83 5.31 0.08 -9.87 16 9 N -0.58 -8.80 3.08 -174.15 -0.54 -9.33 16 10 C 0.09 1.13 7.81 59.85 0.47 1.60 16 11 C 0.11 1.87 4.19 -67.11 -0.28 1.59 16 12 C -0.17 -3.03 7.32 -25.83 -0.19 -3.22 16 13 C 0.17 3.36 4.48 -67.03 -0.30 3.06 16 14 N -0.71 -17.55 5.41 -52.55 -0.28 -17.84 16 15 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.16 -2.78 7.35 -25.92 -0.19 -2.97 16 24 C 0.16 1.85 7.30 -38.86 -0.28 1.56 16 25 F -0.10 -1.34 15.56 2.25 0.04 -1.30 16 26 C -0.16 -1.43 10.10 -39.11 -0.40 -1.83 16 27 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 28 H 0.06 0.11 7.67 -51.93 -0.40 -0.28 16 29 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.17 0.80 6.31 -52.49 -0.33 0.47 16 31 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 32 H 0.07 0.98 6.14 -51.93 -0.32 0.66 16 33 H 0.08 1.02 5.74 -51.93 -0.30 0.72 16 34 H 0.11 1.92 7.25 -51.93 -0.38 1.54 16 35 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 38 H 0.39 10.04 7.92 -40.82 -0.32 9.71 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.43 6.86 -51.93 -0.36 1.07 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -33.28 351.43 -6.69 -39.98 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.22 Total: 6.62 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.50 Total: 2.68 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.16 Total: -58.50 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.12 Total: -12.01 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.28 -6.69 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998869860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.524 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds