Wall clock time and date at job start Tue Mar 31 2020 13:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.87656 * 2 1 4 4 C 1.37950 * 120.21146 * 179.97438 * 3 2 1 5 5 C 1.39651 * 119.96198 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.12581 * 180.02562 * 5 4 3 7 7 O 1.21469 * 120.00426 * 179.97438 * 6 5 4 8 8 O 1.34710 * 119.99953 * 359.97438 * 6 5 4 9 9 C 1.39541 * 119.75431 * 359.70454 * 5 4 3 10 10 C 1.38483 * 119.78482 * 0.54333 * 9 5 4 11 11 O 1.35914 * 119.97979 * 179.74797 * 10 9 5 12 12 C 1.42901 * 117.00119 * 359.73006 * 11 10 9 13 13 C 1.52998 * 109.46850 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47509 * 304.99750 * 13 12 11 15 15 O 1.42899 * 109.47279 * 65.00078 * 13 12 11 16 16 C 1.53007 * 109.46962 * 185.00330 * 13 12 11 17 17 N 1.46898 * 109.47076 * 178.51087 * 16 13 12 18 18 C 1.46899 * 111.00113 * 164.01039 * 17 16 13 19 19 C 1.46903 * 110.99618 * 287.95862 * 17 16 13 20 20 C 1.50710 * 109.46694 * 170.00092 * 19 17 16 21 21 H 1.07997 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99503 * 179.97438 * 20 19 17 23 23 N 1.31510 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99743 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47095 * 90.00236 * 24 22 20 26 26 H 1.48503 * 109.47270 * 210.00405 * 24 22 20 27 27 H 1.48509 * 109.47232 * 330.00320 * 24 22 20 28 28 H 1.09007 * 109.46807 * 270.02410 * 1 2 3 29 29 H 1.08998 * 109.47180 * 30.01792 * 1 2 3 30 30 H 1.08995 * 109.47375 * 150.02884 * 1 2 3 31 31 H 1.07991 * 119.89616 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.02276 * 180.02562 * 4 3 2 33 33 H 0.96702 * 116.99998 * 179.97438 * 8 6 5 34 34 H 1.08002 * 120.11257 * 180.31475 * 9 5 4 35 35 H 1.09003 * 109.46944 * 59.99727 * 12 11 10 36 36 H 1.08997 * 109.47232 * 299.99776 * 12 11 10 37 37 H 0.96693 * 113.99957 * 59.99876 * 15 13 12 38 38 H 1.09002 * 109.46729 * 298.50330 * 16 13 12 39 39 H 1.08996 * 109.47226 * 58.50665 * 16 13 12 40 40 H 1.08997 * 109.47421 * 65.47889 * 18 17 16 41 41 H 1.08998 * 109.47418 * 185.48460 * 18 17 16 42 42 H 1.09003 * 109.46814 * 305.48009 * 18 17 16 43 43 H 1.08999 * 109.47541 * 290.00171 * 19 17 16 44 44 H 1.09000 * 109.47007 * 50.00691 * 19 17 16 45 45 H 0.97009 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5753 1.2072 0.0005 5 6 4.2798 0.0014 0.0005 6 6 5.7572 0.0058 0.0017 7 8 6.3678 -1.0443 0.0021 8 8 6.4273 1.1744 0.0022 9 6 3.5832 -1.2077 0.0062 10 6 2.1984 -1.2038 0.0005 11 8 1.5159 -2.3791 0.0008 12 6 2.2912 -3.5795 0.0013 13 6 1.3561 -4.7905 0.0023 14 1 0.6677 -4.7174 0.8443 15 8 0.6140 -4.8203 -1.2185 16 6 2.1819 -6.0724 0.1286 17 7 1.2820 -7.2329 0.1654 18 6 2.0175 -8.4778 -0.0941 19 6 0.5647 -7.3024 1.4455 20 6 -0.5181 -8.3470 1.3585 21 1 -0.6589 -8.9039 0.4439 22 6 -1.3281 -8.5925 2.4469 23 7 -1.1562 -7.9147 3.5607 24 14 -2.6698 -9.8878 2.3393 25 1 -2.1239 -11.2022 2.7628 26 1 -3.7959 -9.5092 3.2303 27 1 -3.1562 -9.9816 0.9393 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5133 31 1 1.6522 2.1322 -0.0004 32 1 4.1102 2.1454 0.0009 33 1 7.3931 1.1267 0.0033 34 1 4.1223 -2.1436 0.0114 35 1 2.9199 -3.6056 0.8914 36 1 2.9200 -3.6063 -0.8886 37 1 1.1636 -4.8849 -2.0114 38 1 2.8515 -6.1589 -0.7271 39 1 2.7682 -6.0379 1.0468 40 1 2.7222 -8.6594 0.7173 41 1 1.3147 -9.3085 -0.1577 42 1 2.5612 -8.3892 -1.0346 43 1 1.2629 -7.5680 2.2394 44 1 0.1174 -6.3328 1.6644 45 1 -1.7264 -8.0872 4.3264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600360773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:32 Heat of formation + Delta-G solvation = -177.786732 kcal Electronic energy + Delta-G solvation = -26948.058030 eV Core-core repulsion = 22929.828274 eV Total energy + Delta-G solvation = -4018.229756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76681 -40.86131 -39.48122 -38.24756 -37.16057 -36.89327 -34.62484 -34.04159 -31.97592 -30.99709 -29.40439 -28.69549 -27.85870 -25.70286 -24.51881 -23.78101 -22.87669 -22.07455 -21.62764 -19.67050 -18.78641 -18.63575 -17.88599 -17.57053 -17.09285 -16.82368 -16.68953 -16.62851 -16.37660 -16.02818 -15.89755 -15.41181 -15.02757 -14.87753 -14.38860 -14.36677 -14.25470 -13.96087 -13.86873 -13.21914 -13.15722 -13.05686 -12.92954 -12.67683 -12.63674 -12.60394 -12.58852 -12.39016 -12.30518 -12.13597 -12.05656 -11.74694 -11.53618 -11.33367 -10.95143 -10.61327 -10.01207 -9.28062 -9.00773 -8.21198 -6.30526 -0.46202 0.30560 1.39562 1.41694 1.43140 1.53371 1.89630 2.03933 2.40155 2.65068 3.11236 3.23174 3.50127 3.66256 3.74544 3.82715 3.91471 3.94041 4.08271 4.09523 4.22189 4.27527 4.32934 4.48972 4.54508 4.60364 4.69086 4.73958 4.74603 4.81806 4.96974 5.07210 5.14313 5.16906 5.17265 5.25896 5.28784 5.40072 5.49966 5.63660 5.66907 6.04357 6.26843 6.30452 6.59786 6.84814 6.89813 6.96258 7.38702 8.90176 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.002512 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.959898 B =11142.979803 C =11986.028673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.084 4.084 5 C -0.116 4.116 6 C 0.534 3.466 7 O -0.550 6.550 8 O -0.498 6.498 9 C -0.157 4.157 10 C 0.099 3.901 11 O -0.313 6.313 12 C 0.037 3.963 13 C 0.126 3.874 14 H 0.071 0.929 15 O -0.553 6.553 16 C 0.029 3.971 17 N -0.542 5.542 18 C 0.041 3.959 19 C 0.206 3.794 20 C -0.522 4.522 21 H 0.062 0.938 22 C -0.001 4.001 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.266 1.266 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.434 0.566 34 H 0.135 0.865 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.382 0.618 38 H 0.105 0.895 39 H 0.034 0.966 40 H 0.010 0.990 41 H 0.056 0.944 42 H 0.085 0.915 43 H -0.039 1.039 44 H 0.005 0.995 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.718 21.967 -9.696 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.102 4.102 5 C -0.118 4.118 6 C 0.380 3.620 7 O -0.443 6.443 8 O -0.312 6.312 9 C -0.176 4.176 10 C 0.053 3.947 11 O -0.227 6.227 12 C -0.039 4.039 13 C 0.066 3.934 14 H 0.089 0.911 15 O -0.359 6.359 16 C -0.099 4.099 17 N -0.266 5.266 18 C -0.107 4.107 19 C 0.080 3.920 20 C -0.561 4.561 21 H 0.080 0.920 22 C -0.198 4.198 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.190 1.190 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.192 0.808 32 H 0.184 0.816 33 H 0.297 0.703 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.123 0.877 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.103 0.897 43 H -0.021 1.021 44 H 0.023 0.977 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.349 21.787 -9.495 26.337 hybrid contribution 1.349 -1.280 0.894 2.063 sum 12.697 20.507 -8.602 25.608 Atomic orbital electron populations 1.20759 0.89239 1.03777 1.03131 1.19973 0.97876 0.90417 1.00344 1.21290 0.93683 0.97658 0.98173 1.21644 0.94420 0.97477 0.96652 1.18879 0.89099 0.94824 1.08952 1.20886 0.88904 0.81108 0.71104 1.90890 1.70735 1.34588 1.48047 1.84493 1.28741 1.33015 1.84936 1.21321 0.92899 0.99101 1.04243 1.18974 0.90034 0.86711 0.98956 1.86165 1.35682 1.12303 1.88565 1.23578 0.94311 0.82716 1.03309 1.21654 0.92899 0.90481 0.88359 0.91131 1.86673 1.37402 1.96407 1.15393 1.22672 0.94341 0.91075 1.01859 1.61900 1.27238 1.02673 1.34742 1.22230 0.96468 0.92276 0.99701 1.19434 0.92191 0.95870 0.84496 1.21469 1.15949 1.20152 0.98481 0.91998 1.25929 1.00188 0.98873 0.94859 1.70085 1.40913 1.42888 1.03722 0.85383 0.78208 0.78750 0.78295 1.19611 1.20723 1.19021 0.90632 0.88492 0.92444 0.80813 0.81648 0.70321 0.84718 0.90763 0.89195 0.76919 0.87693 0.94820 0.97186 0.92481 0.89677 1.02145 0.97694 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.78 71.24 0.70 -1.38 16 2 C -0.09 -1.72 5.90 -19.71 -0.12 -1.84 16 3 C -0.09 -1.26 9.67 22.21 0.21 -1.05 16 4 C -0.08 -1.22 9.61 22.54 0.22 -1.00 16 5 C -0.12 -2.35 5.87 -20.11 -0.12 -2.46 16 6 C 0.53 10.59 8.27 70.33 0.58 11.17 16 7 O -0.55 -14.69 17.13 19.94 0.34 -14.34 16 8 O -0.50 -5.73 12.68 -56.20 -0.71 -6.44 16 9 C -0.16 -3.71 8.58 22.64 0.19 -3.52 16 10 C 0.10 2.46 6.65 22.47 0.15 2.61 16 11 O -0.31 -9.17 9.13 -87.94 -0.80 -9.97 16 12 C 0.04 0.98 4.37 71.98 0.31 1.29 16 13 C 0.13 4.27 3.27 30.60 0.10 4.37 16 14 H 0.07 3.01 6.55 -2.39 -0.02 3.00 16 15 O -0.55 -18.99 13.20 -144.34 -1.90 -20.90 16 16 C 0.03 0.98 4.63 86.31 0.40 1.38 16 17 N -0.54 -23.46 4.60 -927.02 -4.27 -27.72 16 18 C 0.04 1.56 9.32 127.69 1.19 2.75 16 19 C 0.21 11.27 4.57 85.56 0.39 11.67 16 20 C -0.52 -30.51 8.54 25.60 0.22 -30.29 16 21 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 22 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 23 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 24 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 29 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.06 1.33 7.52 -2.39 -0.02 1.31 16 31 H 0.17 1.16 8.06 -2.92 -0.02 1.14 16 32 H 0.17 1.49 7.61 -2.91 -0.02 1.47 16 33 H 0.43 1.17 9.11 -74.06 -0.67 0.49 16 34 H 0.14 3.29 5.88 -2.91 -0.02 3.27 16 35 H 0.07 1.90 7.65 -2.39 -0.02 1.88 16 36 H 0.09 1.92 7.67 -2.39 -0.02 1.90 16 37 H 0.38 9.29 9.04 -74.06 -0.67 8.62 16 38 H 0.10 2.70 7.88 -2.39 -0.02 2.68 16 39 H 0.03 1.16 8.05 -2.39 -0.02 1.14 16 40 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 41 H 0.06 2.34 6.90 -2.39 -0.02 2.32 16 42 H 0.08 2.50 7.97 -2.39 -0.02 2.48 16 43 H -0.04 -2.30 8.11 -2.39 -0.02 -2.32 16 44 H 0.01 0.30 6.38 -2.39 -0.02 0.28 16 45 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -79.14 379.53 -0.45 -79.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.31 Total: 15.56 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.90 Total: -5.88 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.98 Total: -85.10 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -3.08 Total: -51.65 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.14 -0.45 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600360773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.194 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds