Wall clock time and date at job start Tue Mar 31 2020 13:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47465 * 305.00017 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00461 * 11 10 9 14 14 C 1.50707 * 109.47009 * 184.99986 * 11 10 9 15 15 O 1.21283 * 120.00024 * 260.00420 * 14 11 10 16 16 N 1.34775 * 119.99898 * 79.99625 * 14 11 10 17 17 C 1.46924 * 120.63184 * 0.02562 * 16 14 11 18 18 C 1.53193 * 108.77213 * 233.58313 * 17 16 14 19 19 C 1.53046 * 109.31260 * 305.35926 * 18 17 16 20 20 C 1.53041 * 109.53354 * 61.36703 * 19 18 17 21 21 H 1.08997 * 109.49993 * 58.58609 * 20 19 18 22 22 C 1.50706 * 109.49550 * 178.65383 * 20 19 18 23 23 N 1.29031 * 124.91395 * 240.00088 * 22 20 19 24 24 C 1.31785 * 117.12260 * 179.97438 * 23 22 20 25 25 C 1.33631 * 114.49874 * 0.02562 * 24 23 22 26 26 S 1.70972 * 124.91845 * 59.69769 * 22 20 19 27 27 C 1.46930 * 120.62647 * 179.72144 * 16 14 11 28 28 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.00896 * 111.00712 * 59.99346 * 13 11 10 34 34 H 1.00902 * 111.00083 * 183.95081 * 13 11 10 35 35 H 1.08999 * 109.58567 * 353.36161 * 17 16 14 36 36 H 1.08995 * 109.58910 * 113.64775 * 17 16 14 37 37 H 1.08997 * 109.50150 * 65.31052 * 18 17 16 38 38 H 1.09000 * 109.49863 * 185.41317 * 18 17 16 39 39 H 1.08997 * 109.46326 * 181.38747 * 19 18 17 40 40 H 1.09003 * 109.45839 * 301.34985 * 19 18 17 41 41 H 1.07997 * 122.74192 * 180.02562 * 24 23 22 42 42 H 1.08003 * 126.03880 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.58457 * 246.20560 * 27 16 14 44 44 H 1.08994 * 109.58559 * 6.62847 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 1 0.7886 -5.0068 0.8421 13 7 0.7284 -5.1189 -1.2548 14 6 2.4551 -6.1298 0.1239 15 8 2.7867 -6.7536 -0.8619 16 7 2.9584 -6.4585 1.3302 17 6 2.5661 -5.7124 2.5336 18 6 3.8317 -5.2259 3.2465 19 6 4.7500 -6.4196 3.5186 20 6 5.1600 -7.0627 2.1918 21 1 5.6661 -6.3239 1.5704 22 6 6.0906 -8.2176 2.4590 23 7 7.2995 -8.3093 2.0175 24 6 7.9788 -9.3898 2.3461 25 6 7.3052 -10.2579 3.1066 26 16 5.6997 -9.5926 3.3971 27 6 3.9049 -7.5739 1.4677 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8721 -3.6043 -0.8905 32 1 2.8721 -3.6042 0.8895 33 1 1.3478 -5.1033 -2.0511 34 1 0.1640 -5.9553 -1.2521 35 1 1.9547 -4.8560 2.2494 36 1 1.9972 -6.3632 3.1977 37 1 4.3503 -4.5044 2.6152 38 1 3.5590 -4.7542 4.1906 39 1 5.6402 -6.0798 4.0478 40 1 4.2221 -7.1520 4.1294 41 1 8.9964 -9.5595 2.0269 42 1 7.6800 -11.1991 3.4807 43 1 3.4450 -8.3739 2.0480 44 1 4.1770 -7.9460 0.4801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424140794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:21 Heat of formation + Delta-G solvation = -26.623197 kcal Electronic energy + Delta-G solvation = -25241.160652 eV Core-core repulsion = 21704.531461 eV Total energy + Delta-G solvation = -3536.629191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63866 -40.65187 -38.72394 -36.90042 -34.88523 -34.51740 -32.82564 -31.92586 -30.48978 -28.41095 -26.77537 -26.42748 -24.82434 -23.85168 -22.33998 -21.80157 -21.13671 -19.78648 -18.98371 -18.52377 -18.24396 -17.23276 -16.91004 -16.68012 -16.41849 -16.05764 -15.83437 -15.52515 -15.25069 -15.14310 -14.85538 -14.47734 -14.23476 -14.14721 -14.01992 -13.73775 -13.59259 -13.36299 -12.76894 -12.60680 -12.51733 -12.38382 -12.27799 -12.04168 -11.96199 -11.77006 -11.69549 -11.57692 -11.20811 -10.98271 -10.65828 -10.46503 -10.42017 -9.94168 -9.70778 -9.61737 -8.11867 -6.21625 -0.30429 0.37588 0.76428 1.41555 1.44096 1.45328 1.53033 1.78140 1.92892 2.45915 3.03347 3.21235 3.39257 3.59575 3.67431 3.80854 3.90734 4.02233 4.06086 4.16300 4.22599 4.30179 4.37540 4.46748 4.51297 4.58008 4.66312 4.72778 4.75194 4.88465 4.94906 5.05159 5.08093 5.16365 5.23778 5.35959 5.43143 5.59162 5.86507 6.00601 6.06633 6.27046 6.32702 6.50359 6.76572 6.96431 7.00908 7.46230 8.99040 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.002844 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.633779 B = 9841.932195 C =10541.251834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.115 0.885 13 N -0.818 5.818 14 C 0.488 3.512 15 O -0.584 6.584 16 N -0.602 5.602 17 C 0.092 3.908 18 C -0.132 4.132 19 C -0.103 4.103 20 C -0.023 4.023 21 H 0.078 0.922 22 C 0.037 3.963 23 N -0.511 5.511 24 C 0.015 3.985 25 C -0.253 4.253 26 S 0.164 5.836 27 C 0.123 3.877 28 H 0.262 0.738 29 H 0.004 0.996 30 H -0.001 1.001 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.347 0.653 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.193 0.807 42 H 0.209 0.791 43 H 0.092 0.908 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.692 -22.304 13.195 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.006 3.994 10 C -0.120 4.120 11 C -0.029 4.029 12 H 0.132 0.868 13 N -0.347 5.347 14 C 0.276 3.724 15 O -0.465 6.465 16 N -0.335 5.335 17 C -0.029 4.029 18 C -0.170 4.170 19 C -0.142 4.142 20 C -0.046 4.046 21 H 0.096 0.904 22 C -0.241 4.241 23 N -0.226 5.226 24 C -0.134 4.134 25 C -0.392 4.392 26 S 0.417 5.583 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.209 0.791 42 H 0.226 0.774 43 H 0.110 0.890 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.687 -21.725 13.111 27.161 hybrid contribution 1.971 0.009 -0.954 2.190 sum 11.658 -21.716 12.157 27.482 Atomic orbital electron populations 1.70089 1.07521 1.27535 1.51696 1.25844 0.95658 1.02805 0.95030 0.85651 0.78393 0.78893 0.78998 1.19920 1.20921 1.18976 1.21676 0.93249 0.92742 1.50401 0.92836 1.18793 0.93718 0.91030 0.95883 1.21420 0.97773 0.92117 1.00645 1.21677 0.93711 0.91975 0.95532 0.86771 1.59005 1.27174 1.45254 1.03274 1.22512 0.82105 0.85305 0.82520 1.90629 1.62357 1.55478 1.38018 1.48232 1.44166 1.33183 1.07873 1.22193 0.97896 0.97200 0.85629 1.21917 0.95344 0.97485 1.02230 1.21639 1.00463 0.98043 0.94049 1.20210 0.92337 0.92626 0.99457 0.90382 1.26915 0.95051 1.01296 1.00807 1.66283 1.06690 1.25367 1.24227 1.22173 1.02680 0.89129 0.99466 1.27562 0.96954 1.07331 1.07304 1.83745 1.14337 1.12979 1.47213 1.21685 0.88205 0.89005 1.01222 0.92928 0.97761 0.98291 0.94499 0.91259 0.84274 0.84000 0.89127 0.87885 0.92621 0.87332 0.90515 0.89101 0.79052 0.77398 0.88978 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.20 4.86 29.85 0.15 2.34 16 10 C -0.08 -3.27 4.45 30.60 0.14 -3.13 16 11 C 0.09 2.88 2.29 44.17 0.10 2.99 16 12 H 0.11 3.44 6.80 -2.39 -0.02 3.43 16 13 N -0.82 -28.07 8.44 -171.80 -1.45 -29.52 16 14 C 0.49 15.53 6.94 87.66 0.61 16.13 16 15 O -0.58 -22.23 15.66 -3.04 -0.05 -22.28 16 16 N -0.60 -14.88 2.97 -818.01 -2.43 -17.30 16 17 C 0.09 1.76 5.76 86.36 0.50 2.26 16 18 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 19 C -0.10 -1.61 5.05 30.62 0.15 -1.45 16 20 C -0.02 -0.49 2.78 -11.31 -0.03 -0.52 16 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 22 C 0.04 0.75 6.04 88.52 0.53 1.28 16 23 N -0.51 -12.14 10.54 -191.45 -2.02 -14.16 16 24 C 0.02 0.27 11.35 83.65 0.95 1.22 16 25 C -0.25 -3.17 11.36 66.77 0.76 -2.41 16 26 S 0.16 2.25 22.46 -56.49 -1.27 0.99 16 27 C 0.12 2.76 5.69 86.52 0.49 3.25 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.57 6.97 -2.39 -0.02 2.55 16 33 H 0.34 12.25 8.58 -89.70 -0.77 11.48 16 34 H 0.35 10.16 9.06 -89.69 -0.81 9.35 16 35 H 0.09 2.02 4.83 -2.39 -0.01 2.01 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.03 7.97 -2.39 -0.02 1.01 16 41 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.09 1.60 7.79 -2.39 -0.02 1.59 16 44 H 0.07 1.95 7.00 -2.39 -0.02 1.93 16 Total: -1.00 -73.36 367.35 -0.23 -73.59 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.56 Total: 27.89 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.23 Total: -9.70 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -5.61 Total: -116.74 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.27 Total: 0.99 kcal Total: -73.36 -0.23 -73.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424140794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.962 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds