Wall clock time and date at job start Tue Mar 31 2020 14:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34197 * 125.79887 * 2 1 4 4 H 0.97004 * 125.38100 * 0.02562 * 3 2 1 5 5 C 1.37835 * 109.22759 * 179.83679 * 3 2 1 6 6 C 1.46643 * 125.84788 * 180.15642 * 5 3 2 7 7 O 1.21603 * 119.99909 * 180.32769 * 6 5 3 8 8 O 1.34873 * 120.00309 * 0.32223 * 6 5 3 9 9 C 1.45200 * 117.00022 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46803 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46884 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00118 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99708 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00259 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47112 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47377 * 119.99695 * 15 13 11 18 18 H 1.48502 * 109.47239 * 239.99725 * 15 13 11 19 19 C 1.36417 * 108.30274 * 0.42974 * 5 3 2 20 20 C 1.50694 * 126.50418 * 179.76531 * 19 5 3 21 21 C 1.38323 * 125.79899 * 180.31245 * 2 1 3 22 22 C 1.47256 * 126.46029 * 359.97254 * 21 2 1 23 23 O 1.21533 * 119.99455 * 90.03079 * 22 21 2 24 24 O 1.34755 * 120.00321 * 270.02818 * 22 21 2 25 25 C 1.45204 * 117.00338 * 180.02562 * 24 22 21 26 26 C 1.52994 * 109.47626 * 149.99829 * 25 24 22 27 27 C 1.53000 * 109.46745 * 270.00251 * 25 24 22 28 28 H 1.09002 * 109.47152 * 269.68986 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69086 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69067 * 1 2 3 31 31 H 1.09001 * 109.46895 * 299.99873 * 9 8 6 32 32 H 1.08999 * 109.47429 * 60.00356 * 9 8 6 33 33 H 1.09001 * 109.47365 * 299.99675 * 10 9 8 34 34 H 1.09002 * 109.47484 * 60.00007 * 10 9 8 35 35 H 0.96998 * 119.99965 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47494 * 269.97819 * 20 19 5 37 37 H 1.09000 * 109.47552 * 29.97577 * 20 19 5 38 38 H 1.08998 * 109.47296 * 149.97822 * 20 19 5 39 39 H 1.09000 * 109.47287 * 29.99402 * 25 24 22 40 40 H 1.08997 * 109.47285 * 59.99984 * 26 25 24 41 41 H 1.09002 * 109.47383 * 180.02562 * 26 25 24 42 42 H 1.08999 * 109.46995 * 300.00008 * 26 25 24 43 43 H 1.09006 * 109.46873 * 299.98990 * 27 25 24 44 44 H 1.08995 * 109.47554 * 59.99841 * 27 25 24 45 45 H 1.09000 * 109.47303 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2920 1.0884 0.0000 4 1 1.9791 2.0066 0.0004 5 6 3.6131 0.6953 0.0037 6 6 4.7752 1.5897 0.0081 7 8 5.8994 1.1259 0.0052 8 8 4.5974 2.9266 0.0154 9 6 5.7929 3.7507 0.0189 10 6 5.3940 5.2277 0.0265 11 6 6.6348 6.0830 0.0307 12 1 7.6102 5.6195 0.0287 13 6 6.5246 7.4574 0.0383 14 7 5.3368 8.0219 0.0413 15 14 8.0626 8.5176 0.0428 16 1 9.2648 7.6458 0.0377 17 1 8.0720 9.3814 -1.1650 18 1 8.0738 9.3684 1.2599 19 6 3.6544 -0.6682 -0.0036 20 6 4.8922 -1.5276 -0.0078 21 6 2.3161 -1.1219 -0.0061 22 6 1.8674 -2.5244 -0.0132 23 8 1.6824 -3.0978 -1.0687 24 8 1.6620 -3.1721 1.1505 25 6 1.2207 -4.5529 1.0676 26 6 1.7325 -5.3260 2.2846 27 6 -0.3083 -4.5988 1.0401 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 6.3843 3.5290 0.9073 32 1 6.3829 3.5387 -0.8727 33 1 4.8028 5.4490 -0.8621 34 1 4.8037 5.4402 0.9178 35 1 5.2594 8.9888 0.0462 36 1 5.1909 -1.7296 -1.0365 37 1 5.6982 -1.0064 0.5087 38 1 4.6831 -2.4685 0.5012 39 1 1.6141 -5.0061 0.1576 40 1 1.3391 -4.8729 3.1946 41 1 1.4016 -6.3627 2.2221 42 1 2.8218 -5.2932 2.3041 43 1 -0.7018 -4.1458 1.9502 44 1 -0.6729 -4.0481 0.1731 45 1 -0.6397 -5.6353 0.9774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046585765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:58 Heat of formation + Delta-G solvation = -174.367514 kcal Electronic energy + Delta-G solvation = -26816.649321 eV Core-core repulsion = 22798.567833 eV Total energy + Delta-G solvation = -4018.081488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.98338 -41.38326 -40.86602 -37.79167 -37.76494 -35.48048 -34.36923 -34.01031 -32.97682 -32.21178 -29.29976 -28.29248 -28.15363 -26.88955 -25.45106 -23.45327 -22.63490 -22.19294 -21.09703 -20.62174 -19.78512 -18.58165 -18.46041 -17.68888 -17.65806 -17.28402 -16.89423 -16.57589 -16.15378 -16.04282 -15.20406 -14.99637 -14.86180 -14.61663 -14.47566 -14.36717 -14.16891 -14.06997 -13.84787 -13.35732 -13.33484 -13.15852 -13.13790 -13.12187 -13.07655 -12.78974 -12.67416 -12.64535 -12.58425 -11.94143 -11.88393 -11.81996 -11.55120 -11.52964 -11.47896 -11.37182 -10.63391 -10.13601 -9.45086 -8.29207 -6.41730 0.01884 0.89005 0.95793 1.39924 1.40631 1.50897 1.57410 1.61981 1.85095 2.07783 2.39090 3.05669 3.52387 3.63603 3.68879 3.84829 3.86825 3.98657 4.10452 4.18952 4.20569 4.23265 4.33282 4.50986 4.63346 4.66374 4.66765 4.71760 4.80231 4.82799 4.86768 4.87657 4.96509 5.02964 5.15318 5.19344 5.26094 5.30995 5.43284 5.44158 5.46391 5.55058 5.71199 6.04553 6.17003 6.60603 6.67715 6.71952 7.28049 8.83436 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.002154 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.261088 B =12997.241757 C =13539.725353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.146 3.854 3 N -0.501 5.501 4 H 0.442 0.558 5 C -0.059 4.059 6 C 0.530 3.470 7 O -0.523 6.523 8 O -0.364 6.364 9 C 0.093 3.907 10 C 0.032 3.968 11 C -0.549 4.549 12 H 0.065 0.935 13 C 0.006 3.994 14 N -0.926 5.926 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.275 1.275 19 C -0.024 4.024 20 C -0.097 4.097 21 C -0.246 4.246 22 C 0.563 3.437 23 O -0.524 6.524 24 O -0.348 6.348 25 C 0.066 3.934 26 C -0.146 4.146 27 C -0.166 4.166 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 -24.874 3.668 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.020 3.980 3 N -0.097 5.097 4 H 0.284 0.716 5 C -0.168 4.168 6 C 0.377 3.623 7 O -0.413 6.413 8 O -0.281 6.281 9 C 0.020 3.980 10 C -0.005 4.005 11 C -0.587 4.587 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.565 5.565 15 Si 0.796 3.204 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.031 4.031 20 C -0.154 4.154 21 C -0.253 4.253 22 C 0.406 3.594 23 O -0.413 6.413 24 O -0.264 6.264 25 C 0.012 3.988 26 C -0.203 4.203 27 C -0.223 4.223 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.963 -24.812 3.378 28.670 hybrid contribution 0.814 1.233 -0.258 1.500 sum -13.149 -23.579 3.120 27.177 Atomic orbital electron populations 1.20811 0.83226 1.05804 1.05818 1.21234 0.95287 0.83876 0.97589 1.41608 1.04215 1.10094 1.53789 0.71608 1.18489 0.82582 0.91858 1.23867 1.20062 0.87941 0.81405 0.72937 1.90823 1.25280 1.77236 1.47981 1.86545 1.40273 1.17538 1.83722 1.23231 0.83544 0.89870 1.01328 1.18986 0.97045 0.87692 0.96812 1.21396 0.93018 0.91918 1.52351 0.91690 1.25940 0.99781 0.99420 0.94118 1.70086 1.24690 1.11232 1.50452 0.85288 0.78834 0.78269 0.77993 1.18672 1.20117 1.20066 1.19719 0.94732 0.90759 0.97901 1.20489 0.93457 0.98198 1.03229 1.18334 0.93096 0.90200 1.23699 1.20049 0.71907 0.85745 0.81697 1.90823 1.48746 1.68407 1.33342 1.86752 1.77493 1.28798 1.33389 1.23120 0.96476 0.77824 1.01389 1.21922 1.01932 1.00367 0.96100 1.22212 0.92826 1.04400 1.02894 0.87116 0.89280 0.87808 0.91853 0.91990 0.97377 0.97294 0.92336 0.90360 0.90291 0.90356 0.90757 0.90889 0.88046 0.92130 0.90611 0.93141 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.24 71.24 0.73 -0.38 16 2 C 0.15 2.95 7.21 42.22 0.30 3.25 16 3 N -0.50 -11.45 6.01 -171.69 -1.03 -12.48 16 4 H 0.44 8.31 8.96 -92.71 -0.83 7.48 16 5 C -0.06 -1.79 7.02 39.97 0.28 -1.51 16 6 C 0.53 19.36 7.93 70.02 0.56 19.91 16 7 O -0.52 -20.97 14.49 19.50 0.28 -20.69 16 8 O -0.36 -14.38 10.23 -57.87 -0.59 -14.97 16 9 C 0.09 4.13 5.42 71.98 0.39 4.52 16 10 C 0.03 1.67 5.35 29.85 0.16 1.83 16 11 C -0.55 -30.74 9.11 25.60 0.23 -30.50 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.01 0.36 5.46 84.65 0.46 0.83 16 14 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 15 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.02 -0.68 6.21 -19.54 -0.12 -0.80 16 20 C -0.10 -2.56 9.63 71.23 0.69 -1.87 16 21 C -0.25 -6.21 6.01 -20.13 -0.12 -6.33 16 22 C 0.56 13.88 7.11 70.19 0.50 14.38 16 23 O -0.52 -15.10 16.37 19.73 0.32 -14.77 16 24 O -0.35 -7.33 9.89 -56.66 -0.56 -7.89 16 25 C 0.07 1.01 3.19 30.59 0.10 1.11 16 26 C -0.15 -1.50 9.57 71.98 0.69 -0.81 16 27 C -0.17 -1.87 9.55 71.98 0.69 -1.19 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.02 7.93 -2.39 -0.02 1.00 16 30 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.28 6.41 -2.39 -0.02 2.27 16 38 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 39 H 0.07 1.30 7.16 -2.39 -0.02 1.29 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -71.62 390.55 6.44 -65.18 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.17 Total: 12.12 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.53 Total: 2.44 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -0.75 Total: -66.70 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.55 Total: -58.32 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -71.62 6.44 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.187 kcal (2) G-P(sol) polarization free energy of solvation -71.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds