Wall clock time and date at job start Tue Mar 31 2020 14:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35927 * 117.00169 * 2 1 4 4 C 1.38703 * 120.05735 * 359.97438 * 3 2 1 5 5 C 1.38153 * 119.95693 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.07298 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.93776 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47408 * 83.39956 * 7 6 5 9 9 C 1.46897 * 111.00327 * 192.26679 * 8 7 6 10 10 C 1.50705 * 109.47403 * 178.14727 * 9 8 7 11 11 H 1.07997 * 120.00037 * 5.08521 * 10 9 8 12 12 C 1.37879 * 120.00012 * 185.09275 * 10 9 8 13 13 N 1.31516 * 120.00112 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99892 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47368 * 89.99314 * 14 12 10 16 16 H 1.48503 * 109.46772 * 209.99544 * 14 12 10 17 17 H 1.48501 * 109.46719 * 329.99319 * 14 12 10 18 18 C 1.46898 * 110.99991 * 68.31681 * 8 7 6 19 19 C 1.54269 * 110.03231 * 218.66583 * 18 8 7 20 20 C 1.54964 * 104.15880 * 217.13404 * 19 18 8 21 21 C 1.54897 * 102.77995 * 37.88403 * 20 19 18 22 22 C 1.53873 * 110.03696 * 101.44394 * 18 8 7 23 23 C 1.38241 * 120.11804 * 0.26615 * 6 5 4 24 24 C 1.38255 * 120.04342 * 359.45786 * 23 6 5 25 25 Cl 1.73602 * 120.03563 * 180.26756 * 24 23 6 26 26 H 1.09009 * 109.47023 * 60.00287 * 1 2 3 27 27 H 1.08997 * 109.47787 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47302 * 300.00678 * 1 2 3 29 29 H 1.08000 * 120.02335 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.96606 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47317 * 323.40310 * 7 6 5 32 32 H 1.08997 * 109.47120 * 203.40039 * 7 6 5 33 33 H 1.08998 * 109.47477 * 298.14728 * 9 8 7 34 34 H 1.09001 * 109.47027 * 58.14402 * 9 8 7 35 35 H 0.96995 * 120.00356 * 180.02562 * 13 12 10 36 36 H 1.09007 * 110.01500 * 340.05000 * 18 8 7 37 37 H 1.08996 * 110.48660 * 335.77385 * 19 18 8 38 38 H 1.08993 * 110.48918 * 98.42382 * 19 18 8 39 39 H 1.08999 * 110.72050 * 279.57057 * 20 19 18 40 40 H 1.08995 * 110.92801 * 156.29447 * 20 19 18 41 41 H 1.08991 * 110.48653 * 203.40906 * 21 20 19 42 42 H 1.08999 * 110.59605 * 80.81420 * 21 20 19 43 43 H 1.08995 * 110.03202 * 238.57176 * 22 18 8 44 44 H 1.09002 * 110.03031 * 0.02562 * 22 18 8 45 45 H 1.08005 * 119.97398 * 179.72577 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9212 3.6050 0.0000 6 6 3.3023 3.6766 0.0005 7 6 3.9856 5.0198 0.0017 8 7 4.0653 5.5275 1.3778 9 6 4.4548 6.9438 1.3948 10 6 4.4818 7.4405 2.8174 11 1 4.3150 6.7523 3.6328 12 6 4.7191 8.7735 3.0778 13 7 4.9225 9.6114 2.0848 14 14 4.7532 9.3889 4.8412 15 1 6.1370 9.2947 5.3717 16 1 4.3032 10.8036 4.8804 17 1 3.8465 8.5577 5.6731 18 6 4.9881 4.7182 2.1849 19 6 4.4282 4.5434 3.6117 20 6 5.6820 4.6010 4.5207 21 6 6.5524 5.6837 3.8356 22 6 6.3383 5.4424 2.3270 23 6 4.0570 2.5184 -0.0050 24 6 3.4322 1.2851 0.0002 25 17 4.3802 -0.1692 0.0002 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2132 2.3202 -0.0005 30 1 1.3341 4.5114 -0.0008 31 1 3.4153 5.7182 -0.6107 32 1 4.9911 4.9162 -0.4061 33 1 5.4451 7.0536 0.9528 34 1 3.7340 7.5257 0.8203 35 1 5.0899 10.5491 2.2680 36 1 5.1344 3.7435 1.7193 37 1 3.7434 5.3558 3.8550 38 1 3.9287 3.5797 3.7102 39 1 6.1966 3.6402 4.5292 40 1 5.4152 4.9036 5.5332 41 1 7.6020 5.5516 4.0978 42 1 6.2131 6.6814 4.1142 43 1 7.1399 4.8190 1.9311 44 1 6.3087 6.3947 1.7975 45 1 5.1354 2.5771 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138474431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:21 Heat of formation + Delta-G solvation = 1.859188 kcal Electronic energy + Delta-G solvation = -25981.043919 eV Core-core repulsion = 22411.313359 eV Total energy + Delta-G solvation = -3569.730560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = -0.44 seconds Orbital eigenvalues (eV) -40.27269 -38.91741 -37.50778 -36.34809 -34.25327 -32.66823 -30.86781 -30.63041 -28.12221 -27.80225 -27.12422 -26.40087 -23.91888 -22.68449 -22.00767 -21.00219 -19.88219 -18.39981 -17.98726 -16.73851 -16.48372 -15.92153 -15.62545 -15.21981 -15.04086 -14.39013 -14.25444 -14.00869 -13.93326 -13.83259 -13.13421 -13.01480 -12.72093 -12.37685 -12.02757 -11.86445 -11.61126 -11.56884 -11.20058 -11.06963 -11.04126 -10.89455 -10.77116 -10.68947 -10.57873 -10.42639 -10.25094 -10.11328 -9.97049 -9.49450 -9.23200 -8.82594 -8.73154 -8.37895 -8.04432 -7.16400 -6.02917 -3.99616 1.22454 1.36134 2.23104 3.11027 3.29553 3.37509 3.40332 3.65966 4.42359 4.70627 4.79418 4.97194 4.98365 5.05279 5.15857 5.29251 5.32554 5.36493 5.43136 5.48082 5.54601 5.67624 5.80260 5.99534 6.05338 6.10229 6.17010 6.25938 6.31999 6.38984 6.44849 6.57938 6.67113 6.67567 6.73801 6.74982 6.86135 6.98986 7.03382 7.20205 7.34034 7.39700 7.59319 7.92119 8.08907 8.23219 8.55814 9.06955 9.61352 11.08668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.003579 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.709005 B = 7822.485636 C = 8318.954622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.125 3.875 4 C -0.198 4.198 5 C -0.051 4.051 6 C -0.082 4.082 7 C 0.091 3.909 8 N -0.525 5.525 9 C 0.187 3.813 10 C -0.505 4.505 11 H 0.084 0.916 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.883 3.117 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.272 1.272 18 C 0.094 3.906 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.159 4.159 23 C -0.070 4.070 24 C -0.067 4.067 25 Cl -0.068 7.068 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.001 0.999 34 H 0.032 0.968 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.090 0.910 43 H 0.031 0.969 44 H 0.111 0.889 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -15.899 -4.538 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.079 3.921 4 C -0.217 4.217 5 C -0.070 4.070 6 C -0.083 4.083 7 C -0.037 4.037 8 N -0.249 5.249 9 C 0.063 3.937 10 C -0.543 4.543 11 H 0.102 0.898 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.711 3.289 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.015 4.015 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.197 4.197 23 C -0.089 4.089 24 C -0.094 4.094 25 Cl -0.040 7.040 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.018 0.982 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.129 0.871 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.673 -16.055 -4.378 17.582 hybrid contribution 0.705 0.487 0.620 1.058 sum -4.968 -15.568 -3.758 16.768 Atomic orbital electron populations 1.23060 0.78399 1.03851 1.01467 1.86124 1.21262 1.26213 1.88711 1.18613 0.90410 0.84996 0.98106 1.21168 0.99952 0.91700 1.08893 1.20959 0.94151 0.97104 0.94781 1.19859 0.93535 0.94858 1.00062 1.21002 0.97865 0.91675 0.93167 1.62471 1.49942 1.05308 1.07175 1.19942 0.94349 0.81313 0.98136 1.21576 1.46683 0.93414 0.92607 0.89845 1.24923 0.95977 0.96901 0.96621 1.69945 1.49513 1.03814 1.30659 0.86726 0.78365 0.78211 0.85582 1.20652 1.21427 1.19703 1.22096 0.90564 0.94642 0.94208 1.22566 0.97370 1.00817 0.93997 1.22465 0.97197 0.98228 0.98360 1.22399 0.97049 1.00615 0.95204 1.22951 0.95639 1.02998 0.98071 1.20853 1.00326 0.89434 0.98325 1.20065 0.88532 0.88372 1.12478 1.98342 1.71812 1.36577 1.97238 0.92623 0.88310 0.92505 0.84911 0.84817 0.90234 0.94805 0.98223 0.95027 0.93081 0.92812 0.88879 0.93908 0.93205 0.92758 0.94312 0.89182 0.95005 0.87142 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.76 9.96 -19.51 -0.19 -3.96 16 3 C 0.12 1.66 6.68 -39.20 -0.26 1.39 16 4 C -0.20 -2.41 9.04 -39.44 -0.36 -2.77 16 5 C -0.05 -0.69 9.72 -39.59 -0.38 -1.08 16 6 C -0.08 -1.21 4.94 -104.60 -0.52 -1.73 16 7 C 0.09 1.51 5.03 -4.98 -0.03 1.49 16 8 N -0.53 -10.34 4.41 -228.18 -1.01 -11.35 16 9 C 0.19 4.41 4.20 -4.98 -0.02 4.39 16 10 C -0.50 -12.70 5.49 -34.44 -0.19 -12.89 16 11 H 0.08 2.06 3.18 -52.49 -0.17 1.89 16 12 C 0.06 1.50 5.42 -17.82 -0.10 1.40 16 13 N -0.90 -25.31 13.29 55.43 0.74 -24.58 16 14 Si 0.88 20.72 28.96 -169.99 -4.92 15.79 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.09 1.75 2.72 -66.59 -0.18 1.57 16 19 C -0.11 -2.04 5.87 -25.03 -0.15 -2.19 16 20 C -0.12 -2.17 6.85 -24.69 -0.17 -2.34 16 21 C -0.12 -2.22 6.13 -25.07 -0.15 -2.37 16 22 C -0.16 -3.10 5.63 -25.61 -0.14 -3.25 16 23 C -0.07 -1.00 8.01 -39.57 -0.32 -1.32 16 24 C -0.07 -0.95 6.33 -39.36 -0.25 -1.20 16 25 Cl -0.07 -0.91 28.50 -51.86 -1.48 -2.39 16 26 H 0.06 0.37 7.66 -51.92 -0.40 -0.03 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 30 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.08 1.30 7.98 -51.93 -0.41 0.88 16 32 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 33 H 0.00 0.01 5.83 -51.93 -0.30 -0.29 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.05 0.94 5.32 -51.92 -0.28 0.67 16 37 H 0.09 1.96 5.67 -51.93 -0.29 1.67 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.97 5.32 -51.93 -0.28 1.70 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 2.49 3.93 -51.93 -0.20 2.29 16 45 H 0.13 1.83 7.59 -52.48 -0.40 1.43 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -27.75 356.03 -10.11 -37.86 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.39 Total: 2.92 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -2.22 Total: -19.67 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.27 Total: -35.92 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.19 Total: -3.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.92 Total: 15.79 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.75 -10.11 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138474431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.722 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.44 seconds