Wall clock time and date at job start Tue Mar 31 2020 15:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33635 * 122.74993 * 2 1 4 4 S 1.76196 * 107.92399 * 179.79782 * 3 2 1 5 5 C 1.70977 * 90.28309 * 0.28398 * 4 3 2 6 6 C 1.50700 * 124.91722 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46891 * 269.69343 * 6 5 4 8 8 C 1.50700 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00484 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64906 * 180.02562 * 10 8 7 12 12 C 1.54915 * 104.83334 * 204.09456 * 11 10 8 13 13 H 1.09001 * 111.00387 * 81.05917 * 12 11 10 14 14 C 1.52992 * 111.00370 * 204.91773 * 12 11 10 15 15 C 1.55165 * 101.57980 * 322.99105 * 12 11 10 16 16 H 1.08993 * 110.71917 * 277.13865 * 15 12 11 17 17 N 1.46496 * 110.71696 * 153.86336 * 15 12 11 18 18 C 1.36943 * 119.99804 * 160.02391 * 17 15 12 19 19 H 1.07998 * 119.99804 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99940 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47219 * 59.99520 * 22 20 18 24 24 H 1.48501 * 109.47157 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46975 * 299.99354 * 22 20 18 26 26 C 1.47022 * 125.64758 * 359.97438 * 10 8 7 27 27 N 1.29025 * 110.16682 * 359.71085 * 5 4 3 28 28 H 1.09001 * 109.47015 * 269.98086 * 1 2 3 29 29 H 1.08996 * 109.47093 * 29.98066 * 1 2 3 30 30 H 1.09001 * 109.46995 * 149.98020 * 1 2 3 31 31 H 1.08003 * 126.04088 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47258 * 149.69143 * 6 5 4 33 33 H 1.08999 * 109.47362 * 29.69064 * 6 5 4 34 34 H 1.09002 * 109.47333 * 59.99845 * 7 6 5 35 35 H 1.08999 * 109.46889 * 300.00010 * 7 6 5 36 36 H 1.08997 * 110.36855 * 322.93198 * 11 10 8 37 37 H 1.08999 * 110.36490 * 85.14513 * 11 10 8 38 38 H 1.09006 * 109.47371 * 172.19356 * 14 12 11 39 39 H 1.09002 * 109.47302 * 292.19133 * 14 12 11 40 40 H 1.08999 * 109.47292 * 52.19384 * 14 12 11 41 41 H 0.96996 * 120.00232 * 340.02486 * 17 15 12 42 42 H 0.97004 * 119.99895 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.88723 * 59.55959 * 26 10 8 44 44 H 1.09000 * 110.01436 * 298.46511 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6731 0.0059 5 6 3.5039 -0.9819 -0.0007 6 6 4.4835 -2.1272 -0.0004 7 6 4.8145 -2.5154 -1.4428 8 6 5.7945 -3.6602 -1.4426 9 8 6.1897 -4.1200 -0.3922 10 7 6.2319 -4.1731 -2.6096 11 6 7.1855 -5.2881 -2.7545 12 6 7.8183 -5.0894 -4.1545 13 1 8.6130 -4.3441 -4.1217 14 6 8.3356 -6.4153 -4.7157 15 6 6.6059 -4.5737 -4.9740 16 1 5.9913 -5.4055 -5.3182 17 7 7.0541 -3.7562 -6.1039 18 6 6.2201 -3.5444 -7.1693 19 1 5.2321 -3.9805 -7.1766 20 6 6.6450 -2.7701 -8.2401 21 7 7.8493 -2.2391 -8.2314 22 14 5.5071 -2.4807 -9.6930 23 1 4.2718 -1.8010 -9.2266 24 1 6.1926 -1.6270 -10.6963 25 1 5.1520 -3.7836 -10.3109 26 6 5.8363 -3.7141 -3.9491 27 7 2.2199 -1.1084 -0.0004 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.8392 2.1308 0.0004 32 1 4.0434 -2.9815 0.5140 33 1 5.3961 -1.8246 0.5130 34 1 5.2546 -1.6610 -1.9572 35 1 3.9019 -2.8180 -1.9562 36 1 7.9515 -5.2351 -1.9810 37 1 6.6626 -6.2432 -2.7048 38 1 8.6477 -6.2748 -5.7506 39 1 9.1852 -6.7541 -4.1228 40 1 7.5425 -7.1618 -4.6736 41 1 7.9416 -3.3648 -6.0975 42 1 8.1460 -1.6978 -8.9796 43 1 6.1000 -2.6639 -4.0741 44 1 4.7630 -3.8454 -4.0866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054908607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:11 Heat of formation + Delta-G solvation = 9.521751 kcal Electronic energy + Delta-G solvation = -24500.560579 eV Core-core repulsion = 20965.498750 eV Total energy + Delta-G solvation = -3535.061828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17597 -39.77440 -37.69702 -34.32999 -34.09097 -32.55395 -31.19986 -30.71500 -27.93043 -27.56468 -27.11547 -25.21431 -23.98429 -22.30685 -21.39947 -19.99191 -19.88070 -18.92288 -17.86374 -17.16404 -16.86368 -16.12960 -15.58202 -15.46161 -15.02073 -14.79615 -14.24517 -13.98437 -13.60722 -13.51382 -13.23167 -13.11918 -12.96263 -12.90160 -12.68531 -12.54400 -12.26916 -12.11841 -11.97753 -11.56649 -11.49776 -11.24850 -11.17182 -11.01587 -10.76422 -10.63972 -10.31230 -10.00602 -9.86359 -9.79308 -9.69603 -9.56595 -9.03588 -8.86775 -8.36057 -7.13539 -5.88627 -3.19722 0.50737 1.18733 1.57518 2.56668 2.78497 3.19181 3.37284 3.42634 3.43036 3.86231 4.47206 4.54969 4.82901 4.85421 4.93504 4.94860 5.03237 5.11655 5.17480 5.20418 5.32889 5.42968 5.45034 5.52921 5.59857 5.61356 5.73547 5.78636 5.81526 5.87410 5.90719 5.97820 6.05947 6.17435 6.23114 6.34966 6.45231 6.52777 6.59072 6.84111 7.57678 7.59256 7.76652 8.28162 8.31954 9.40867 9.94373 10.29320 11.33134 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.003197 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.433450 B = 8755.716166 C =10727.133499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.269 4.269 4 S 0.123 5.877 5 C 0.060 3.940 6 C -0.027 4.027 7 C -0.130 4.130 8 C 0.530 3.470 9 O -0.556 6.556 10 N -0.611 5.611 11 C 0.114 3.886 12 C -0.114 4.114 13 H 0.084 0.916 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.066 0.934 17 N -0.711 5.711 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.071 3.929 27 N -0.471 5.471 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.074 0.926 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 2.837 16.277 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.408 4.408 4 S 0.378 5.622 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.172 4.172 8 C 0.318 3.682 9 O -0.435 6.435 10 N -0.345 5.345 11 C -0.009 4.009 12 C -0.133 4.133 13 H 0.102 0.898 14 C -0.191 4.191 15 C 0.065 3.935 16 H 0.084 0.916 17 N -0.351 5.351 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.055 4.055 27 N -0.186 5.186 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.193 0.807 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.258 2.688 16.731 18.435 hybrid contribution -1.341 0.613 -0.985 1.773 sum -8.599 3.302 15.746 18.243 Atomic orbital electron populations 1.20360 0.87129 1.03458 1.02857 1.20334 0.98312 0.86528 1.01333 1.26809 0.95249 1.03959 1.14737 1.84100 1.07250 1.03072 1.67743 1.27058 0.94026 0.98333 1.02443 1.20003 0.95767 0.93945 0.97117 1.21589 1.00001 0.98063 0.97507 1.20087 0.81796 0.83803 0.82468 1.90671 1.59492 1.62633 1.30707 1.48538 1.44750 1.34844 1.06318 1.22265 0.91754 0.89355 0.97541 1.22624 0.98600 0.98660 0.93457 0.89805 1.21610 1.00303 0.95489 1.01729 1.21239 0.92648 0.92524 0.87100 0.91599 1.42346 1.17230 1.58977 1.16573 1.19193 0.96615 1.26399 0.95876 0.91031 1.24755 0.96739 1.00170 0.98681 1.69647 1.17675 1.37928 1.32384 0.86279 0.79818 0.77758 0.82369 1.21165 1.21634 1.21119 1.23373 0.99920 1.01157 0.81092 1.66142 1.04521 1.31605 1.16356 0.90712 0.90732 0.90470 0.80711 0.87929 0.88750 0.88512 0.88225 0.90936 0.91643 0.91321 0.93149 0.92833 0.77846 0.93267 0.90746 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.07 0.74 6.74 -84.23 -0.57 0.17 16 3 C -0.27 -2.61 11.13 29.12 0.32 -2.28 16 4 S 0.12 1.26 23.18 -107.50 -2.49 -1.24 16 5 C 0.06 0.71 6.64 -13.46 -0.09 0.63 16 6 C -0.03 -0.32 5.09 -27.88 -0.14 -0.46 16 7 C -0.13 -1.65 4.87 -27.88 -0.14 -1.78 16 8 C 0.53 8.16 7.85 -10.99 -0.09 8.08 16 9 O -0.56 -9.87 16.24 5.56 0.09 -9.78 16 10 N -0.61 -9.49 3.33 -170.52 -0.57 -10.06 16 11 C 0.11 1.66 6.37 -2.53 -0.02 1.64 16 12 C -0.11 -1.74 3.25 -88.47 -0.29 -2.03 16 13 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16 14 C -0.13 -1.83 9.31 37.15 0.35 -1.48 16 15 C 0.18 3.19 3.06 -66.09 -0.20 2.99 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 17 N -0.71 -16.28 5.18 -51.65 -0.27 -16.54 16 18 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 22 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.07 1.17 6.24 -3.06 -0.02 1.15 16 27 N -0.47 -6.14 10.53 -8.06 -0.08 -6.22 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.18 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 37 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.39 9.53 7.71 -40.82 -0.31 9.22 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -30.52 380.09 -9.65 -40.17 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.01 Total: 8.03 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.75 Total: -0.51 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.19 Total: -58.75 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.52 -9.65 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054908607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.687 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds