Wall clock time and date at job start Tue Mar 31 2020 14:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35927 * 117.00169 * 2 1 4 4 C 1.38703 * 120.05735 * 359.97438 * 3 2 1 5 5 C 1.38153 * 119.95693 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.07298 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.93776 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47408 * 83.39956 * 7 6 5 9 9 C 1.46897 * 111.00327 * 192.26679 * 8 7 6 10 10 C 1.50705 * 109.47403 * 178.14727 * 9 8 7 11 11 H 1.07997 * 120.00037 * 5.08521 * 10 9 8 12 12 C 1.37879 * 120.00012 * 185.09275 * 10 9 8 13 13 N 1.31516 * 120.00112 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99892 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47368 * 89.99314 * 14 12 10 16 16 H 1.48503 * 109.46772 * 209.99544 * 14 12 10 17 17 H 1.48501 * 109.46719 * 329.99319 * 14 12 10 18 18 C 1.46898 * 110.99991 * 68.31681 * 8 7 6 19 19 C 1.54269 * 110.03231 * 218.66583 * 18 8 7 20 20 C 1.54964 * 104.15880 * 217.13404 * 19 18 8 21 21 C 1.54897 * 102.77995 * 37.88403 * 20 19 18 22 22 C 1.53873 * 110.03696 * 101.44394 * 18 8 7 23 23 C 1.38241 * 120.11804 * 0.26615 * 6 5 4 24 24 C 1.38255 * 120.04342 * 359.45786 * 23 6 5 25 25 Cl 1.73602 * 120.03563 * 180.26756 * 24 23 6 26 26 H 1.09009 * 109.47023 * 60.00287 * 1 2 3 27 27 H 1.08997 * 109.47787 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47302 * 300.00678 * 1 2 3 29 29 H 1.08000 * 120.02335 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.96606 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47317 * 323.40310 * 7 6 5 32 32 H 1.08997 * 109.47120 * 203.40039 * 7 6 5 33 33 H 1.08998 * 109.47477 * 298.14728 * 9 8 7 34 34 H 1.09001 * 109.47027 * 58.14402 * 9 8 7 35 35 H 0.96995 * 120.00356 * 180.02562 * 13 12 10 36 36 H 1.09007 * 110.01500 * 340.05000 * 18 8 7 37 37 H 1.08996 * 110.48660 * 335.77385 * 19 18 8 38 38 H 1.08993 * 110.48918 * 98.42382 * 19 18 8 39 39 H 1.08999 * 110.72050 * 279.57057 * 20 19 18 40 40 H 1.08995 * 110.92801 * 156.29447 * 20 19 18 41 41 H 1.08991 * 110.48653 * 203.40906 * 21 20 19 42 42 H 1.08999 * 110.59605 * 80.81420 * 21 20 19 43 43 H 1.08995 * 110.03202 * 238.57176 * 22 18 8 44 44 H 1.09002 * 110.03031 * 0.02562 * 22 18 8 45 45 H 1.08005 * 119.97398 * 179.72577 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9212 3.6050 0.0000 6 6 3.3023 3.6766 0.0005 7 6 3.9856 5.0198 0.0017 8 7 4.0653 5.5275 1.3778 9 6 4.4548 6.9438 1.3948 10 6 4.4818 7.4405 2.8174 11 1 4.3150 6.7523 3.6328 12 6 4.7191 8.7735 3.0778 13 7 4.9225 9.6114 2.0848 14 14 4.7532 9.3889 4.8412 15 1 6.1370 9.2947 5.3717 16 1 4.3032 10.8036 4.8804 17 1 3.8465 8.5577 5.6731 18 6 4.9881 4.7182 2.1849 19 6 4.4282 4.5434 3.6117 20 6 5.6820 4.6010 4.5207 21 6 6.5524 5.6837 3.8356 22 6 6.3383 5.4424 2.3270 23 6 4.0570 2.5184 -0.0050 24 6 3.4322 1.2851 0.0002 25 17 4.3802 -0.1692 0.0002 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2132 2.3202 -0.0005 30 1 1.3341 4.5114 -0.0008 31 1 3.4153 5.7182 -0.6107 32 1 4.9911 4.9162 -0.4061 33 1 5.4451 7.0536 0.9528 34 1 3.7340 7.5257 0.8203 35 1 5.0899 10.5491 2.2680 36 1 5.1344 3.7435 1.7193 37 1 3.7434 5.3558 3.8550 38 1 3.9287 3.5797 3.7102 39 1 6.1966 3.6402 4.5292 40 1 5.4152 4.9036 5.5332 41 1 7.6020 5.5516 4.0978 42 1 6.2131 6.6814 4.1142 43 1 7.1399 4.8190 1.9311 44 1 6.3087 6.3947 1.7975 45 1 5.1354 2.5771 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138474431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:16 Heat of formation + Delta-G solvation = -12.441882 kcal Electronic energy + Delta-G solvation = -25981.664060 eV Core-core repulsion = 22411.313359 eV Total energy + Delta-G solvation = -3570.350701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -41.30303 -40.34343 -38.56734 -37.39423 -35.73007 -34.58876 -31.90847 -31.88496 -29.65886 -28.88520 -28.73682 -27.63135 -25.43429 -23.72304 -23.69870 -22.15458 -21.37147 -19.76117 -19.11673 -18.55896 -17.48720 -16.96915 -16.88029 -16.69134 -16.47896 -16.17958 -15.42871 -15.22100 -15.05494 -14.87511 -14.58726 -14.39487 -14.07970 -13.77448 -13.49206 -13.06009 -12.93379 -12.81734 -12.75304 -12.47222 -12.43936 -12.31865 -12.05421 -12.03032 -11.88560 -11.78364 -11.69519 -11.60974 -11.54557 -11.23301 -10.89532 -10.58631 -10.35437 -9.84121 -9.09545 -8.79054 -8.07382 -6.07705 0.18699 0.30617 1.19810 1.42153 1.44770 1.52936 2.29382 2.46051 2.60066 3.27604 3.46695 3.76588 3.84512 4.00333 4.02129 4.04436 4.26011 4.32847 4.37614 4.43699 4.44340 4.56596 4.67276 4.74287 4.78081 4.81663 4.82468 4.90989 4.99564 5.02345 5.05092 5.16031 5.22326 5.24877 5.26042 5.33331 5.39766 5.56844 5.63999 5.65865 5.75498 5.88095 5.96229 6.23054 6.32030 6.50847 6.79471 7.07425 7.56884 9.04930 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.003579 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.709005 B = 7822.485636 C = 8318.954622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.126 3.874 4 C -0.191 4.191 5 C -0.056 4.056 6 C -0.095 4.095 7 C 0.094 3.906 8 N -0.528 5.528 9 C 0.202 3.798 10 C -0.495 4.495 11 H 0.091 0.909 12 C 0.007 3.993 13 N -0.938 5.938 14 Si 0.937 3.063 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.264 1.264 18 C 0.095 3.905 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.157 4.157 23 C -0.072 4.072 24 C -0.081 4.081 25 Cl -0.066 7.066 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.034 0.966 33 H -0.019 1.019 34 H 0.001 0.999 35 H 0.257 0.743 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 -18.356 -3.601 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.080 3.920 4 C -0.209 4.209 5 C -0.074 4.074 6 C -0.096 4.096 7 C -0.034 4.034 8 N -0.251 5.251 9 C 0.077 3.923 10 C -0.533 4.533 11 H 0.109 0.891 12 C -0.190 4.190 13 N -0.581 5.581 14 Si 0.764 3.236 15 H -0.202 1.202 16 H -0.219 1.219 17 H -0.188 1.188 18 C -0.014 4.014 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.195 4.195 23 C -0.091 4.091 24 C -0.108 4.108 25 Cl -0.037 7.037 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.052 0.948 33 H -0.002 1.002 34 H 0.019 0.981 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.571 -18.543 -3.434 19.971 hybrid contribution 0.921 1.117 0.258 1.470 sum -5.651 -17.426 -3.177 18.593 Atomic orbital electron populations 1.23399 0.76102 1.05743 1.02518 1.86120 1.23647 1.25635 1.88330 1.18761 0.90352 0.85821 0.97105 1.21404 1.01355 0.90611 1.07549 1.21084 0.93721 0.98046 0.94573 1.19628 0.94124 0.93699 1.02182 1.20968 0.98174 0.92886 0.91341 1.62372 1.49993 1.03432 1.09318 1.19606 0.92362 0.83571 0.96791 1.21894 1.44558 0.93373 0.93502 0.89106 1.25612 0.96245 0.97404 0.99747 1.70075 1.51559 1.03905 1.32521 0.85859 0.78545 0.77377 0.81838 1.20163 1.21863 1.18799 1.22160 0.89850 0.94916 0.94434 1.22498 0.97534 1.00514 0.94001 1.22442 0.96142 0.98643 0.98170 1.22347 0.98473 0.99694 0.95033 1.22865 0.96862 1.01627 0.98183 1.20825 1.00442 0.89426 0.98404 1.20180 0.89211 0.88363 1.13068 1.98338 1.71817 1.36296 1.97254 0.91284 0.86196 0.91636 0.82034 0.84411 0.90613 0.94818 1.00150 0.98135 0.93420 0.91139 0.91588 0.92327 0.90748 0.91952 0.92608 0.92241 0.93245 0.90623 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.00 9.96 -92.73 -0.92 -7.92 16 3 C 0.13 3.05 6.68 22.52 0.15 3.20 16 4 C -0.19 -4.14 9.04 22.36 0.20 -3.94 16 5 C -0.06 -1.42 9.72 22.26 0.22 -1.20 16 6 C -0.10 -2.73 4.94 -19.85 -0.10 -2.83 16 7 C 0.09 3.16 5.03 85.56 0.43 3.59 16 8 N -0.53 -20.97 4.41 -875.83 -3.86 -24.83 16 9 C 0.20 9.91 4.20 85.56 0.36 10.27 16 10 C -0.50 -25.46 5.49 25.60 0.14 -25.31 16 11 H 0.09 4.50 3.18 -2.91 -0.01 4.49 16 12 C 0.01 0.36 5.42 84.65 0.46 0.82 16 13 N -0.94 -54.68 13.29 21.45 0.28 -54.39 16 14 Si 0.94 43.06 28.96 68.60 1.99 45.05 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.09 3.46 2.72 45.64 0.12 3.59 16 19 C -0.11 -3.82 5.87 31.70 0.19 -3.63 16 20 C -0.12 -3.75 6.85 31.91 0.22 -3.53 16 21 C -0.12 -4.39 6.13 31.67 0.19 -4.20 16 22 C -0.16 -6.08 5.63 31.32 0.18 -5.91 16 23 C -0.07 -1.95 8.01 22.27 0.18 -1.77 16 24 C -0.08 -2.13 6.33 22.41 0.14 -1.99 16 25 Cl -0.07 -1.65 28.50 -2.72 -0.08 -1.72 16 26 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 27 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 30 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.08 2.55 7.98 -2.38 -0.02 2.53 16 32 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 33 H -0.02 -0.98 5.83 -2.39 -0.01 -0.99 16 34 H 0.00 0.03 8.07 -2.39 -0.02 0.01 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.07 2.35 5.32 -2.38 -0.01 2.34 16 37 H 0.07 2.72 5.67 -2.39 -0.01 2.70 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 2.58 5.32 -2.39 -0.01 2.57 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 3.52 3.93 -2.39 -0.01 3.51 16 45 H 0.14 3.55 7.59 -2.91 -0.02 3.52 16 Total: -1.00 -60.53 356.03 2.60 -57.92 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.00 Total: 17.43 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.19 Total: -31.53 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.58 Total: -79.22 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.92 Total: -7.92 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.99 Total: 45.05 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.72 kcal Total: -60.53 2.60 -57.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138474431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.483 kcal (2) G-P(sol) polarization free energy of solvation -60.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds