Wall clock time and date at job start Tue Mar 31 2020 15:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29031 * 124.91806 * 2 1 4 4 C 1.31789 * 117.11989 * 179.75216 * 3 2 1 5 5 C 1.50702 * 122.74507 * 180.33820 * 4 3 2 6 6 C 1.33634 * 114.50488 * 0.52098 * 4 3 2 7 7 C 1.50695 * 126.03910 * 179.78638 * 6 4 3 8 8 C 1.50705 * 109.46774 * 89.71937 * 7 6 4 9 9 O 1.21277 * 120.00344 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63044 * 359.97438 * 10 8 7 12 12 C 1.53192 * 108.77820 * 126.36870 * 11 10 8 13 13 C 1.53043 * 109.30860 * 54.63429 * 12 11 10 14 14 C 1.53037 * 109.53919 * 298.63563 * 13 12 11 15 15 H 1.09001 * 109.52544 * 301.40006 * 14 13 12 16 16 N 1.46504 * 109.49763 * 181.32066 * 14 13 12 17 17 C 1.36931 * 119.99800 * 155.16323 * 16 14 13 18 18 H 1.08000 * 120.00421 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99606 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99562 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00085 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47191 * 90.00103 * 21 19 17 23 23 H 1.48504 * 109.47219 * 210.00135 * 21 19 17 24 24 H 1.48501 * 109.47102 * 329.99756 * 21 19 17 25 25 C 1.46925 * 120.63041 * 179.97438 * 10 8 7 26 26 S 1.70982 * 124.91647 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47296 * 269.95724 * 1 2 3 28 28 H 1.09001 * 109.47210 * 29.95392 * 1 2 3 29 29 H 1.08998 * 109.47384 * 149.95733 * 1 2 3 30 30 H 1.09008 * 109.46585 * 270.20033 * 5 4 3 31 31 H 1.09001 * 109.47156 * 30.19535 * 5 4 3 32 32 H 1.08997 * 109.47284 * 150.20473 * 5 4 3 33 33 H 1.08996 * 109.46936 * 329.71824 * 7 6 4 34 34 H 1.09003 * 109.47172 * 209.71758 * 7 6 4 35 35 H 1.09006 * 109.58406 * 246.15786 * 11 10 8 36 36 H 1.09002 * 109.59019 * 6.57775 * 11 10 8 37 37 H 1.09001 * 109.49595 * 174.58602 * 12 11 10 38 38 H 1.09000 * 109.49611 * 294.68450 * 12 11 10 39 39 H 1.08997 * 109.45405 * 178.61356 * 13 12 11 40 40 H 1.09001 * 109.45854 * 58.65645 * 13 12 11 41 41 H 0.96999 * 119.99788 * 335.15499 * 16 14 13 42 42 H 0.97008 * 119.99771 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58340 * 353.41744 * 25 10 8 44 44 H 1.09003 * 109.58494 * 113.70309 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8792 0.0051 5 6 4.5308 2.0244 0.0132 6 6 3.9354 -0.4007 -0.0015 7 6 5.3574 -0.8995 -0.0025 8 6 5.8319 -1.0670 1.4181 9 8 5.0888 -0.8064 2.3404 10 7 7.0826 -1.5053 1.6635 11 6 7.9947 -1.8245 0.5567 12 6 9.2983 -1.0439 0.7513 13 6 9.8660 -1.3450 2.1403 14 6 8.8685 -0.8938 3.2097 15 1 8.6736 0.1730 3.0991 16 7 9.4262 -1.1536 4.5393 17 6 9.0046 -0.4176 5.6143 18 1 8.2612 0.3546 5.4820 19 6 9.5327 -0.6642 6.8742 20 7 9.1277 0.0435 7.9074 21 14 10.8178 -2.0003 7.1032 22 1 12.1727 -1.4203 6.9216 23 1 10.7022 -2.5694 8.4699 24 1 10.6002 -3.0735 6.1001 25 6 7.5598 -1.6731 3.0430 26 16 2.4856 -1.4020 -0.0006 27 1 -0.3634 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 4.7686 2.3063 -1.0126 31 1 4.0897 2.8761 0.5310 32 1 5.4424 1.7191 0.5268 33 1 5.9946 -0.1796 -0.5159 34 1 5.4055 -1.8592 -0.5171 35 1 8.2059 -2.8939 0.5542 36 1 7.5353 -1.5385 -0.3895 37 1 10.0191 -1.3442 -0.0092 38 1 9.0994 0.0242 0.6633 39 1 10.8064 -0.8100 2.2720 40 1 10.0414 -2.4165 2.2364 41 1 10.0940 -1.8470 4.6581 42 1 9.4970 -0.1285 8.7878 43 1 6.8135 -1.2871 3.7372 44 1 7.7333 -2.7304 3.2435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999745383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:49 Heat of formation + Delta-G solvation = 16.479482 kcal Electronic energy + Delta-G solvation = -25185.545722 eV Core-core repulsion = 21650.785603 eV Total energy + Delta-G solvation = -3534.760119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38795 -39.63999 -37.43532 -34.67082 -33.93878 -32.38709 -31.41245 -30.91280 -29.30708 -28.74958 -26.19768 -24.62385 -23.73974 -22.82745 -21.78382 -20.58129 -19.32507 -18.48311 -18.04917 -17.57847 -17.15444 -15.83665 -15.49170 -15.14653 -14.74872 -14.68069 -14.32364 -14.24495 -13.69975 -13.62389 -13.41126 -13.35189 -13.08990 -13.03993 -12.64498 -12.60905 -12.48849 -12.32462 -12.12870 -12.02247 -11.64702 -11.26026 -11.18496 -10.95576 -10.77173 -10.69046 -10.33151 -9.92815 -9.76484 -9.71290 -9.59909 -9.26945 -9.12025 -8.61335 -8.42908 -7.31502 -5.78418 -3.16077 0.59391 1.24495 1.64774 2.67007 2.74098 3.17463 3.35041 3.37126 3.43679 3.95366 4.47965 4.56249 4.59611 4.76434 4.79609 4.84370 4.95786 5.11421 5.12591 5.18385 5.21783 5.32155 5.33338 5.42970 5.45852 5.50536 5.58217 5.66462 5.72650 5.77555 5.85896 5.86801 5.98608 6.03407 6.19503 6.21953 6.35182 6.61722 6.70134 6.87491 7.56894 7.68012 7.97152 8.32773 8.40424 9.17140 9.88674 10.06957 11.39574 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.003034 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.873841 B = 9227.011629 C = 9936.342828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.044 3.956 3 N -0.470 5.470 4 C 0.079 3.921 5 C -0.079 4.079 6 C -0.205 4.205 7 C -0.061 4.061 8 C 0.509 3.491 9 O -0.525 6.525 10 N -0.608 5.608 11 C 0.105 3.895 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.174 3.826 15 H 0.059 0.941 16 N -0.742 5.742 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.093 3.907 26 S 0.124 5.876 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.094 0.906 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 -4.138 -24.346 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.234 4.234 3 N -0.186 5.186 4 C -0.053 4.053 5 C -0.138 4.138 6 C -0.326 4.326 7 C -0.104 4.104 8 C 0.295 3.705 9 O -0.401 6.401 10 N -0.342 5.342 11 C -0.018 4.018 12 C -0.169 4.169 13 C -0.168 4.168 14 C 0.063 3.937 15 H 0.077 0.923 16 N -0.384 5.384 17 C -0.378 4.378 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.577 5.577 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.031 4.031 26 S 0.380 5.620 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.416 -4.395 -23.648 26.211 hybrid contribution 1.576 -0.389 0.429 1.679 sum -8.841 -4.784 -23.219 25.301 Atomic orbital electron populations 1.20424 0.85259 1.03953 1.03968 1.26873 1.01585 0.91105 1.03808 1.66120 1.04451 1.31649 1.16370 1.20073 0.90172 0.93945 1.01067 1.20366 0.96125 0.94880 1.02469 1.24942 0.98417 0.95725 1.13539 1.20086 0.90614 1.03454 0.96209 1.20377 0.81793 0.77608 0.90707 1.90756 1.54122 1.49305 1.45883 1.48248 1.12121 1.65654 1.08197 1.21767 0.90808 0.99844 0.89395 1.21876 0.96225 1.00867 0.97887 1.21865 0.99612 1.01381 0.93979 1.20465 0.90392 0.97878 0.84977 0.92255 1.42730 1.48745 1.43038 1.03932 1.19094 1.19873 1.13192 0.85658 0.89090 1.24691 0.99708 0.99018 0.95492 1.69711 1.46160 1.42537 0.99333 0.86549 0.82372 0.82446 0.77117 1.21050 1.21708 1.20333 1.22707 0.99263 1.00599 0.80560 1.83780 0.97487 1.12272 1.68425 0.89550 0.89358 0.90231 0.90740 0.90383 0.90731 0.86922 0.87945 0.91330 0.90232 0.90855 0.91310 0.91281 0.92145 0.80476 0.92984 0.88724 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 36.00 0.38 -0.21 16 2 C 0.04 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.47 -6.64 10.53 -8.06 -0.08 -6.72 16 4 C 0.08 1.08 6.74 -84.22 -0.57 0.51 16 5 C -0.08 -0.90 9.82 36.01 0.35 -0.55 16 6 C -0.21 -2.61 5.08 -35.92 -0.18 -2.79 16 7 C -0.06 -0.65 3.97 -29.03 -0.12 -0.77 16 8 C 0.51 7.69 7.69 -10.98 -0.08 7.61 16 9 O -0.53 -10.56 15.45 5.56 0.09 -10.48 16 10 N -0.61 -8.61 2.97 -172.74 -0.51 -9.12 16 11 C 0.11 1.02 6.34 -3.71 -0.02 0.99 16 12 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 13 C -0.13 -1.81 5.35 -26.69 -0.14 -1.95 16 14 C 0.17 3.24 2.92 -67.79 -0.20 3.04 16 15 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 16 N -0.74 -17.21 4.93 -53.29 -0.26 -17.47 16 17 C -0.25 -7.02 10.41 -15.06 -0.16 -7.18 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 21 Si 0.88 21.94 27.73 -169.99 -4.71 17.23 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 C 0.09 1.68 6.02 -3.69 -0.02 1.66 16 26 S 0.12 1.42 23.18 -107.50 -2.49 -1.07 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 33 H 0.11 0.92 6.99 -51.93 -0.36 0.55 16 34 H 0.10 0.82 7.94 -51.93 -0.41 0.41 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.09 2.10 7.00 -51.93 -0.36 1.73 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -36.06 368.18 -9.50 -45.56 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.72 Total: 5.81 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.12 Total: -0.58 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.09 Total: -62.03 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.49 Total: -1.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.06 -9.50 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999745383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.042 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds