Wall clock time and date at job start Tue Mar 31 2020 14:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00021 * 2 1 4 4 H 1.09004 * 110.01348 * 306.38554 * 3 2 1 5 5 C 1.53870 * 110.03194 * 67.83112 * 3 2 1 6 6 C 1.54266 * 106.59440 * 119.28556 * 5 3 2 7 7 C 1.54886 * 104.19727 * 23.60999 * 6 5 3 8 8 H 1.09004 * 110.91599 * 80.44412 * 7 6 5 9 9 N 1.46506 * 110.75327 * 203.74027 * 7 6 5 10 10 C 1.34774 * 120.00150 * 268.32558 * 9 7 6 11 11 O 1.21608 * 119.99988 * 0.02562 * 10 9 7 12 12 C 1.47423 * 120.00284 * 180.02562 * 10 9 7 13 13 C 1.41300 * 126.41073 * 359.97438 * 12 10 9 14 14 N 1.30449 * 108.01964 * 180.02562 * 13 12 10 15 15 N 1.39931 * 108.89988 * 0.02562 * 14 13 12 16 16 C 1.46498 * 125.75407 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47357 * 269.97182 * 16 15 14 18 18 H 1.08003 * 119.99658 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00493 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00509 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99649 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47232 * 89.99970 * 21 19 17 23 23 H 1.48506 * 109.46917 * 209.99576 * 21 19 17 24 24 H 1.48491 * 109.47226 * 329.99533 * 21 19 17 25 25 C 1.34264 * 108.49126 * 359.97438 * 15 14 13 26 26 C 1.50706 * 126.29027 * 179.73550 * 25 15 14 27 27 C 1.54268 * 110.03145 * 184.99917 * 3 2 1 28 28 H 1.08997 * 109.47446 * 300.00178 * 1 2 3 29 29 H 1.09003 * 109.46901 * 60.00119 * 1 2 3 30 30 H 1.09000 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.02938 * 238.56460 * 5 3 2 32 32 H 1.08996 * 110.03774 * 359.94937 * 5 3 2 33 33 H 1.08995 * 110.48527 * 264.92778 * 6 5 3 34 34 H 1.09010 * 110.48275 * 142.28756 * 6 5 3 35 35 H 0.97003 * 119.99634 * 88.33085 * 9 7 6 36 36 H 1.07991 * 125.98967 * 0.02562 * 13 12 10 37 37 H 1.08999 * 109.47057 * 29.97814 * 16 15 14 38 38 H 1.09003 * 109.46947 * 149.97723 * 16 15 14 39 39 H 0.96995 * 120.00434 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.46683 * 90.00048 * 26 25 15 41 41 H 1.08993 * 109.47067 * 210.00131 * 26 25 15 42 42 H 1.08996 * 109.46910 * 330.00037 * 26 25 15 43 43 H 1.09006 * 110.48343 * 98.42417 * 27 3 2 44 44 H 1.09001 * 110.59523 * 335.84123 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7140 2.2677 -0.8245 5 6 1.8091 2.4038 1.3387 6 6 3.0983 2.9583 1.9792 7 6 4.0552 3.1748 0.7807 8 1 3.8281 4.1079 0.2650 9 7 5.4522 3.1542 1.2214 10 6 6.0662 4.3025 1.5692 11 8 5.4604 5.3557 1.5176 12 6 7.4722 4.2818 2.0121 13 6 8.2999 3.1421 2.1231 14 7 9.4702 3.5329 2.5466 15 7 9.4474 4.9207 2.7248 16 6 10.5676 5.7425 3.1895 17 6 10.5258 5.8454 4.6924 18 1 9.7432 5.3479 5.2461 19 6 11.4870 6.5736 5.3606 20 7 11.4508 6.6630 6.6722 21 14 12.8410 7.4334 4.4029 22 1 12.4014 8.8070 4.0490 23 1 14.0677 7.5058 5.2368 24 1 13.1303 6.6710 3.1619 25 6 8.2262 5.3721 2.3971 26 6 7.7618 6.8050 2.4469 27 6 3.7478 1.9576 -0.1263 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.1006 3.2136 1.1644 32 1 1.3627 1.6508 1.9882 33 1 3.5191 2.2349 2.6775 34 1 2.8977 3.9041 2.4829 35 1 5.9353 2.3140 1.2629 36 1 8.0138 2.1256 1.8970 37 1 11.5072 5.2829 2.8827 38 1 10.4918 6.7392 2.7549 39 1 12.1268 7.1756 7.1423 40 1 7.9600 7.2846 1.4884 41 1 6.6920 6.8332 2.6531 42 1 8.2978 7.3334 3.2353 43 1 4.0211 2.1728 -1.1593 44 1 4.2752 1.0730 0.2305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889252156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:41 Heat of formation + Delta-G solvation = -0.910032 kcal Electronic energy + Delta-G solvation = -24480.548371 eV Core-core repulsion = 20945.034187 eV Total energy + Delta-G solvation = -3535.514185 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.33647 -40.48997 -38.58145 -35.78729 -34.78822 -33.86663 -32.83014 -30.27259 -29.84694 -29.61288 -28.68402 -27.67713 -24.96926 -23.56116 -21.88617 -21.69000 -21.09425 -20.42807 -19.28301 -18.49257 -17.84209 -16.98866 -16.64529 -16.59013 -16.42511 -16.00349 -15.54954 -15.22756 -15.08728 -14.65999 -14.55734 -14.38096 -14.26287 -14.15102 -13.99946 -13.76076 -13.68143 -13.23910 -13.14278 -12.99553 -12.73111 -12.57663 -12.49617 -12.17670 -12.15403 -11.93964 -11.85481 -11.72336 -11.65628 -10.92253 -10.79051 -10.68710 -10.25808 -10.04532 -9.43186 -8.63007 -8.43323 -6.55513 0.65973 0.77383 1.32052 1.33873 1.35262 1.45350 1.63197 1.67767 2.24409 2.35050 2.54594 2.88874 3.48071 3.56593 3.72803 3.77095 3.92674 4.12070 4.19016 4.31112 4.36187 4.37430 4.41180 4.43616 4.45339 4.48376 4.56494 4.59461 4.66364 4.75126 4.85803 4.92578 5.03532 5.05908 5.10013 5.15208 5.17702 5.22180 5.26939 5.59328 5.67690 5.83706 6.20977 6.47547 6.64107 6.81097 7.08440 7.38255 8.73067 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.002202 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.678502 B =12710.695042 C =12843.471587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.301 6.301 3 C -0.044 4.044 4 H 0.103 0.897 5 C -0.111 4.111 6 C -0.132 4.132 7 C 0.148 3.852 8 H 0.088 0.912 9 N -0.709 5.709 10 C 0.607 3.393 11 O -0.581 6.581 12 C -0.330 4.330 13 C 0.081 3.919 14 N -0.334 5.334 15 N -0.339 5.339 16 C 0.234 3.766 17 C -0.553 4.553 18 H 0.025 0.975 19 C 0.022 3.978 20 N -0.934 5.934 21 Si 0.950 3.050 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.243 1.243 25 C 0.147 3.853 26 C -0.093 4.093 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.411 0.589 36 H 0.226 0.774 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.274 0.726 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 -9.780 -17.211 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.074 6.074 3 C -0.174 4.174 4 H 0.122 0.878 5 C -0.151 4.151 6 C -0.172 4.172 7 C 0.042 3.958 8 H 0.106 0.894 9 N -0.359 5.359 10 C 0.396 3.604 11 O -0.463 6.463 12 C -0.345 4.345 13 C -0.107 4.107 14 N -0.154 5.154 15 N -0.115 5.115 16 C 0.114 3.886 17 C -0.591 4.591 18 H 0.044 0.956 19 C -0.178 4.178 20 N -0.572 5.572 21 Si 0.771 3.229 22 H -0.176 1.176 23 H -0.203 1.203 24 H -0.166 1.166 25 C 0.012 3.988 26 C -0.151 4.151 27 C -0.138 4.138 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.242 0.758 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.377 -10.182 -16.733 26.858 hybrid contribution -0.626 1.138 0.401 1.360 sum -19.003 -9.044 -16.331 26.639 Atomic orbital electron populations 1.23436 0.91804 1.07187 1.05803 1.87104 1.10242 1.12086 1.97941 1.23677 0.99436 0.92841 1.01401 0.87847 1.22458 0.97437 1.00644 0.94581 1.22700 0.95595 1.00973 0.97887 1.21916 0.79855 0.99326 0.94708 0.89375 1.45535 1.13127 1.09218 1.68065 1.17104 0.84242 0.83688 0.75348 1.90678 1.67324 1.31916 1.56333 1.19989 0.96996 0.93092 1.24460 1.24509 0.89548 1.00323 0.96276 1.77086 1.24028 0.90492 1.23767 1.48760 1.10548 1.05349 1.46892 1.19889 0.84173 0.90294 0.94268 1.21184 1.13567 1.33899 0.90471 0.95625 1.25831 0.99998 0.96137 0.95831 1.70021 1.36554 1.41483 1.09190 0.85692 0.77889 0.79966 0.79396 1.17617 1.20275 1.16591 1.22001 0.85320 0.98224 0.93269 1.20629 1.03180 0.87523 1.03756 1.22376 0.93038 0.97456 1.00978 0.89739 0.89553 0.87457 0.90081 0.90284 0.91163 0.92309 0.75180 0.75790 0.92570 0.91157 0.91648 0.88187 0.88568 0.91161 0.88974 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.64 113.37 1.21 0.25 16 2 S -0.30 -4.23 21.34 -56.49 -1.21 -5.43 16 3 C -0.04 -0.54 3.42 31.32 0.11 -0.43 16 4 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.11 -1.43 6.36 31.32 0.20 -1.23 16 6 C -0.13 -2.34 6.51 31.67 0.21 -2.13 16 7 C 0.15 2.67 3.27 46.28 0.15 2.82 16 8 H 0.09 1.86 7.55 -2.38 -0.02 1.84 16 9 N -0.71 -15.10 5.17 -439.70 -2.27 -17.37 16 10 C 0.61 18.57 7.81 86.66 0.68 19.25 16 11 O -0.58 -20.88 14.48 -4.06 -0.06 -20.94 16 12 C -0.33 -11.41 6.13 -20.15 -0.12 -11.53 16 13 C 0.08 2.59 11.50 85.65 0.99 3.58 16 14 N -0.33 -13.94 12.50 -56.27 -0.70 -14.65 16 15 N -0.34 -14.96 3.56 -336.69 -1.20 -16.16 16 16 C 0.23 10.85 4.85 85.63 0.42 11.27 16 17 C -0.55 -31.29 9.94 25.60 0.25 -31.04 16 18 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 19 C 0.02 1.24 5.47 84.65 0.46 1.70 16 20 N -0.93 -56.45 13.96 21.44 0.30 -56.15 16 21 Si 0.95 40.35 27.47 68.60 1.88 42.23 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 25 C 0.15 5.84 7.01 42.14 0.30 6.14 16 26 C -0.09 -3.26 9.34 71.24 0.67 -2.59 16 27 C -0.10 -1.30 6.00 31.67 0.19 -1.11 16 28 H 0.08 0.61 7.92 -2.39 -0.02 0.59 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.01 7.37 -2.39 -0.02 0.99 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.41 6.65 7.52 -92.71 -0.70 5.96 16 36 H 0.23 4.61 7.50 -2.92 -0.02 4.59 16 37 H 0.06 2.57 7.20 -2.39 -0.02 2.56 16 38 H 0.07 2.92 7.06 -2.39 -0.02 2.90 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.10 3.39 6.49 -2.39 -0.02 3.38 16 42 H 0.07 2.61 7.71 -2.39 -0.02 2.60 16 43 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.09 1.13 7.69 -2.39 -0.02 1.11 16 Total: -1.00 -72.91 372.99 2.69 -70.22 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.26 Total: 23.30 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.69 Total: -5.06 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -3.88 Total: -104.32 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.23 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -1.21 Total: -5.43 kcal Total: -72.91 2.69 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889252156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.310 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds