Wall clock time and date at job start Tue Mar 31 2020 13:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47465 * 305.00017 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00461 * 11 10 9 14 14 C 1.50707 * 109.47009 * 184.99986 * 11 10 9 15 15 O 1.21283 * 120.00024 * 260.00420 * 14 11 10 16 16 N 1.34775 * 119.99898 * 79.99625 * 14 11 10 17 17 C 1.46924 * 120.63184 * 0.02562 * 16 14 11 18 18 C 1.53193 * 108.77213 * 233.58313 * 17 16 14 19 19 C 1.53046 * 109.31260 * 305.35926 * 18 17 16 20 20 C 1.53041 * 109.53354 * 61.36703 * 19 18 17 21 21 H 1.08997 * 109.49993 * 58.58609 * 20 19 18 22 22 C 1.50706 * 109.49550 * 178.65383 * 20 19 18 23 23 N 1.29031 * 124.91395 * 240.00088 * 22 20 19 24 24 C 1.31785 * 117.12260 * 179.97438 * 23 22 20 25 25 C 1.33631 * 114.49874 * 0.02562 * 24 23 22 26 26 S 1.70972 * 124.91845 * 59.69769 * 22 20 19 27 27 C 1.46930 * 120.62647 * 179.72144 * 16 14 11 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.00896 * 111.00712 * 59.99346 * 13 11 10 34 34 H 1.00902 * 111.00083 * 183.95081 * 13 11 10 35 35 H 1.08999 * 109.58567 * 353.36161 * 17 16 14 36 36 H 1.08995 * 109.58910 * 113.64775 * 17 16 14 37 37 H 1.08997 * 109.50150 * 65.31052 * 18 17 16 38 38 H 1.09000 * 109.49863 * 185.41317 * 18 17 16 39 39 H 1.08997 * 109.46326 * 181.38747 * 19 18 17 40 40 H 1.09003 * 109.45839 * 301.34985 * 19 18 17 41 41 H 1.07997 * 122.74192 * 180.02562 * 24 23 22 42 42 H 1.08003 * 126.03880 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.58457 * 246.20560 * 27 16 14 44 44 H 1.08994 * 109.58559 * 6.62847 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 1 0.7886 -5.0068 0.8421 13 7 0.7284 -5.1189 -1.2548 14 6 2.4551 -6.1298 0.1239 15 8 2.7867 -6.7536 -0.8619 16 7 2.9584 -6.4585 1.3302 17 6 2.5661 -5.7124 2.5336 18 6 3.8317 -5.2259 3.2465 19 6 4.7500 -6.4196 3.5186 20 6 5.1600 -7.0627 2.1918 21 1 5.6661 -6.3239 1.5704 22 6 6.0906 -8.2176 2.4590 23 7 7.2995 -8.3093 2.0175 24 6 7.9788 -9.3898 2.3461 25 6 7.3052 -10.2579 3.1066 26 16 5.6997 -9.5926 3.3971 27 6 3.9049 -7.5739 1.4677 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 1.3478 -5.1033 -2.0511 34 1 0.1640 -5.9553 -1.2521 35 1 1.9547 -4.8560 2.2494 36 1 1.9972 -6.3632 3.1977 37 1 4.3503 -4.5044 2.6152 38 1 3.5590 -4.7542 4.1906 39 1 5.6402 -6.0798 4.0478 40 1 4.2221 -7.1520 4.1294 41 1 8.9964 -9.5595 2.0269 42 1 7.6800 -11.1991 3.4807 43 1 3.4450 -8.3739 2.0480 44 1 4.1770 -7.9460 0.4801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424140794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:23 Heat of formation + Delta-G solvation = -3.711098 kcal Electronic energy + Delta-G solvation = -25240.167109 eV Core-core repulsion = 21704.531461 eV Total energy + Delta-G solvation = -3535.635648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56797 -39.82502 -37.70023 -35.34204 -33.64314 -32.79752 -31.97173 -30.13268 -29.71101 -26.94503 -25.67446 -25.33434 -23.41670 -22.89719 -21.12518 -20.51567 -20.21299 -18.67136 -18.20292 -17.29109 -16.39802 -16.01995 -15.89061 -15.47273 -15.08267 -14.93054 -14.75550 -14.42150 -14.24280 -14.00003 -13.84147 -13.41740 -13.18647 -13.07898 -12.68607 -12.29225 -12.02039 -11.90539 -11.61792 -11.55071 -11.23390 -11.11040 -10.93401 -10.87233 -10.66103 -10.55643 -10.07825 -9.92848 -9.79756 -9.73393 -9.37024 -9.23823 -9.01706 -8.70799 -8.35479 -8.20673 -5.94062 -3.96257 0.37232 1.02952 1.43140 2.50716 2.71323 2.94113 3.36020 3.40805 3.43300 3.77157 4.41947 4.45482 4.50176 4.64453 4.76806 4.83933 4.85963 4.96231 4.99262 5.05482 5.15432 5.28170 5.36012 5.41332 5.45677 5.52832 5.65498 5.67417 5.78854 5.79996 5.83609 5.85673 6.10035 6.37965 6.45511 6.65383 7.06717 7.30210 7.44120 7.49701 7.74878 7.79035 7.95214 8.12623 8.23387 8.47918 9.11515 9.66992 11.16764 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.002844 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.633779 B = 9841.932195 C =10541.251834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.097 4.097 11 C 0.078 3.922 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.487 3.513 15 O -0.552 6.552 16 N -0.610 5.610 17 C 0.098 3.902 18 C -0.134 4.134 19 C -0.111 4.111 20 C -0.030 4.030 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.473 5.473 24 C 0.040 3.960 25 C -0.265 4.265 26 S 0.122 5.878 27 C 0.120 3.880 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.067 0.933 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 -21.044 10.858 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.135 4.135 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.335 5.335 14 C 0.275 3.725 15 O -0.429 6.429 16 N -0.344 5.344 17 C -0.024 4.024 18 C -0.173 4.173 19 C -0.150 4.150 20 C -0.053 4.053 21 H 0.126 0.874 22 C -0.214 4.214 23 N -0.187 5.187 24 C -0.111 4.111 25 C -0.405 4.405 26 S 0.376 5.624 27 C -0.005 4.005 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.193 0.807 42 H 0.194 0.806 43 H 0.085 0.915 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.874 -20.455 10.731 24.745 hybrid contribution 2.204 -0.294 -0.268 2.240 sum 11.078 -20.750 10.463 25.744 Atomic orbital electron populations 1.69961 1.05934 1.26536 1.50751 1.24980 0.94791 0.99008 0.95469 0.86725 0.79621 0.83470 0.78551 1.20327 1.21353 1.20358 1.21231 0.92852 0.91295 1.50708 0.93044 1.19003 0.93494 0.89762 0.98180 1.21711 0.98916 0.92060 1.00833 1.21884 0.93533 0.93285 0.95040 0.88305 1.59015 1.26911 1.44254 1.03289 1.22838 0.82165 0.85619 0.81920 1.90642 1.61238 1.54360 1.36693 1.48205 1.44956 1.33145 1.08103 1.21953 0.97181 0.97109 0.86177 1.21922 0.95973 0.97544 1.01813 1.21665 1.00279 0.98076 0.94980 1.20367 0.93030 0.92864 0.99013 0.87380 1.27011 0.95064 1.00082 0.99247 1.66306 1.05632 1.23621 1.23114 1.21846 1.01665 0.89196 0.98374 1.27121 0.97532 1.06830 1.08973 1.83987 1.14439 1.15037 1.48916 1.21640 0.87849 0.88952 1.02055 0.93040 0.94691 0.96908 0.92824 0.92609 0.83804 0.85458 0.87806 0.91202 0.90321 0.89591 0.90884 0.91354 0.80693 0.80554 0.91503 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 10 C -0.10 -1.91 4.45 -26.73 -0.12 -2.03 16 11 C 0.08 1.29 2.29 -68.86 -0.16 1.13 16 12 H 0.10 1.52 6.80 -51.93 -0.35 1.17 16 13 N -0.81 -13.55 8.44 -5.66 -0.05 -13.60 16 14 C 0.49 7.71 6.94 -10.98 -0.08 7.64 16 15 O -0.55 -10.27 15.66 5.55 0.09 -10.18 16 16 N -0.61 -7.78 2.97 -172.49 -0.51 -8.29 16 17 C 0.10 1.04 5.76 -3.71 -0.02 1.01 16 18 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 19 C -0.11 -0.98 5.05 -26.69 -0.13 -1.11 16 20 C -0.03 -0.32 2.78 -91.41 -0.25 -0.57 16 21 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 22 C 0.06 0.69 6.04 -13.45 -0.08 0.61 16 23 N -0.47 -5.69 10.54 -11.86 -0.13 -5.81 16 24 C 0.04 0.37 11.35 -19.19 -0.22 0.16 16 25 C -0.27 -2.03 11.36 29.12 0.33 -1.70 16 26 S 0.12 1.01 22.46 -107.50 -2.41 -1.41 16 27 C 0.12 1.39 5.69 -3.47 -0.02 1.37 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.02 6.97 -51.93 -0.36 0.66 16 33 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 34 H 0.33 4.86 9.06 -39.29 -0.36 4.50 16 35 H 0.10 1.23 4.83 -51.93 -0.25 0.98 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.51 7.97 -51.93 -0.41 0.10 16 41 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 44 H 0.10 1.32 7.00 -51.93 -0.36 0.96 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -33.14 367.35 -9.81 -42.95 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.59 Total: 7.63 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.46 Total: -7.51 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.05 Total: -53.55 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.41 Total: -1.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.14 -9.81 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.238 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds