Wall clock time and date at job start Tue Mar 31 2020 15:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30938 * 122.90636 * 2 1 4 4 C 1.29431 * 117.36547 * 179.97438 * 3 2 1 5 5 C 1.50705 * 124.80432 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47183 * 60.02687 * 5 4 3 7 7 C 1.53000 * 109.46928 * 300.02609 * 5 4 3 8 8 S 1.70948 * 110.39001 * 0.24608 * 4 3 2 9 9 C 1.35664 * 122.90299 * 179.97438 * 2 1 3 10 10 C 1.46680 * 126.13187 * 0.03612 * 9 2 1 11 11 O 1.21689 * 120.00041 * 350.92837 * 10 9 2 12 12 N 1.34768 * 120.00170 * 170.93173 * 10 9 2 13 13 C 1.46501 * 120.00327 * 0.53742 * 12 10 9 14 14 C 1.46508 * 120.00109 * 180.53718 * 12 10 9 15 15 C 1.53949 * 113.74270 * 218.74163 * 14 12 10 16 16 N 1.47813 * 86.03584 * 222.08446 * 15 14 12 17 17 C 1.36935 * 134.45757 * 204.64271 * 16 15 14 18 18 H 1.07998 * 119.99838 * 179.86683 * 17 16 15 19 19 C 1.38809 * 119.99725 * 359.86638 * 17 16 15 20 20 N 1.31618 * 120.00329 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47150 * 90.00399 * 21 19 17 23 23 H 1.48507 * 109.46882 * 210.00191 * 21 19 17 24 24 H 1.48501 * 109.47159 * 330.00101 * 21 19 17 25 25 C 1.47586 * 91.05091 * 24.54730 * 16 15 14 26 26 H 1.08996 * 109.46647 * 90.02541 * 1 2 3 27 27 H 1.08999 * 109.46853 * 210.02588 * 1 2 3 28 28 H 1.09000 * 109.46767 * 330.02883 * 1 2 3 29 29 H 1.08995 * 109.47173 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.47241 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47286 * 59.99456 * 6 5 4 32 32 H 1.09008 * 109.46975 * 299.99799 * 6 5 4 33 33 H 1.09000 * 109.46736 * 179.97438 * 7 5 4 34 34 H 1.09001 * 109.47361 * 300.00230 * 7 5 4 35 35 H 1.09003 * 109.47014 * 60.00373 * 7 5 4 36 36 H 1.09006 * 109.46995 * 83.50613 * 13 12 10 37 37 H 1.08998 * 109.47581 * 203.50936 * 13 12 10 38 38 H 1.09000 * 109.46478 * 323.51401 * 13 12 10 39 39 H 1.08998 * 112.94307 * 350.33241 * 14 12 10 40 40 H 1.08998 * 113.76808 * 336.34585 * 15 14 12 41 41 H 1.08999 * 113.76807 * 107.74700 * 15 14 12 42 42 H 0.96996 * 119.99982 * 180.02562 * 20 19 17 43 43 H 1.08992 * 113.77256 * 221.14781 * 25 16 15 44 44 H 1.09005 * 113.76748 * 89.75513 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4823 2.1229 0.0000 6 6 4.2628 2.9790 1.2489 7 6 4.2627 2.9780 -1.2495 8 16 3.9447 -0.6781 -0.0058 9 6 2.2440 -1.1390 0.0005 10 6 1.7192 -2.5087 0.0004 11 8 0.5296 -2.7045 0.1659 12 7 2.5544 -3.5504 -0.1830 13 6 3.9882 -3.3155 -0.3705 14 6 2.0285 -4.9177 -0.1949 15 6 2.9433 -5.9398 0.5040 16 7 2.6306 -6.8390 -0.6267 17 6 2.6237 -8.1976 -0.7982 18 1 2.3464 -8.6199 -1.7526 19 6 2.9730 -9.0317 0.2549 20 7 3.3104 -8.5170 1.4183 21 14 2.9628 -10.8851 0.0212 22 1 4.2983 -11.3320 -0.4495 23 1 2.6470 -11.5452 1.3135 24 1 1.9347 -11.2514 -0.9859 25 6 2.3269 -5.6853 -1.4955 26 1 -0.3632 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 5.5007 1.7346 0.0002 30 1 4.9681 3.8100 1.2484 31 1 4.4191 2.3698 2.1392 32 1 3.2443 3.3675 1.2488 33 1 4.9681 3.8090 -1.2496 34 1 4.4190 2.3681 -2.1393 35 1 3.2442 3.3665 -1.2496 36 1 4.4687 -3.2063 0.6018 37 1 4.4286 -4.1600 -0.9006 38 1 4.1342 -2.4053 -0.9521 39 1 0.9863 -4.9749 0.1191 40 1 3.9891 -5.6358 0.5474 41 1 2.5602 -6.2885 1.4631 42 1 3.5549 -9.0999 2.1540 43 1 1.4528 -5.8312 -2.1300 44 1 3.1913 -5.3063 -2.0408 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044287621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:25 Heat of formation + Delta-G solvation = 66.124758 kcal Electronic energy + Delta-G solvation = -25105.545295 eV Core-core repulsion = 21572.937957 eV Total energy + Delta-G solvation = -3532.607338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.45552 -39.55188 -37.62681 -35.76850 -34.65087 -32.08908 -31.17497 -28.71090 -27.60323 -27.49610 -26.79112 -25.35568 -24.88877 -23.56116 -21.59494 -20.93518 -19.02681 -18.54455 -17.96482 -16.90199 -16.52974 -16.04298 -15.75796 -15.44351 -14.92592 -14.60844 -14.46550 -13.93229 -13.84434 -13.66163 -13.53571 -13.02408 -12.83652 -12.64267 -12.54697 -12.35748 -12.17530 -11.97889 -11.72986 -11.62246 -11.49716 -11.41845 -11.36867 -11.28157 -10.93500 -10.74664 -10.38694 -10.11008 -9.76698 -9.62507 -9.51646 -9.39001 -8.87608 -8.82166 -8.21357 -6.97684 -5.83793 -3.17073 0.21708 1.13336 1.53897 2.42868 3.11399 3.26018 3.36588 3.41567 3.43500 3.79752 4.41308 4.47864 4.59637 4.67202 4.72833 5.01846 5.07462 5.11861 5.13585 5.30712 5.31699 5.43369 5.43899 5.50671 5.57930 5.60001 5.67536 5.69081 5.76561 5.84643 5.89133 5.97757 5.99397 6.07381 6.32455 6.38091 6.50878 6.65378 7.12088 7.23672 7.44276 7.54678 7.64862 7.89702 8.27282 8.97026 9.63240 10.48880 11.33368 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.002747 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.689884 B =10191.113457 C =10685.070585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.147 3.853 3 N -0.477 5.477 4 C 0.033 3.967 5 C -0.018 4.018 6 C -0.140 4.140 7 C -0.140 4.140 8 S 0.187 5.813 9 C -0.298 4.298 10 C 0.592 3.408 11 O -0.528 6.528 12 N -0.592 5.592 13 C 0.065 3.935 14 C 0.092 3.908 15 C 0.157 3.843 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.108 3.892 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.032 0.968 41 H 0.079 0.921 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 23.038 -2.816 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.009 3.991 3 N -0.192 5.192 4 C -0.241 4.241 5 C -0.040 4.040 6 C -0.198 4.198 7 C -0.199 4.199 8 S 0.448 5.552 9 C -0.422 4.422 10 C 0.379 3.621 11 O -0.407 6.407 12 N -0.323 5.323 13 C -0.080 4.080 14 C -0.011 4.011 15 C 0.031 3.969 16 N -0.332 5.332 17 C -0.351 4.351 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.019 4.019 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.138 0.862 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.482 22.547 -2.625 23.137 hybrid contribution -0.491 -0.986 -0.151 1.112 sum 3.992 21.560 -2.776 22.101 Atomic orbital electron populations 1.20685 0.86208 1.04647 1.03496 1.20606 0.98486 0.85090 0.94919 1.66038 1.04597 1.31502 1.17042 1.27876 0.94797 1.01030 1.00419 1.19866 0.95051 0.91296 0.97808 1.21797 1.03037 0.99188 0.95821 1.21803 1.03041 0.99208 0.95808 1.84427 1.05778 0.98896 1.66137 1.25534 0.95858 0.99338 1.21466 1.16805 0.85958 0.82325 0.77059 1.90750 1.14855 1.84455 1.50636 1.47894 1.07325 1.07054 1.70071 1.22016 0.81841 1.01869 1.02256 1.24169 1.00943 0.76557 0.99423 1.22691 0.94772 0.84866 0.94598 1.45694 1.78934 0.99959 1.08573 1.18991 1.39879 0.78800 0.97476 0.89977 1.24810 1.01416 0.98263 0.95806 1.69807 1.51139 1.33772 1.01961 0.86081 0.77745 0.84681 0.77010 1.21550 1.21540 1.20515 1.22982 0.97686 0.87569 0.93636 0.90446 0.87782 0.90994 0.89279 0.91643 0.92463 0.91427 0.91659 0.92517 0.91425 0.91498 0.88295 0.91561 0.86226 0.95000 0.90308 0.93490 0.93259 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.81 36.01 0.35 -0.82 16 2 C 0.15 2.06 6.79 -83.89 -0.57 1.49 16 3 N -0.48 -6.16 10.48 -7.70 -0.08 -6.24 16 4 C 0.03 0.36 5.90 -13.29 -0.08 0.28 16 5 C -0.02 -0.14 3.35 -91.77 -0.31 -0.45 16 6 C -0.14 -0.99 9.17 37.16 0.34 -0.65 16 7 C -0.14 -0.98 9.17 37.16 0.34 -0.64 16 8 S 0.19 2.02 18.10 -107.50 -1.95 0.07 16 9 C -0.30 -4.29 6.24 -37.10 -0.23 -4.53 16 10 C 0.59 10.05 7.62 -12.86 -0.10 9.95 16 11 O -0.53 -10.25 13.75 5.20 0.07 -10.18 16 12 N -0.59 -9.82 3.09 -177.28 -0.55 -10.37 16 13 C 0.07 0.86 7.66 59.85 0.46 1.32 16 14 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 15 C 0.16 3.61 6.93 -2.84 -0.02 3.59 16 16 N -0.61 -15.29 3.70 -177.87 -0.66 -15.95 16 17 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -26.86 11.39 55.49 0.63 -26.23 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 C 0.11 2.22 8.43 -2.96 -0.02 2.19 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.10 1.51 5.84 -51.93 -0.30 1.20 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 37 H 0.10 1.35 6.11 -51.93 -0.32 1.03 16 38 H 0.07 0.75 4.61 -23.72 -0.11 0.64 16 39 H 0.12 2.55 7.21 -51.93 -0.37 2.18 16 40 H 0.03 0.72 6.68 -51.93 -0.35 0.37 16 41 H 0.08 2.04 7.16 -51.93 -0.37 1.67 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.67 6.94 -51.93 -0.36 0.31 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -32.14 362.99 -8.85 -40.99 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.36 Total: -1.04 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.40 Total: 6.61 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.66 Total: -58.79 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.95 Total: 0.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.14 -8.85 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044287621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.116 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds