Wall clock time and date at job start Tue Mar 31 2020 15:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29031 * 124.91806 * 2 1 4 4 C 1.31789 * 117.11989 * 179.75216 * 3 2 1 5 5 C 1.50702 * 122.74507 * 180.33820 * 4 3 2 6 6 C 1.33634 * 114.50488 * 0.52098 * 4 3 2 7 7 C 1.50695 * 126.03910 * 179.78638 * 6 4 3 8 8 C 1.50705 * 109.46774 * 89.71937 * 7 6 4 9 9 O 1.21277 * 120.00344 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63044 * 359.97438 * 10 8 7 12 12 C 1.53192 * 108.77820 * 126.36870 * 11 10 8 13 13 C 1.53043 * 109.30860 * 54.63429 * 12 11 10 14 14 C 1.53037 * 109.53919 * 298.63563 * 13 12 11 15 15 H 1.09001 * 109.52544 * 301.40006 * 14 13 12 16 16 N 1.46504 * 109.49763 * 181.32066 * 14 13 12 17 17 C 1.36931 * 119.99800 * 155.16323 * 16 14 13 18 18 H 1.08000 * 120.00421 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99606 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99562 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00085 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47191 * 90.00103 * 21 19 17 23 23 H 1.48504 * 109.47219 * 210.00135 * 21 19 17 24 24 H 1.48501 * 109.47102 * 329.99756 * 21 19 17 25 25 C 1.46925 * 120.63041 * 179.97438 * 10 8 7 26 26 S 1.70982 * 124.91647 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47296 * 269.95724 * 1 2 3 28 28 H 1.09001 * 109.47210 * 29.95392 * 1 2 3 29 29 H 1.08998 * 109.47384 * 149.95733 * 1 2 3 30 30 H 1.09008 * 109.46585 * 270.20033 * 5 4 3 31 31 H 1.09001 * 109.47156 * 30.19535 * 5 4 3 32 32 H 1.08997 * 109.47284 * 150.20473 * 5 4 3 33 33 H 1.08996 * 109.46936 * 329.71824 * 7 6 4 34 34 H 1.09003 * 109.47172 * 209.71758 * 7 6 4 35 35 H 1.09006 * 109.58406 * 246.15786 * 11 10 8 36 36 H 1.09002 * 109.59019 * 6.57775 * 11 10 8 37 37 H 1.09001 * 109.49595 * 174.58602 * 12 11 10 38 38 H 1.09000 * 109.49611 * 294.68450 * 12 11 10 39 39 H 1.08997 * 109.45405 * 178.61356 * 13 12 11 40 40 H 1.09001 * 109.45854 * 58.65645 * 13 12 11 41 41 H 0.96999 * 119.99788 * 335.15499 * 16 14 13 42 42 H 0.97008 * 119.99771 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.58340 * 353.41744 * 25 10 8 44 44 H 1.09003 * 109.58494 * 113.70309 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8792 0.0051 5 6 4.5308 2.0244 0.0132 6 6 3.9354 -0.4007 -0.0015 7 6 5.3574 -0.8995 -0.0025 8 6 5.8319 -1.0670 1.4181 9 8 5.0888 -0.8064 2.3404 10 7 7.0826 -1.5053 1.6635 11 6 7.9947 -1.8245 0.5567 12 6 9.2983 -1.0439 0.7513 13 6 9.8660 -1.3450 2.1403 14 6 8.8685 -0.8938 3.2097 15 1 8.6736 0.1730 3.0991 16 7 9.4262 -1.1536 4.5393 17 6 9.0046 -0.4176 5.6143 18 1 8.2612 0.3546 5.4820 19 6 9.5327 -0.6642 6.8742 20 7 9.1277 0.0435 7.9074 21 14 10.8178 -2.0003 7.1032 22 1 12.1727 -1.4203 6.9216 23 1 10.7022 -2.5694 8.4699 24 1 10.6002 -3.0735 6.1001 25 6 7.5598 -1.6731 3.0430 26 16 2.4856 -1.4020 -0.0006 27 1 -0.3634 -0.0008 1.0277 28 1 -0.3634 0.8904 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 4.7686 2.3063 -1.0126 31 1 4.0897 2.8761 0.5310 32 1 5.4424 1.7191 0.5268 33 1 5.9946 -0.1796 -0.5159 34 1 5.4055 -1.8592 -0.5171 35 1 8.2059 -2.8939 0.5542 36 1 7.5353 -1.5385 -0.3895 37 1 10.0191 -1.3442 -0.0092 38 1 9.0994 0.0242 0.6633 39 1 10.8064 -0.8100 2.2720 40 1 10.0414 -2.4165 2.2364 41 1 10.0940 -1.8470 4.6581 42 1 9.4970 -0.1285 8.7878 43 1 6.8135 -1.2871 3.7372 44 1 7.7333 -2.7304 3.2435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999745383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:48 Heat of formation + Delta-G solvation = -9.349080 kcal Electronic energy + Delta-G solvation = -25186.665732 eV Core-core repulsion = 21650.785603 eV Total energy + Delta-G solvation = -3535.880129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46061 -40.68023 -38.75661 -36.32653 -34.87956 -33.99444 -32.89805 -31.93821 -30.35956 -30.03499 -27.26962 -25.78358 -25.43501 -23.67854 -23.11049 -21.99411 -20.49892 -19.63497 -19.41450 -18.93838 -18.28795 -16.98466 -16.78919 -16.45149 -16.07224 -15.81374 -15.71742 -15.40737 -15.03123 -14.70429 -14.50636 -14.37395 -14.22418 -14.13020 -13.96378 -13.80714 -13.54891 -13.29151 -13.21168 -12.98787 -12.90771 -12.82542 -12.52331 -12.17625 -12.09021 -11.91919 -11.86393 -11.75158 -11.34952 -11.15020 -10.94648 -10.64513 -10.20143 -9.83101 -9.51186 -9.25972 -8.06382 -5.42565 -0.31919 0.38482 0.74063 1.34910 1.40888 1.47804 1.59716 1.70504 2.08039 2.45563 3.15043 3.24330 3.51442 3.53159 3.74468 3.96810 4.02080 4.04726 4.08979 4.15567 4.29756 4.37069 4.43278 4.46470 4.53030 4.62407 4.64963 4.69194 4.75549 4.78671 4.87669 4.93172 4.94988 5.04863 5.07010 5.16833 5.33058 5.37869 5.47387 5.50795 5.72810 6.17538 6.46050 6.76637 7.02865 7.18362 7.76083 7.97872 9.15596 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.003034 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.873841 B = 9227.011629 C = 9936.342828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 N -0.505 5.505 4 C 0.057 3.943 5 C -0.077 4.077 6 C -0.223 4.223 7 C -0.050 4.050 8 C 0.503 3.497 9 O -0.589 6.589 10 N -0.605 5.605 11 C 0.097 3.903 12 C -0.123 4.123 13 C -0.122 4.122 14 C 0.170 3.830 15 H 0.029 0.971 16 N -0.744 5.744 17 C -0.237 4.237 18 H 0.042 0.958 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.297 1.297 24 H -0.246 1.246 25 C 0.106 3.894 26 S 0.139 5.861 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.370 0.630 42 H 0.259 0.741 43 H 0.038 0.962 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -6.697 -28.238 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.241 4.241 3 N -0.221 5.221 4 C -0.075 4.075 5 C -0.136 4.136 6 C -0.344 4.344 7 C -0.092 4.092 8 C 0.291 3.709 9 O -0.469 6.469 10 N -0.338 5.338 11 C -0.024 4.024 12 C -0.161 4.161 13 C -0.161 4.161 14 C 0.061 3.939 15 H 0.048 0.952 16 N -0.388 5.388 17 C -0.368 4.368 18 H 0.060 0.940 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.170 1.170 25 C -0.020 4.020 26 S 0.396 5.604 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.204 0.796 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.841 -6.980 -27.651 29.857 hybrid contribution 0.965 0.487 1.617 1.945 sum -7.876 -6.493 -26.034 27.964 Atomic orbital electron populations 1.20613 0.82789 1.05580 1.04703 1.27572 1.03212 0.90900 1.02375 1.66165 1.05041 1.32895 1.18004 1.20448 0.90533 0.95009 1.01487 1.20385 0.95343 0.93939 1.03907 1.25240 0.99758 0.95765 1.13614 1.20186 0.89790 1.06202 0.92990 1.21250 0.81344 0.76135 0.92127 1.90736 1.55947 1.51972 1.48235 1.48305 1.12800 1.65059 1.07598 1.22232 0.89823 1.01217 0.89088 1.21897 0.97207 1.00888 0.96155 1.21810 0.97904 1.02070 0.94282 1.20661 0.92181 0.96493 0.84602 0.95246 1.42667 1.49101 1.42650 1.04355 1.18941 1.18117 1.12184 0.87592 0.93998 1.25650 1.02885 1.02342 0.94890 1.69927 1.48484 1.45223 0.99966 0.85272 0.78942 0.79452 0.77221 1.19849 1.22432 1.17002 1.22139 0.97225 1.00117 0.82497 1.83613 0.97035 1.11820 1.67939 0.89098 0.88695 0.87638 0.88001 0.91668 0.91301 0.83713 0.84274 0.89190 0.86016 0.86626 0.91780 0.91403 0.90604 0.79557 0.93241 0.94319 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.46 71.23 0.75 -0.36 16 2 C 0.04 0.85 7.39 88.52 0.65 1.51 16 3 N -0.50 -14.29 10.53 -179.40 -1.89 -16.18 16 4 C 0.06 1.53 6.74 41.52 0.28 1.81 16 5 C -0.08 -1.73 9.82 71.24 0.70 -1.03 16 6 C -0.22 -5.39 5.08 24.64 0.13 -5.26 16 7 C -0.05 -0.92 3.97 29.10 0.12 -0.80 16 8 C 0.50 14.86 7.69 87.66 0.67 15.54 16 9 O -0.59 -24.85 15.45 -3.02 -0.05 -24.90 16 10 N -0.60 -16.22 2.97 -818.82 -2.43 -18.65 16 11 C 0.10 1.41 6.34 86.36 0.55 1.95 16 12 C -0.12 -1.92 6.08 30.67 0.19 -1.73 16 13 C -0.12 -3.05 5.35 30.62 0.16 -2.88 16 14 C 0.17 6.39 2.92 45.08 0.13 6.52 16 15 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 16 N -0.74 -34.89 4.93 -322.51 -1.59 -36.48 16 17 C -0.24 -14.10 10.41 84.04 0.88 -13.22 16 18 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.99 -65.49 13.97 21.65 0.30 -65.19 16 21 Si 0.97 45.69 27.73 68.60 1.90 47.59 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 25 C 0.11 3.92 6.02 86.37 0.52 4.44 16 26 S 0.14 3.04 23.18 -56.49 -1.31 1.73 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.59 7.36 -2.39 -0.02 1.58 16 33 H 0.15 1.73 6.99 -2.39 -0.02 1.71 16 34 H 0.14 1.55 7.94 -2.39 -0.02 1.53 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.12 0.82 5.93 -2.39 -0.01 0.81 16 37 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.37 16.08 5.66 -92.71 -0.52 15.55 16 42 H 0.26 16.26 8.31 -92.70 -0.77 15.49 16 43 H 0.04 1.85 7.00 -2.39 -0.02 1.83 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -87.73 368.18 1.55 -86.19 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.43 Total: 22.99 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.18 Total: 2.90 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -5.61 Total: -136.50 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.31 Total: 1.73 kcal Total: -87.73 1.55 -86.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999745383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.837 kcal (2) G-P(sol) polarization free energy of solvation -87.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds