Wall clock time and date at job start Tue Mar 31 2020 13:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.87656 * 2 1 4 4 C 1.37950 * 120.21146 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.96198 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.12581 * 180.02562 * 5 4 3 7 7 O 1.21469 * 120.00426 * 179.97438 * 6 5 4 8 8 O 1.34710 * 119.99953 * 359.97438 * 6 5 4 9 9 C 1.39541 * 119.75431 * 359.70454 * 5 4 3 10 10 C 1.38483 * 119.78482 * 0.54333 * 9 5 4 11 11 O 1.35914 * 119.97979 * 179.74797 * 10 9 5 12 12 C 1.42901 * 117.00119 * 359.73006 * 11 10 9 13 13 C 1.52998 * 109.46850 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47509 * 304.99750 * 13 12 11 15 15 O 1.42899 * 109.47279 * 65.00078 * 13 12 11 16 16 C 1.53007 * 109.46962 * 185.00330 * 13 12 11 17 17 N 1.46898 * 109.47076 * 178.51087 * 16 13 12 18 18 C 1.46899 * 111.00113 * 164.01039 * 17 16 13 19 19 C 1.46903 * 110.99618 * 287.95862 * 17 16 13 20 20 C 1.50710 * 109.46694 * 170.00092 * 19 17 16 21 21 H 1.07997 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99503 * 179.97438 * 20 19 17 23 23 N 1.31510 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99743 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47095 * 90.00236 * 24 22 20 26 26 H 1.48503 * 109.47270 * 210.00405 * 24 22 20 27 27 H 1.48509 * 109.47232 * 330.00320 * 24 22 20 28 28 H 1.09007 * 109.46807 * 270.02410 * 1 2 3 29 29 H 1.08998 * 109.47180 * 30.01792 * 1 2 3 30 30 H 1.08995 * 109.47375 * 150.02884 * 1 2 3 31 31 H 1.07991 * 119.89616 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.02276 * 180.02562 * 4 3 2 33 33 H 0.96702 * 116.99998 * 179.97438 * 8 6 5 34 34 H 1.08002 * 120.11257 * 180.31475 * 9 5 4 35 35 H 1.09003 * 109.46944 * 59.99727 * 12 11 10 36 36 H 1.08997 * 109.47232 * 299.99776 * 12 11 10 37 37 H 0.96693 * 113.99957 * 59.99876 * 15 13 12 38 38 H 1.09002 * 109.46729 * 298.50330 * 16 13 12 39 39 H 1.08996 * 109.47226 * 58.50665 * 16 13 12 40 40 H 1.08997 * 109.47421 * 65.47889 * 18 17 16 41 41 H 1.08998 * 109.47418 * 185.48460 * 18 17 16 42 42 H 1.09003 * 109.46814 * 305.48009 * 18 17 16 43 43 H 1.08999 * 109.47541 * 290.00171 * 19 17 16 44 44 H 1.09000 * 109.47007 * 50.00691 * 19 17 16 45 45 H 0.97009 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5753 1.2072 0.0005 5 6 4.2798 0.0014 0.0005 6 6 5.7572 0.0058 0.0017 7 8 6.3678 -1.0443 0.0021 8 8 6.4273 1.1744 0.0022 9 6 3.5832 -1.2077 0.0062 10 6 2.1984 -1.2038 0.0005 11 8 1.5159 -2.3791 0.0008 12 6 2.2912 -3.5795 0.0013 13 6 1.3561 -4.7905 0.0023 14 1 0.6677 -4.7174 0.8443 15 8 0.6140 -4.8203 -1.2185 16 6 2.1819 -6.0724 0.1286 17 7 1.2820 -7.2329 0.1654 18 6 2.0175 -8.4778 -0.0941 19 6 0.5647 -7.3024 1.4455 20 6 -0.5181 -8.3470 1.3585 21 1 -0.6589 -8.9039 0.4439 22 6 -1.3281 -8.5925 2.4469 23 7 -1.1562 -7.9147 3.5607 24 14 -2.6698 -9.8878 2.3393 25 1 -2.1239 -11.2022 2.7628 26 1 -3.7959 -9.5092 3.2303 27 1 -3.1562 -9.9816 0.9393 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5133 31 1 1.6522 2.1322 -0.0004 32 1 4.1102 2.1454 0.0009 33 1 7.3931 1.1267 0.0033 34 1 4.1223 -2.1436 0.0114 35 1 2.9199 -3.6056 0.8914 36 1 2.9200 -3.6063 -0.8886 37 1 1.1636 -4.8849 -2.0114 38 1 2.8515 -6.1589 -0.7271 39 1 2.7682 -6.0379 1.0468 40 1 2.7222 -8.6594 0.7173 41 1 1.3147 -9.3085 -0.1577 42 1 2.5612 -8.3892 -1.0346 43 1 1.2629 -7.5680 2.2394 44 1 0.1174 -6.3328 1.6644 45 1 -1.7264 -8.0872 4.3264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600360773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:33 Heat of formation + Delta-G solvation = -150.688988 kcal Electronic energy + Delta-G solvation = -26946.882983 eV Core-core repulsion = 22929.828274 eV Total energy + Delta-G solvation = -4017.054710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94586 -39.99588 -38.27006 -37.08866 -36.43828 -35.37557 -33.25212 -32.49451 -30.85314 -29.98538 -27.92370 -27.38415 -26.54964 -24.05682 -23.51955 -22.64367 -21.85167 -21.03718 -20.12066 -18.81865 -18.00705 -16.86261 -16.59762 -16.26195 -16.24025 -15.93147 -15.71524 -15.45072 -14.87323 -14.67523 -14.51341 -14.20929 -13.67905 -13.62684 -13.60924 -13.19377 -13.12694 -12.53412 -12.48224 -12.27057 -11.96469 -11.86848 -11.78918 -11.56883 -11.48159 -11.21234 -11.11759 -10.96077 -10.91459 -10.68734 -10.67204 -10.36177 -9.78507 -9.71937 -9.25012 -9.16539 -8.42482 -8.41750 -7.26240 -6.01229 -4.01762 0.33113 1.08072 2.22127 2.61336 2.97410 3.33501 3.39715 3.42822 3.44866 4.40069 4.43686 4.51835 4.59414 4.67189 4.73322 4.80603 4.94611 5.03867 5.15177 5.23830 5.34811 5.40738 5.42222 5.43492 5.47312 5.56705 5.59529 5.89459 5.90693 5.94147 5.98266 6.05264 6.10308 6.17479 6.30213 6.34516 6.40890 6.69405 7.17117 7.26038 7.28943 7.52963 7.79097 8.02630 8.07504 8.17958 8.53456 9.05067 9.62060 11.09947 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.002512 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.959898 B =11142.979803 C =11986.028673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.100 4.100 4 C -0.097 4.097 5 C -0.100 4.100 6 C 0.528 3.472 7 O -0.512 6.512 8 O -0.512 6.512 9 C -0.145 4.145 10 C 0.124 3.876 11 O -0.291 6.291 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.115 0.885 15 O -0.532 6.532 16 C 0.028 3.972 17 N -0.530 5.530 18 C 0.040 3.960 19 C 0.190 3.810 20 C -0.504 4.504 21 H 0.063 0.937 22 C 0.054 3.946 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.414 0.586 34 H 0.143 0.857 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.363 0.637 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.043 0.957 43 H -0.010 1.010 44 H 0.032 0.968 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.058 20.329 -8.306 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.101 4.101 6 C 0.372 3.628 7 O -0.402 6.402 8 O -0.324 6.324 9 C -0.164 4.164 10 C 0.077 3.923 11 O -0.204 6.204 12 C -0.051 4.051 13 C 0.058 3.942 14 H 0.133 0.867 15 O -0.334 6.334 16 C -0.101 4.101 17 N -0.254 5.254 18 C -0.108 4.108 19 C 0.065 3.935 20 C -0.543 4.543 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.540 5.540 24 Si 0.726 3.274 25 H -0.208 1.208 26 H -0.212 1.212 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.273 0.727 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.208 0.792 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.050 0.950 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.645 20.120 -8.079 24.154 hybrid contribution 1.483 -0.927 0.501 1.819 sum 12.128 19.193 -7.578 23.935 Atomic orbital electron populations 1.20759 0.89648 1.03570 1.03130 1.19659 0.97310 0.90199 1.00487 1.20894 0.93634 0.97241 1.00038 1.21301 0.94204 0.97272 0.98795 1.18700 0.88666 0.94433 1.08345 1.20913 0.88882 0.80945 0.72036 1.90903 1.70045 1.33147 1.46059 1.84549 1.26924 1.35027 1.85860 1.21335 0.93043 0.98624 1.03406 1.18726 0.89606 0.86835 0.97087 1.86222 1.34793 1.11557 1.87803 1.23805 0.95370 0.83958 1.01977 1.21949 0.93507 0.88977 0.89752 0.86688 1.86731 1.36031 1.96244 1.14435 1.22568 0.94602 0.92689 1.00245 1.62019 1.25244 1.00278 1.37884 1.22201 0.96974 0.93878 0.97778 1.19821 0.92724 0.97994 0.82923 1.21134 1.15124 1.19596 0.98418 0.91842 1.24987 0.97719 0.96652 0.95323 1.69954 1.39755 1.41300 1.02950 0.86494 0.81413 0.81449 0.78053 1.20814 1.21250 1.19721 0.90533 0.91311 0.90081 0.84399 0.84384 0.72698 0.83930 0.91035 0.91693 0.79189 0.91706 0.94688 0.97008 0.90613 0.93772 0.99242 0.94960 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.78 36.01 0.35 -0.74 16 2 C -0.08 -0.81 5.90 -104.39 -0.62 -1.42 16 3 C -0.10 -0.85 9.67 -39.67 -0.38 -1.23 16 4 C -0.10 -0.85 9.61 -39.16 -0.38 -1.23 16 5 C -0.10 -1.08 5.87 -105.00 -0.62 -1.70 16 6 C 0.53 5.59 8.27 34.61 0.29 5.88 16 7 O -0.51 -6.93 17.13 -19.24 -0.33 -7.26 16 8 O -0.51 -3.61 12.68 -40.52 -0.51 -4.12 16 9 C -0.15 -1.73 8.58 -39.01 -0.33 -2.06 16 10 C 0.12 1.54 6.65 -39.28 -0.26 1.27 16 11 O -0.29 -4.09 9.13 -24.33 -0.22 -4.32 16 12 C 0.02 0.32 4.37 37.16 0.16 0.49 16 13 C 0.12 1.93 3.27 -26.73 -0.09 1.84 16 14 H 0.12 2.25 6.55 -51.93 -0.34 1.91 16 15 O -0.53 -9.01 13.20 -40.09 -0.53 -9.54 16 16 C 0.03 0.48 4.63 -3.82 -0.02 0.46 16 17 N -0.53 -11.31 4.60 -244.36 -1.12 -12.44 16 18 C 0.04 0.77 9.32 60.06 0.56 1.33 16 19 C 0.19 4.96 4.57 -4.97 -0.02 4.93 16 20 C -0.50 -14.31 8.54 -34.43 -0.29 -14.61 16 21 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.08 0.91 7.52 -51.93 -0.39 0.52 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.92 7.61 -52.49 -0.40 0.52 16 33 H 0.41 1.09 9.11 45.56 0.42 1.50 16 34 H 0.14 1.70 5.88 -52.49 -0.31 1.39 16 35 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 36 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 37 H 0.36 4.57 9.04 45.56 0.41 4.98 16 38 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 39 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 40 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 41 H 0.08 1.55 6.90 -51.93 -0.36 1.20 16 42 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 43 H -0.01 -0.28 8.11 -51.93 -0.42 -0.70 16 44 H 0.03 0.90 6.38 -51.93 -0.33 0.56 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -35.02 379.53 -7.98 -43.00 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.95 Total: 3.58 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.75 Total: -5.33 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.39 Total: -38.62 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -1.59 Total: -25.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.02 -7.98 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600360773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.686 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds