Wall clock time and date at job start Tue Mar 31 2020 14:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34197 * 125.79887 * 2 1 4 4 H 0.97004 * 125.38100 * 0.02562 * 3 2 1 5 5 C 1.37835 * 109.22759 * 179.83679 * 3 2 1 6 6 C 1.46643 * 125.84788 * 180.15642 * 5 3 2 7 7 O 1.21603 * 119.99909 * 180.32769 * 6 5 3 8 8 O 1.34873 * 120.00309 * 0.32223 * 6 5 3 9 9 C 1.45200 * 117.00022 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46803 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46884 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00118 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99708 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47112 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47377 * 119.99695 * 15 13 11 18 18 H 1.48502 * 109.47239 * 239.99725 * 15 13 11 19 19 C 1.36417 * 108.30274 * 0.42974 * 5 3 2 20 20 C 1.50694 * 126.50418 * 179.76531 * 19 5 3 21 21 C 1.38323 * 125.79899 * 180.31245 * 2 1 3 22 22 C 1.47256 * 126.46029 * 359.97254 * 21 2 1 23 23 O 1.21533 * 119.99455 * 90.03079 * 22 21 2 24 24 O 1.34755 * 120.00321 * 270.02818 * 22 21 2 25 25 C 1.45204 * 117.00338 * 180.02562 * 24 22 21 26 26 C 1.52994 * 109.47626 * 149.99829 * 25 24 22 27 27 C 1.53000 * 109.46745 * 270.00251 * 25 24 22 28 28 H 1.09002 * 109.47152 * 269.68986 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69086 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69067 * 1 2 3 31 31 H 1.09001 * 109.46895 * 299.99873 * 9 8 6 32 32 H 1.08999 * 109.47429 * 60.00356 * 9 8 6 33 33 H 1.09001 * 109.47365 * 299.99675 * 10 9 8 34 34 H 1.09002 * 109.47484 * 60.00007 * 10 9 8 35 35 H 0.96998 * 119.99965 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47494 * 269.97819 * 20 19 5 37 37 H 1.09000 * 109.47552 * 29.97577 * 20 19 5 38 38 H 1.08998 * 109.47296 * 149.97822 * 20 19 5 39 39 H 1.09000 * 109.47287 * 29.99402 * 25 24 22 40 40 H 1.08997 * 109.47285 * 59.99984 * 26 25 24 41 41 H 1.09002 * 109.47383 * 180.02562 * 26 25 24 42 42 H 1.08999 * 109.46995 * 300.00008 * 26 25 24 43 43 H 1.09006 * 109.46873 * 299.98990 * 27 25 24 44 44 H 1.08995 * 109.47554 * 59.99841 * 27 25 24 45 45 H 1.09000 * 109.47303 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2920 1.0884 0.0000 4 1 1.9791 2.0066 0.0004 5 6 3.6131 0.6953 0.0037 6 6 4.7752 1.5897 0.0081 7 8 5.8994 1.1259 0.0052 8 8 4.5974 2.9266 0.0154 9 6 5.7929 3.7507 0.0189 10 6 5.3940 5.2277 0.0265 11 6 6.6348 6.0830 0.0307 12 1 7.6102 5.6195 0.0287 13 6 6.5246 7.4574 0.0383 14 7 5.3368 8.0219 0.0413 15 14 8.0626 8.5176 0.0428 16 1 9.2648 7.6458 0.0377 17 1 8.0720 9.3814 -1.1650 18 1 8.0738 9.3684 1.2599 19 6 3.6544 -0.6682 -0.0036 20 6 4.8922 -1.5276 -0.0078 21 6 2.3161 -1.1219 -0.0061 22 6 1.8674 -2.5244 -0.0132 23 8 1.6824 -3.0978 -1.0687 24 8 1.6620 -3.1721 1.1505 25 6 1.2207 -4.5529 1.0676 26 6 1.7325 -5.3260 2.2846 27 6 -0.3083 -4.5988 1.0401 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 6.3843 3.5290 0.9073 32 1 6.3829 3.5387 -0.8727 33 1 4.8028 5.4490 -0.8621 34 1 4.8037 5.4402 0.9178 35 1 5.2594 8.9888 0.0462 36 1 5.1909 -1.7296 -1.0365 37 1 5.6982 -1.0064 0.5087 38 1 4.6831 -2.4685 0.5012 39 1 1.6141 -5.0061 0.1576 40 1 1.3391 -4.8729 3.1946 41 1 1.4016 -6.3627 2.2221 42 1 2.8218 -5.2932 2.3041 43 1 -0.7018 -4.1458 1.9502 44 1 -0.6729 -4.0481 0.1731 45 1 -0.6397 -5.6353 0.9774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046585765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:59 Heat of formation + Delta-G solvation = -156.460797 kcal Electronic energy + Delta-G solvation = -26815.872827 eV Core-core repulsion = 22798.567833 eV Total energy + Delta-G solvation = -4017.304994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93808 -40.36139 -39.49692 -36.89248 -36.21296 -33.56439 -33.39867 -33.12663 -31.98566 -30.33295 -28.39902 -27.67135 -27.02434 -25.17997 -24.30501 -22.07499 -21.45629 -20.89482 -20.13197 -19.50794 -18.53352 -17.55592 -16.70884 -16.33853 -16.15730 -16.05608 -15.89276 -15.17101 -15.01160 -14.52731 -14.51130 -14.00810 -13.74008 -13.51974 -13.36587 -13.16695 -13.04178 -12.82582 -12.67837 -12.58367 -12.50594 -12.40513 -12.34604 -12.07775 -11.78339 -11.31414 -11.27802 -11.12103 -10.90009 -10.83180 -10.74346 -10.70592 -10.29726 -9.73697 -9.69673 -9.34777 -9.10492 -8.50317 -8.40138 -6.16013 -4.20278 1.19332 1.85257 1.94562 2.53967 2.80427 3.15037 3.19216 3.24406 3.32324 3.37689 4.34720 4.35858 4.42101 4.52912 4.58113 4.68404 4.77313 4.93263 5.05089 5.13592 5.14457 5.21046 5.28910 5.32989 5.37583 5.44875 5.49579 5.55060 5.66976 5.72324 5.75636 5.88714 5.98071 6.02842 6.06667 6.26570 6.34647 6.53504 6.56837 6.85134 7.08310 7.48307 7.54083 7.60429 7.80620 8.08296 8.18342 8.85363 9.44581 10.95535 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.002154 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.261088 B =12997.241757 C =13539.725353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.117 3.883 3 N -0.507 5.507 4 H 0.433 0.567 5 C -0.030 4.030 6 C 0.529 3.471 7 O -0.500 6.500 8 O -0.362 6.362 9 C 0.078 3.922 10 C 0.024 3.976 11 C -0.526 4.526 12 H 0.061 0.939 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.024 4.024 20 C -0.098 4.098 21 C -0.220 4.220 22 C 0.554 3.446 23 O -0.500 6.500 24 O -0.344 6.344 25 C 0.077 3.923 26 C -0.150 4.150 27 C -0.170 4.170 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.252 -23.971 3.099 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.007 4.007 3 N -0.102 5.102 4 H 0.273 0.727 5 C -0.140 4.140 6 C 0.374 3.626 7 O -0.389 6.389 8 O -0.278 6.278 9 C 0.006 3.994 10 C -0.013 4.013 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.031 4.031 20 C -0.155 4.155 21 C -0.228 4.228 22 C 0.397 3.603 23 O -0.387 6.387 24 O -0.261 6.261 25 C 0.022 3.978 26 C -0.207 4.207 27 C -0.227 4.227 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.019 -23.898 2.793 27.357 hybrid contribution 0.659 1.087 -0.106 1.276 sum -12.360 -22.811 2.687 26.083 Atomic orbital electron populations 1.20581 0.86466 1.04506 1.04037 1.20575 0.93648 0.85013 1.01474 1.41603 1.05208 1.09264 1.54142 0.72667 1.18861 0.82237 0.92255 1.20606 1.19681 0.87114 0.82110 0.73730 1.90843 1.24167 1.77239 1.46672 1.86572 1.41575 1.16521 1.83174 1.23699 0.82982 0.91486 1.01275 1.19186 0.98052 0.85230 0.98797 1.21008 0.92245 0.91034 1.52118 0.92099 1.24990 0.96395 0.98005 0.94808 1.69977 1.22436 1.10618 1.49847 0.86402 0.82884 0.80246 0.77716 1.19531 1.20812 1.20817 1.19478 0.93716 0.90847 0.99018 1.20488 0.94084 0.97800 1.03096 1.18155 0.93292 0.89197 1.22122 1.20183 0.72485 0.85980 0.81673 1.90837 1.47468 1.67914 1.32475 1.86763 1.77771 1.27353 1.34257 1.22771 0.95120 0.79197 1.00728 1.21891 1.02298 0.99397 0.97125 1.22215 0.94349 1.03083 1.03068 0.89343 0.89648 0.90055 0.92003 0.92019 0.95395 0.95392 0.92739 0.90573 0.89051 0.91859 0.89677 0.91297 0.90397 0.91541 0.91427 0.91945 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.24 36.01 0.37 -0.33 16 2 C 0.12 1.28 7.21 -81.53 -0.59 0.69 16 3 N -0.51 -6.04 6.01 -5.62 -0.03 -6.07 16 4 H 0.43 4.30 8.96 -40.82 -0.37 3.94 16 5 C -0.03 -0.45 7.02 -82.43 -0.58 -1.03 16 6 C 0.53 9.49 7.93 34.12 0.27 9.76 16 7 O -0.50 -9.81 14.49 -19.34 -0.28 -10.09 16 8 O -0.36 -7.01 10.23 -40.97 -0.42 -7.43 16 9 C 0.08 1.69 5.42 37.16 0.20 1.89 16 10 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 11 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 C -0.02 -0.34 6.21 -104.12 -0.65 -0.99 16 20 C -0.10 -1.28 9.63 36.00 0.35 -0.93 16 21 C -0.22 -2.88 6.01 -105.04 -0.63 -3.51 16 22 C 0.55 7.07 7.11 34.40 0.24 7.32 16 23 O -0.50 -7.32 16.37 -19.29 -0.32 -7.63 16 24 O -0.34 -3.83 9.89 -40.64 -0.40 -4.23 16 25 C 0.08 0.64 3.19 -26.73 -0.09 0.55 16 26 C -0.15 -0.91 9.57 37.15 0.36 -0.55 16 27 C -0.17 -1.13 9.55 37.16 0.35 -0.77 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.29 6.41 -51.93 -0.33 0.95 16 38 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 39 H 0.09 0.78 7.16 -51.93 -0.37 0.40 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -32.96 390.55 -7.73 -40.69 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.94 Total: -1.36 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.95 Total: -0.71 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.70 Total: -31.30 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.42 Total: -29.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.96 -7.73 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.768 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds