Wall clock time and date at job start Tue Mar 31 2020 14:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00235 * 2 1 4 4 C 1.52996 * 109.46836 * 293.95250 * 3 2 1 5 5 C 1.53005 * 109.47114 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47290 * 179.97438 * 5 4 3 7 7 C 1.35899 * 117.00003 * 180.02562 * 6 5 4 8 8 C 1.38762 * 120.04841 * 359.72368 * 7 6 5 9 9 C 1.38128 * 119.96739 * 179.74876 * 8 7 6 10 10 C 1.38265 * 120.07301 * 0.54871 * 9 8 7 11 11 C 1.38363 * 120.09430 * 359.70754 * 10 9 8 12 12 Cl 1.73598 * 119.98682 * 180.02562 * 11 10 9 13 13 C 1.38281 * 120.03320 * 0.02562 * 11 10 9 14 14 C 1.46899 * 110.99938 * 123.95232 * 2 1 3 15 15 C 1.53003 * 109.47197 * 71.45720 * 14 2 1 16 16 C 1.50698 * 115.55038 * 54.04419 * 15 14 2 17 17 H 1.08002 * 119.99905 * 215.59783 * 16 15 14 18 18 C 1.37879 * 119.99953 * 35.31612 * 16 15 14 19 19 N 1.31517 * 120.00072 * 355.67415 * 18 16 15 20 20 Si 1.86799 * 120.00017 * 175.67431 * 18 16 15 21 21 H 1.48493 * 109.47305 * 59.99803 * 20 18 16 22 22 H 1.48505 * 109.47228 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46844 * 300.00100 * 20 18 16 24 24 C 1.52999 * 117.49861 * 199.71665 * 15 14 2 25 25 C 1.53000 * 117.49869 * 268.37774 * 15 14 2 26 26 H 1.08993 * 109.46975 * 301.01823 * 1 2 3 27 27 H 1.08996 * 109.46844 * 61.01807 * 1 2 3 28 28 H 1.08997 * 109.46774 * 181.01652 * 1 2 3 29 29 H 1.08995 * 109.46684 * 53.95411 * 3 2 1 30 30 H 1.09001 * 109.46773 * 173.95321 * 3 2 1 31 31 H 1.08996 * 109.47368 * 300.00080 * 4 3 2 32 32 H 1.09006 * 109.47068 * 60.00077 * 4 3 2 33 33 H 1.08995 * 109.46817 * 300.00412 * 5 4 3 34 34 H 1.09001 * 109.46363 * 60.00152 * 5 4 3 35 35 H 1.08005 * 120.01464 * 0.02562 * 8 7 6 36 36 H 1.08007 * 119.96662 * 180.25355 * 9 8 7 37 37 H 1.07994 * 119.95502 * 179.72548 * 10 9 8 38 38 H 1.07995 * 120.04177 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.47416 * 311.45319 * 14 2 1 40 40 H 1.08998 * 109.47412 * 191.45615 * 14 2 1 41 41 H 0.96996 * 120.00074 * 184.99817 * 19 18 16 42 42 H 1.09004 * 117.49528 * 214.99784 * 24 15 14 43 43 H 1.08996 * 117.49979 * 0.02562 * 24 15 14 44 44 H 1.09004 * 117.49441 * 359.97272 * 25 15 14 45 45 H 1.08999 * 117.50116 * 144.97444 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1794 3.4860 -1.3181 6 8 1.8400 4.1265 -2.5495 7 6 2.2554 5.4102 -2.7123 8 6 2.9701 6.0422 -1.7048 9 6 3.3961 7.3452 -1.8741 10 6 3.1013 8.0243 -3.0418 11 6 2.3842 7.3986 -4.0462 12 17 2.0162 8.2536 -5.5115 13 6 1.9605 6.0924 -3.8833 14 6 1.9954 -0.7659 1.1376 15 6 1.7499 -2.2581 0.9051 16 6 2.2710 -2.8073 -0.3979 17 1 1.7213 -3.5783 -0.9173 18 6 3.4466 -2.3214 -0.9299 19 7 4.0687 -1.3207 -0.3456 20 14 4.1557 -3.0843 -2.4805 21 1 3.1777 -2.9506 -3.5899 22 1 5.4155 -2.3869 -2.8438 23 1 4.4381 -4.5223 -2.2401 24 6 1.7894 -3.1792 2.1261 25 6 0.4526 -2.8547 1.4547 26 1 -0.3633 0.5295 0.8807 27 1 -0.3633 0.4979 -0.8990 28 1 -0.3633 -1.0275 0.0182 29 1 1.5612 1.9273 0.8309 30 1 3.0798 1.3443 0.1083 31 1 2.0659 1.5015 -2.1491 32 1 0.5472 2.0845 -1.4265 33 1 1.7447 4.0416 -0.4872 34 1 3.2636 3.4592 -1.2096 35 1 3.1972 5.5141 -0.7904 36 1 3.9559 7.8358 -1.0915 37 1 3.4314 9.0445 -3.1704 38 1 1.4011 5.6037 -4.6673 39 1 1.4905 -0.4527 2.0514 40 1 3.0659 -0.5845 1.2336 41 1 4.8553 -0.9313 -0.7583 42 1 2.1923 -4.1825 1.9869 43 1 1.9898 -2.7221 3.0951 44 1 -0.2258 -2.1841 1.9822 45 1 -0.0241 -3.6441 0.8736 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307419988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:05 Heat of formation + Delta-G solvation = 2.472560 kcal Electronic energy + Delta-G solvation = -24503.268312 eV Core-core repulsion = 20933.564351 eV Total energy + Delta-G solvation = -3569.703962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.20057 -39.37936 -38.75885 -37.35528 -36.87105 -33.97621 -33.30640 -31.83697 -30.72317 -28.23165 -27.56355 -27.05668 -24.44115 -23.66616 -22.89826 -22.63397 -21.55795 -20.67575 -19.34672 -17.99301 -17.32768 -17.28989 -17.00029 -16.60957 -16.04745 -15.97001 -15.85838 -15.57622 -14.99118 -14.72870 -14.53605 -14.43530 -14.23125 -13.86291 -13.33334 -13.05416 -12.91808 -12.82826 -12.79021 -12.71128 -12.50662 -12.37633 -12.29002 -12.17449 -12.09262 -11.91950 -11.82463 -11.70411 -11.41486 -11.16654 -10.71290 -10.42490 -9.95234 -9.91143 -9.30612 -8.64192 -7.77972 -5.92502 0.07539 0.30611 0.99344 1.47738 1.49667 1.54737 2.15531 2.54265 2.59425 3.14208 3.48180 3.74217 3.79345 3.94478 4.00781 4.05366 4.11947 4.21535 4.32905 4.37939 4.41177 4.46839 4.51666 4.59796 4.68212 4.76331 4.78504 4.81674 4.84515 4.95068 5.00372 5.11908 5.17506 5.20962 5.24273 5.26328 5.32280 5.36348 5.49725 5.57086 5.59218 5.74417 6.14134 6.34047 6.50658 6.70183 6.80531 7.06477 7.67808 9.13845 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002387 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.111974 B =11726.506047 C =12447.474025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.517 5.517 3 C 0.077 3.923 4 C -0.102 4.102 5 C 0.070 3.930 6 O -0.330 6.330 7 C 0.128 3.872 8 C -0.210 4.210 9 C -0.062 4.062 10 C -0.152 4.152 11 C -0.005 4.005 12 Cl -0.063 7.063 13 C -0.166 4.166 14 C 0.121 3.879 15 C 0.037 3.963 16 C -0.491 4.491 17 H 0.035 0.965 18 C 0.054 3.946 19 N -0.878 5.878 20 Si 0.935 3.065 21 H -0.283 1.283 22 H -0.286 1.286 23 H -0.282 1.282 24 C -0.210 4.210 25 C -0.198 4.198 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.136 0.864 39 H -0.013 1.013 40 H 0.095 0.905 41 H 0.254 0.746 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 20.458 -1.819 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.240 5.240 3 C -0.052 4.052 4 C -0.140 4.140 5 C -0.005 4.005 6 O -0.244 6.244 7 C 0.082 3.918 8 C -0.229 4.229 9 C -0.080 4.080 10 C -0.171 4.171 11 C -0.032 4.032 12 Cl -0.034 7.034 13 C -0.185 4.185 14 C -0.006 4.006 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.053 0.947 18 C -0.148 4.148 19 N -0.515 5.515 20 Si 0.763 3.237 21 H -0.209 1.209 22 H -0.211 1.211 23 H -0.208 1.208 24 C -0.249 4.249 25 C -0.235 4.235 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.154 0.846 39 H 0.005 0.995 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.891 20.247 -2.501 20.488 hybrid contribution 0.026 -0.467 -0.215 0.514 sum -1.864 19.780 -2.717 20.053 Atomic orbital electron populations 1.22402 0.88751 1.01382 0.99333 1.61408 1.06147 1.11571 1.44880 1.21749 1.00115 0.88541 0.94768 1.21358 1.01531 0.92498 0.98620 1.22825 1.00627 0.92936 0.84160 1.86048 1.74039 1.23744 1.40519 1.19045 0.94346 0.84055 0.94347 1.21694 1.03213 0.97751 1.00196 1.21294 0.96587 0.92897 0.97185 1.21274 1.00782 1.02025 0.93014 1.20694 1.00552 0.92365 0.89581 1.98374 1.93476 1.76501 1.35087 1.20315 1.06248 0.93916 0.98059 1.21522 1.00836 0.91554 0.86719 1.19111 0.94185 0.91177 0.91925 1.20386 1.06075 1.20442 1.05942 0.94652 1.25205 0.96495 0.94939 0.98177 1.69882 1.19675 1.23560 1.38432 0.86013 0.77642 0.78490 0.81554 1.20889 1.21112 1.20753 1.23010 1.02048 1.01563 0.98287 1.22887 0.90959 1.04112 1.05540 0.96467 0.91752 0.92375 0.95116 0.91631 0.92597 0.91088 0.90063 0.91157 0.83407 0.81592 0.82676 0.84649 0.99477 0.88728 0.93621 0.91309 0.90520 0.90020 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.08 127.69 1.16 2.23 16 2 N -0.52 -21.28 4.06 -922.46 -3.74 -25.02 16 3 C 0.08 2.62 4.95 86.30 0.43 3.04 16 4 C -0.10 -3.11 5.51 30.59 0.17 -2.94 16 5 C 0.07 1.71 4.74 71.98 0.34 2.05 16 6 O -0.33 -9.05 10.14 -92.41 -0.94 -9.99 16 7 C 0.13 3.06 6.69 22.50 0.15 3.21 16 8 C -0.21 -3.96 9.04 22.37 0.20 -3.76 16 9 C -0.06 -0.91 10.04 22.25 0.22 -0.68 16 10 C -0.15 -2.40 9.83 22.31 0.22 -2.18 16 11 C -0.01 -0.10 6.32 22.31 0.14 0.04 16 12 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.23 16 13 C -0.17 -3.81 9.77 22.39 0.22 -3.59 16 14 C 0.12 5.43 3.90 86.30 0.34 5.77 16 15 C 0.04 1.76 1.65 -52.93 -0.09 1.67 16 16 C -0.49 -26.36 8.74 25.60 0.22 -26.14 16 17 H 0.04 1.96 7.82 -2.91 -0.02 1.93 16 18 C 0.05 2.82 5.31 84.65 0.45 3.27 16 19 N -0.88 -45.89 10.10 21.45 0.22 -45.67 16 20 Si 0.94 43.34 29.54 68.60 2.03 45.36 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 C -0.21 -9.24 9.96 30.62 0.30 -8.94 16 25 C -0.20 -8.29 8.36 30.62 0.26 -8.04 16 26 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 2.12 6.52 -2.39 -0.02 2.10 16 28 H 0.06 2.26 6.02 -2.39 -0.01 2.25 16 29 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 30 H 0.07 2.44 7.87 -2.39 -0.02 2.42 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.10 6.57 -2.38 -0.02 2.08 16 33 H 0.08 1.64 7.65 -2.39 -0.02 1.63 16 34 H 0.07 1.65 7.67 -2.39 -0.02 1.63 16 35 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 39 H -0.01 -0.53 8.00 -2.39 -0.02 -0.55 16 40 H 0.09 4.69 5.62 -2.39 -0.01 4.68 16 41 H 0.25 12.92 8.32 -92.71 -0.77 12.15 16 42 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.08 3.09 8.06 -2.38 -0.02 3.07 16 45 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -57.47 377.42 3.19 -54.28 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.97 Total: 17.24 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.73 Total: -34.97 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -3.53 Total: -70.69 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.94 Total: -9.99 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -57.47 3.19 -54.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307419988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.751 kcal (2) G-P(sol) polarization free energy of solvation -57.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds