Wall clock time and date at job start Tue Mar 31 2020 14:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35731 * 116.99719 * 2 1 4 4 C 1.39353 * 120.35941 * 359.97438 * 3 2 1 5 5 N 1.31292 * 120.88270 * 179.74328 * 4 3 2 6 6 C 1.32894 * 121.71603 * 0.56391 * 5 4 3 7 7 C 1.47756 * 119.68574 * 179.70588 * 6 5 4 8 8 O 1.21565 * 119.99537 * 173.54106 * 7 6 5 9 9 N 1.34769 * 120.00181 * 353.26965 * 7 6 5 10 10 C 1.46502 * 120.00152 * 354.63644 * 9 7 6 11 11 C 1.46508 * 119.99894 * 174.64177 * 9 7 6 12 12 C 1.53783 * 113.61231 * 219.13363 * 11 9 7 13 13 C 1.53956 * 87.01876 * 220.04624 * 12 11 9 14 14 N 1.46501 * 113.74112 * 139.94486 * 13 12 11 15 15 C 1.36937 * 120.00205 * 107.40129 * 14 13 12 16 16 H 1.08000 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00111 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47538 * 89.99973 * 19 17 15 21 21 H 1.48501 * 109.47210 * 210.00153 * 19 17 15 22 22 H 1.48499 * 109.47340 * 329.99798 * 19 17 15 23 23 C 1.53781 * 87.11075 * 25.36630 * 13 12 11 24 24 C 1.39716 * 120.62341 * 359.43951 * 6 5 4 25 25 F 1.35097 * 120.46822 * 180.25207 * 24 6 5 26 26 C 1.38691 * 119.06954 * 0.26738 * 24 6 5 27 27 H 1.08997 * 109.47809 * 299.99971 * 1 2 3 28 28 H 1.09000 * 109.47577 * 60.00093 * 1 2 3 29 29 H 1.09006 * 109.46613 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.55855 * 0.02562 * 4 3 2 31 31 H 1.08999 * 109.46728 * 85.11210 * 10 9 7 32 32 H 1.08996 * 109.46938 * 205.10445 * 10 9 7 33 33 H 1.08996 * 109.47239 * 325.11150 * 10 9 7 34 34 H 1.08993 * 112.84764 * 350.33218 * 11 9 7 35 35 H 1.08996 * 113.61220 * 334.56992 * 12 11 9 36 36 H 1.08996 * 113.61019 * 105.46983 * 12 11 9 37 37 H 1.08998 * 113.53892 * 270.81628 * 13 12 11 38 38 H 0.97007 * 120.00140 * 287.40320 * 14 13 12 39 39 H 0.97008 * 119.99893 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.61569 * 220.08975 * 23 13 12 41 41 H 1.08994 * 113.61822 * 89.18349 * 23 13 12 42 42 H 1.07996 * 120.78515 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8787 3.5580 0.0045 6 6 3.2020 3.6795 -0.0008 7 6 3.8134 5.0247 -0.0014 8 8 5.0178 5.1449 0.1122 9 7 3.0365 6.1179 -0.1333 10 6 1.6024 5.9704 -0.3937 11 6 3.6261 7.4540 -0.0164 12 6 2.7344 8.4574 0.7340 13 6 3.1719 9.5028 -0.3081 14 7 2.0908 10.3909 -0.7424 15 6 2.0690 11.6962 -0.3289 16 1 2.8491 12.0710 0.3171 17 6 1.0449 12.5377 -0.7409 18 7 0.0945 12.0810 -1.5286 19 14 1.0157 14.3185 -0.1774 20 1 1.7610 15.1577 -1.1496 21 1 -0.3906 14.7882 -0.0939 22 1 1.6533 14.4252 1.1595 23 6 3.4259 8.3272 -1.2664 24 6 4.0207 2.5473 -0.0003 25 9 5.3656 2.6744 -0.0007 26 6 3.4332 1.2910 0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 0.2150 2.3247 -0.0005 31 1 1.0734 5.8388 0.5502 32 1 1.2308 6.8629 -0.8970 33 1 1.4359 5.0997 -1.0279 34 1 4.6556 7.4325 0.3409 35 1 1.6725 8.2153 0.6905 36 1 3.0786 8.6764 1.7447 37 1 4.0770 10.0426 -0.0297 38 1 1.3902 10.0543 -1.3229 39 1 -0.6214 12.6691 -1.8162 40 1 4.3275 8.4414 -1.8681 41 1 2.5534 8.0496 -1.8577 42 1 4.0394 0.3972 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998869860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:26 Heat of formation + Delta-G solvation = -40.752758 kcal Electronic energy + Delta-G solvation = -26916.665838 eV Core-core repulsion = 22813.210767 eV Total energy + Delta-G solvation = -4103.455071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.18178 -42.09695 -41.10671 -39.61417 -38.80894 -36.24231 -34.91625 -33.46261 -32.10225 -31.46413 -28.52749 -28.01270 -26.76151 -26.46566 -25.66606 -24.61856 -23.49872 -21.37072 -20.30530 -19.61585 -19.21824 -19.02557 -18.30937 -17.70187 -17.47141 -17.34679 -16.66079 -16.59530 -16.30371 -16.15239 -15.91558 -15.68997 -15.09035 -14.94907 -14.60725 -14.36294 -14.29922 -14.06541 -13.84810 -13.48103 -13.28485 -13.19080 -13.12165 -12.78261 -12.69372 -12.45369 -12.22514 -12.13010 -11.99796 -11.70147 -11.46846 -11.28631 -10.86924 -10.75025 -10.51778 -9.83367 -9.53220 -8.98178 -7.93431 -5.21698 -0.66020 -0.20792 1.49479 1.49969 1.51017 1.58951 1.75647 1.93749 2.46033 2.58161 2.86725 2.95337 3.34763 3.37977 3.40986 3.72517 3.73590 3.80323 3.94247 3.98516 4.18691 4.27855 4.37312 4.40853 4.42262 4.44387 4.67592 4.74450 4.80235 4.83565 4.86684 4.89181 5.02314 5.07293 5.13201 5.23443 5.43793 5.52912 5.63549 5.97379 6.27256 6.29083 6.41124 6.97306 7.35286 8.09688 8.34349 9.29716 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.002492 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.509743 B =11235.288104 C =12232.912116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.149 3.851 4 C 0.014 3.986 5 N -0.390 5.390 6 C -0.018 4.018 7 C 0.560 3.440 8 O -0.569 6.569 9 N -0.578 5.578 10 C 0.091 3.909 11 C 0.127 3.873 12 C -0.159 4.159 13 C 0.155 3.845 14 N -0.722 5.722 15 C -0.244 4.244 16 H 0.077 0.923 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.270 1.270 23 C -0.149 4.149 24 C 0.141 3.859 25 F -0.116 7.116 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.211 0.789 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -29.202 3.255 29.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.218 6.218 3 C 0.098 3.902 4 C -0.149 4.149 5 N -0.102 5.102 6 C -0.154 4.154 7 C 0.349 3.651 8 O -0.449 6.449 9 N -0.307 5.307 10 C -0.051 4.051 11 C 0.023 3.977 12 C -0.200 4.200 13 C 0.045 3.955 14 N -0.359 5.359 15 C -0.376 4.376 16 H 0.095 0.905 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.189 4.189 24 C 0.118 3.882 25 F -0.094 7.094 26 C -0.185 4.185 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.227 0.773 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.208 0.792 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.551 -28.365 3.406 28.574 hybrid contribution 0.215 0.441 -0.053 0.493 sum -0.336 -27.924 3.353 28.127 Atomic orbital electron populations 1.23681 0.74558 1.06934 1.03634 1.86095 1.24821 1.24463 1.86388 1.20045 0.91697 0.86837 0.91607 1.23822 1.02898 0.85656 1.02549 1.68044 1.08052 1.27183 1.06967 1.20897 0.90545 0.92822 1.11177 1.18045 0.85791 0.84230 0.77062 1.90797 1.14928 1.86695 1.52496 1.47740 1.10336 1.04792 1.67878 1.22154 0.77959 1.02621 1.02353 1.22409 0.98297 0.79223 0.97725 1.24124 0.99913 0.96398 0.99599 1.21632 0.91479 0.88572 0.93843 1.42482 1.27343 1.08040 1.58043 1.19694 1.06702 0.87916 1.23270 0.90541 1.25533 0.97696 1.02317 1.01088 1.69804 1.15015 1.36437 1.40585 0.85168 0.76312 0.80352 0.78098 1.21570 1.22205 1.19528 1.23769 1.01990 0.96013 0.97139 1.18411 0.78022 0.93627 0.98180 1.91598 1.28578 1.96593 1.92672 1.20981 0.93840 0.97085 1.06630 0.90342 0.90280 0.85465 0.77293 0.91504 0.92006 0.88244 0.87226 0.90073 0.91584 0.90223 0.79215 0.94000 0.91119 0.90024 0.80074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.77 10.50 -90.54 -0.95 -3.72 16 3 C 0.15 1.86 6.72 22.73 0.15 2.01 16 4 C 0.01 0.18 10.21 85.04 0.87 1.05 16 5 N -0.39 -7.81 6.15 -184.39 -1.13 -8.95 16 6 C -0.02 -0.45 6.56 41.86 0.27 -0.18 16 7 C 0.56 18.16 7.64 86.76 0.66 18.83 16 8 O -0.57 -22.02 14.83 -3.92 -0.06 -22.07 16 9 N -0.58 -17.60 3.08 -823.15 -2.54 -20.14 16 10 C 0.09 2.31 7.81 127.77 1.00 3.30 16 11 C 0.13 4.16 4.19 45.52 0.19 4.35 16 12 C -0.16 -5.53 7.32 31.18 0.23 -5.30 16 13 C 0.16 6.18 4.48 45.58 0.20 6.38 16 14 N -0.72 -36.06 5.41 -320.17 -1.73 -37.79 16 15 C -0.24 -13.46 9.97 84.03 0.84 -12.62 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 19 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 C -0.15 -5.14 7.35 31.12 0.23 -4.91 16 24 C 0.14 3.29 7.30 22.74 0.17 3.46 16 25 F -0.12 -3.28 15.56 44.97 0.70 -2.58 16 26 C -0.16 -2.52 10.10 22.57 0.23 -2.29 16 27 H 0.08 -0.08 7.67 -2.39 -0.02 -0.10 16 28 H 0.08 -0.08 7.67 -2.39 -0.02 -0.10 16 29 H 0.13 -0.29 8.14 -2.38 -0.02 -0.31 16 30 H 0.21 0.94 6.31 -2.91 -0.02 0.92 16 31 H 0.07 1.59 8.01 -2.39 -0.02 1.57 16 32 H 0.06 1.68 6.14 -2.39 -0.01 1.67 16 33 H 0.10 2.24 5.74 -2.39 -0.01 2.23 16 34 H 0.11 3.73 7.25 -2.39 -0.02 3.71 16 35 H 0.08 2.90 6.70 -2.39 -0.02 2.89 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 38 H 0.38 19.95 7.92 -92.70 -0.73 19.21 16 39 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.08 2.84 6.86 -2.39 -0.02 2.83 16 42 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.98 351.43 3.56 -69.43 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.34 Total: 24.65 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.62 Total: 11.43 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -5.12 Total: -125.13 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -1.01 Total: -25.79 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.70 Total: -2.58 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -72.98 3.56 -69.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998869860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.675 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds