Wall clock time and date at job start Tue Mar 31 2020 14:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36832 * 125.06257 * 2 1 4 4 C 1.34239 * 109.92790 * 180.18301 * 3 2 1 5 5 C 1.46487 * 107.00155 * 359.56895 * 4 3 2 6 6 C 1.39625 * 134.03510 * 180.28561 * 5 4 3 7 7 C 1.36622 * 119.76529 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.73895 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47358 * 89.99825 * 8 7 6 10 10 C 1.39127 * 120.00296 * 180.02562 * 9 8 7 11 11 C 1.39169 * 119.62843 * 0.02562 * 10 9 8 12 12 C 1.38209 * 119.16907 * 179.97438 * 11 10 9 13 13 C 1.39454 * 118.44723 * 0.02562 * 12 11 10 14 14 O 1.35817 * 120.40053 * 180.02562 * 13 12 11 15 15 C 1.34814 * 117.00027 * 354.51715 * 14 13 12 16 16 H 1.08004 * 119.99955 * 5.06009 * 15 14 13 17 17 C 1.38634 * 120.00058 * 185.05969 * 15 14 13 18 18 N 1.31572 * 119.99646 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00120 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46839 * 89.99845 * 19 17 15 21 21 H 1.48496 * 109.47366 * 209.99810 * 19 17 15 22 22 H 1.48502 * 109.47243 * 330.00269 * 19 17 15 23 23 C 1.38664 * 119.19444 * 359.97438 * 13 12 11 24 24 N 1.31937 * 120.75581 * 359.74563 * 23 13 12 25 25 C 1.38837 * 120.52901 * 359.97438 * 7 6 5 26 26 C 1.37745 * 120.66215 * 0.02562 * 25 7 6 27 27 C 1.37688 * 125.06348 * 179.69239 * 2 1 3 28 28 H 1.08996 * 109.47161 * 270.30109 * 1 2 3 29 29 H 1.08997 * 109.46909 * 30.30505 * 1 2 3 30 30 H 1.09007 * 109.46777 * 150.30446 * 1 2 3 31 31 H 1.07999 * 125.03798 * 0.03237 * 3 2 1 32 32 H 1.08005 * 126.50310 * 179.83165 * 4 3 2 33 33 H 1.08001 * 120.11577 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.47743 * 209.99961 * 8 7 6 35 35 H 1.09003 * 109.46930 * 330.00438 * 8 7 6 36 36 H 0.96999 * 119.99868 * 0.02562 * 9 8 7 37 37 H 1.08005 * 120.41539 * 359.95479 * 11 10 9 38 38 H 1.08004 * 120.77484 * 180.02562 * 12 11 10 39 39 H 0.97010 * 120.00208 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.61651 * 179.97438 * 23 13 12 41 41 H 1.07998 * 119.66744 * 180.02562 * 25 7 6 42 42 H 1.08005 * 120.10667 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0040 5 6 3.5946 -0.6946 0.0037 6 6 4.6295 -1.6318 0.0090 7 6 4.3361 -2.9662 0.0165 8 6 5.4535 -3.9772 0.0217 9 7 5.8162 -4.2973 1.4045 10 6 6.8309 -5.2132 1.6635 11 6 7.4967 -5.8205 0.6029 12 6 8.5036 -6.7285 0.8711 13 6 8.8139 -7.0023 2.2028 14 8 9.7965 -7.8876 2.5115 15 6 10.3615 -8.5569 1.4866 16 1 10.0866 -8.3193 0.4696 17 6 11.2954 -9.5501 1.7382 18 7 11.6307 -9.8391 2.9773 19 14 12.0778 -10.4778 0.3183 20 1 13.3113 -9.7728 -0.1139 21 1 12.4220 -11.8544 0.7561 22 1 11.1220 -10.5437 -0.8164 23 6 8.1077 -6.3590 3.2079 24 7 7.1559 -5.4932 2.9158 25 6 3.0166 -3.3981 0.0193 26 6 1.9804 -2.4906 0.0141 27 6 2.2560 -1.1270 0.0061 28 1 -0.3633 0.0054 1.0276 29 1 -0.3633 0.8872 -0.5186 30 1 -0.3633 -0.8928 -0.5091 31 1 1.8835 2.1355 0.0005 32 1 4.3937 1.4398 -0.0076 33 1 5.6583 -1.3032 0.0073 34 1 5.1257 -4.8838 -0.4870 35 1 6.3199 -3.5639 -0.4947 36 1 5.3488 -3.8706 2.1396 37 1 7.2298 -5.5853 -0.4168 38 1 9.0375 -7.2147 0.0679 39 1 12.2845 -10.5338 3.1534 40 1 8.3421 -6.5662 4.2415 41 1 2.8006 -4.4562 0.0256 42 1 0.9573 -2.8366 0.0160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162168762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:26 Heat of formation + Delta-G solvation = 64.372076 kcal Electronic energy + Delta-G solvation = -24727.769742 eV Core-core repulsion = 21059.642451 eV Total energy + Delta-G solvation = -3668.127291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20437 -41.22613 -39.26508 -38.48639 -35.95100 -34.21335 -33.75079 -32.86337 -31.99883 -30.19797 -29.39937 -27.66326 -27.02712 -25.90065 -24.40431 -23.52628 -22.89000 -21.62047 -21.13794 -19.97911 -19.09482 -18.03577 -17.79197 -17.55095 -17.12744 -16.22483 -16.19458 -16.14825 -15.79580 -15.61839 -15.29825 -14.96201 -14.91716 -14.66415 -14.38185 -14.01302 -14.00549 -13.69466 -13.60110 -13.50760 -13.34811 -13.22230 -13.07216 -12.69806 -12.41603 -12.12063 -12.07371 -11.77293 -11.55042 -10.97937 -10.59605 -10.55650 -10.37155 -10.26842 -9.11033 -8.55535 -8.40274 -8.22170 -6.04935 0.19635 0.40228 0.53048 0.76749 1.39136 1.48409 1.56337 1.81860 1.96294 2.21150 2.40407 2.92534 3.03055 3.23839 3.57040 3.68877 3.80743 3.87909 3.93457 4.03480 4.13571 4.17863 4.35989 4.39930 4.42655 4.46365 4.51152 4.63567 4.71843 4.72926 4.85415 4.88902 4.93681 4.99964 5.05202 5.17648 5.31428 5.43094 5.53541 5.59060 5.74364 5.82045 5.83495 6.03791 6.25896 6.30024 6.43983 6.78153 7.03895 7.36258 7.85367 8.83077 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.035730 B = 0.001891 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.465712 B =14805.800860 C =14955.725144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.492 5.492 3 C 0.057 3.943 4 C -0.230 4.230 5 C -0.139 4.139 6 C -0.059 4.059 7 C -0.132 4.132 8 C 0.182 3.818 9 N -0.722 5.722 10 C 0.328 3.672 11 C -0.180 4.180 12 C -0.148 4.148 13 C 0.023 3.977 14 O -0.229 6.229 15 C -0.409 4.409 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.252 1.252 23 C 0.065 3.935 24 N -0.517 5.517 25 C -0.088 4.088 26 C -0.133 4.133 27 C 0.081 3.919 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.156 0.844 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.400 0.600 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.271 0.729 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 21.269 -11.439 33.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.175 5.175 3 C -0.068 4.068 4 C -0.254 4.254 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.134 4.134 8 C 0.059 3.941 9 N -0.360 5.360 10 C 0.093 3.907 11 C -0.204 4.204 12 C -0.175 4.175 13 C -0.030 4.030 14 O -0.135 6.135 15 C -0.486 4.486 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.175 1.175 23 C -0.092 4.092 24 N -0.235 5.235 25 C -0.107 4.107 26 C -0.153 4.153 27 C -0.026 4.026 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.221 0.779 32 H 0.174 0.826 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.080 0.920 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.434 21.516 -10.658 34.257 hybrid contribution 0.959 -0.817 -0.491 1.352 sum -23.475 20.699 -11.149 33.224 Atomic orbital electron populations 1.22214 0.75026 1.05688 1.03998 1.44174 1.07275 1.03824 1.62267 1.22392 0.90013 0.92330 1.02105 1.21994 0.97451 0.92345 1.13641 1.19556 0.92642 0.94724 1.07454 1.20317 0.98412 0.91624 0.97516 1.19240 0.94313 0.93412 1.06426 1.20145 0.95158 0.96632 0.82197 1.44245 1.37898 1.46145 1.07715 1.18341 0.91271 0.92414 0.88644 1.21403 0.98689 1.00290 1.00015 1.21578 0.99718 1.00258 0.95974 1.20602 0.92546 0.94921 0.94967 1.83960 1.44680 1.49005 1.35859 1.21772 1.22647 1.16866 0.87287 0.88098 1.26542 0.97324 0.97377 1.00989 1.70200 1.32778 1.31890 1.21202 0.84597 0.78578 0.76959 0.76147 1.18975 1.19907 1.17513 1.21517 0.93554 0.95723 0.98397 1.67021 1.17406 1.17834 1.21199 1.20919 0.91196 0.99909 0.98695 1.20205 1.00331 0.88838 1.05933 1.18564 0.90541 0.89247 1.04238 0.90526 0.87566 0.89541 0.77937 0.82633 0.85797 0.90761 0.91260 0.76521 0.82633 0.84321 0.92022 0.83169 0.84431 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.03 127.77 1.41 1.79 16 2 N -0.49 -6.76 3.18 -539.27 -1.71 -8.48 16 3 C 0.06 0.70 11.29 83.00 0.94 1.64 16 4 C -0.23 -3.92 11.08 23.51 0.26 -3.66 16 5 C -0.14 -2.97 6.37 -20.20 -0.13 -3.10 16 6 C -0.06 -1.28 9.67 22.23 0.22 -1.07 16 7 C -0.13 -2.73 5.21 -20.10 -0.10 -2.84 16 8 C 0.18 3.96 4.99 85.63 0.43 4.39 16 9 N -0.72 -20.29 5.73 -348.68 -2.00 -22.29 16 10 C 0.33 11.90 7.65 133.04 1.02 12.92 16 11 C -0.18 -6.39 9.32 22.49 0.21 -6.18 16 12 C -0.15 -6.41 9.25 22.56 0.21 -6.20 16 13 C 0.02 1.14 6.67 22.66 0.15 1.29 16 14 O -0.23 -13.75 9.77 -23.32 -0.23 -13.98 16 15 C -0.41 -23.63 9.50 67.91 0.64 -22.99 16 16 H 0.10 5.26 5.25 -2.91 -0.02 5.25 16 17 C -0.03 -1.43 5.49 84.83 0.47 -0.97 16 18 N -0.92 -56.81 13.67 21.61 0.30 -56.51 16 19 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 23 C 0.07 3.02 11.14 84.78 0.94 3.96 16 24 N -0.52 -21.55 10.39 -192.67 -2.00 -23.55 16 25 C -0.09 -1.64 9.66 22.30 0.22 -1.42 16 26 C -0.13 -2.31 9.97 22.37 0.22 -2.09 16 27 C 0.08 1.55 6.81 39.03 0.27 1.82 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.09 0.38 8.10 -2.38 -0.02 0.36 16 31 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 35 H 0.07 1.45 7.86 -2.39 -0.02 1.43 16 36 H 0.40 11.14 8.59 -92.71 -0.80 10.35 16 37 H 0.16 4.30 6.70 -2.91 -0.02 4.28 16 38 H 0.14 5.82 5.76 -2.91 -0.02 5.81 16 39 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 40 H 0.15 6.71 8.06 -2.91 -0.02 6.69 16 41 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -76.29 361.76 4.01 -72.28 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.27 Total: 30.44 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 7.36 Total: -22.70 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -5.42 Total: -110.83 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.23 Total: -13.98 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -76.29 4.01 -72.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162168762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.655 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds