Wall clock time and date at job start Tue Mar 31 2020 15:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47243 * 2 1 4 4 N 1.29422 * 124.80608 * 89.97367 * 3 2 1 5 5 C 1.30943 * 117.36836 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.18595 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.12722 * 180.02562 * 6 5 4 8 8 O 1.21684 * 119.99749 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99761 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47020 * 34.99451 * 10 9 7 12 12 C 1.53005 * 109.46632 * 274.99522 * 10 9 7 13 13 C 1.52997 * 109.47452 * 299.99871 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.36931 * 119.99971 * 274.99678 * 17 15 14 19 19 H 1.08005 * 120.00425 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00390 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99556 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00553 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47166 * 89.99808 * 22 20 18 24 24 H 1.48501 * 109.47423 * 210.00188 * 22 20 18 25 25 H 1.48508 * 109.46891 * 329.99990 * 22 20 18 26 26 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 27 27 S 1.70955 * 124.80261 * 270.29385 * 3 2 1 28 28 H 1.09000 * 109.47567 * 60.00371 * 1 2 3 29 29 H 1.09005 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47521 * 299.99681 * 1 2 3 31 31 H 1.09000 * 109.47341 * 239.99796 * 2 1 3 32 32 H 1.09002 * 109.47522 * 120.00407 * 2 1 3 33 33 H 1.07994 * 122.90554 * 180.02562 * 5 4 3 34 34 H 0.97008 * 120.00272 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46935 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.46812 * 60.00088 * 12 10 9 37 37 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 39 39 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 40 40 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 41 41 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 42 42 H 0.96997 * 119.99679 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.47853 * 180.02562 * 26 15 14 44 44 H 1.09002 * 109.47153 * 300.00319 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3418 0.8932 6 6 2.8404 3.7105 -0.4060 7 6 3.3017 5.0151 -0.8927 8 8 3.6095 5.8859 -0.1004 9 7 3.3835 5.2496 -2.2173 10 6 3.8448 6.5524 -2.7035 11 1 4.6086 6.9417 -2.0304 12 6 2.6647 7.5251 -2.7530 13 6 1.5925 6.9786 -3.6977 14 6 2.1819 6.8200 -5.1007 15 6 3.3618 5.8472 -5.0512 16 1 3.0187 4.8779 -4.6896 17 7 3.9258 5.6949 -6.3947 18 6 3.3841 4.7878 -7.2658 19 1 2.5413 4.1843 -6.9624 20 6 3.9187 4.6430 -8.5387 21 7 4.9460 5.3781 -8.9084 22 14 3.1793 3.4061 -9.7273 23 1 2.1090 4.0614 -10.5213 24 1 4.2369 2.9044 -10.6411 25 1 2.6042 2.2693 -8.9643 26 6 4.4341 6.3937 -4.1065 27 16 2.3508 2.3432 -1.4037 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.9435 4.0009 1.7163 34 1 3.1378 4.5555 -2.8489 35 1 3.0079 8.4945 -3.1143 36 1 2.2449 7.6381 -1.7534 37 1 0.7518 7.6713 -3.7326 38 1 1.2495 6.0093 -3.3360 39 1 2.5250 7.7892 -5.4623 40 1 1.4181 6.4302 -5.7737 41 1 4.6829 6.2366 -6.6673 42 1 5.3198 5.2767 -9.7977 43 1 5.2749 5.7010 -4.0715 44 1 4.7772 7.3630 -4.4682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981545708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:30 Heat of formation + Delta-G solvation = -1.538420 kcal Electronic energy + Delta-G solvation = -25041.052978 eV Core-core repulsion = 21505.511545 eV Total energy + Delta-G solvation = -3535.541433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46997 -39.68391 -37.88978 -34.54962 -34.35103 -33.14196 -31.21599 -30.56551 -29.22619 -27.90367 -26.30612 -23.84585 -23.38615 -22.51664 -21.92620 -21.05154 -19.80655 -19.06511 -18.44269 -17.36590 -16.86358 -15.94444 -15.63870 -15.24126 -14.99057 -14.74231 -14.55276 -14.42923 -14.16511 -13.74073 -13.70781 -13.49999 -13.09255 -12.70727 -12.47970 -12.13066 -12.12487 -11.97958 -11.82110 -11.69143 -11.56888 -11.04540 -10.91823 -10.82903 -10.43993 -10.28065 -10.23863 -10.21768 -9.89331 -9.80012 -9.73973 -9.57333 -9.20001 -9.00661 -8.89483 -7.01737 -5.81774 -3.10955 0.01686 0.92472 1.34975 2.25798 3.07369 3.09168 3.39174 3.44200 3.46193 3.74242 4.51800 4.52290 4.67058 4.78029 4.80003 4.97970 5.04588 5.08586 5.12911 5.22053 5.41946 5.44387 5.52089 5.53299 5.64064 5.70460 5.75267 5.81815 5.86592 5.92588 6.01046 6.05089 6.17898 6.24489 6.44028 6.50955 6.56355 6.66599 6.88674 7.03208 7.31734 7.45121 7.64030 8.06957 8.36470 9.47851 10.04818 10.39485 11.40768 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003682 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.471258 B = 7603.321507 C = 9403.607638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.058 3.942 4 N -0.480 5.480 5 C 0.117 3.883 6 C -0.293 4.293 7 C 0.596 3.404 8 O -0.532 6.532 9 N -0.710 5.710 10 C 0.152 3.848 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.137 4.137 15 C 0.180 3.820 16 H 0.039 0.961 17 N -0.724 5.724 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.135 4.135 27 S 0.178 5.822 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -6.187 17.848 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.217 4.217 4 N -0.194 5.194 5 C -0.040 4.040 6 C -0.417 4.417 7 C 0.381 3.619 8 O -0.411 6.411 9 N -0.362 5.362 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.177 4.177 15 C 0.070 3.930 16 H 0.057 0.943 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.173 4.173 27 S 0.435 5.565 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.204 0.796 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.953 -6.172 17.676 19.972 hybrid contribution -0.067 -0.176 -0.471 0.507 sum -7.019 -6.348 17.205 19.636 Atomic orbital electron populations 1.21790 0.93099 1.02891 1.02902 1.20325 0.97017 0.87159 1.04753 1.27555 1.00891 1.02011 0.91254 1.66216 1.15762 1.06137 1.31247 1.22160 0.95122 0.91265 0.95482 1.25860 1.17242 1.00692 0.97931 1.16709 0.77627 0.84770 0.82835 1.90818 1.49917 1.45035 1.55292 1.46143 1.67079 1.17072 1.05909 1.21040 0.96281 0.82123 0.95812 0.89415 1.21908 0.96290 0.98645 0.99792 1.21513 0.97406 1.00352 0.96168 1.22291 0.99766 1.01009 0.94663 1.20140 0.91198 0.95199 0.86440 0.94303 1.42409 1.38002 1.46607 1.09410 1.19212 1.11217 1.13254 0.93471 0.91232 1.24734 0.98366 0.99989 0.97701 1.69658 1.25679 1.42800 1.19842 0.86228 0.78068 0.80876 0.81232 1.21721 1.21775 1.20753 1.22148 0.99431 1.02935 0.92835 1.84220 1.57354 1.04035 1.10879 0.92115 0.91087 0.91853 0.89155 0.88417 0.79575 0.76255 0.90862 0.91975 0.92688 0.92797 0.92413 0.91999 0.78203 0.93478 0.91120 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.15 0.37 -0.53 16 2 C -0.05 -0.35 6.51 -27.89 -0.18 -0.53 16 3 C 0.06 0.57 6.64 -13.29 -0.09 0.48 16 4 N -0.48 -5.60 10.51 -11.50 -0.12 -5.72 16 5 C 0.12 1.41 11.09 -18.85 -0.21 1.20 16 6 C -0.29 -3.66 6.48 -37.09 -0.24 -3.90 16 7 C 0.60 8.49 7.75 -12.85 -0.10 8.39 16 8 O -0.53 -8.89 16.53 5.20 0.09 -8.80 16 9 N -0.71 -9.61 4.23 -55.11 -0.23 -9.84 16 10 C 0.15 2.09 2.78 -67.93 -0.19 1.90 16 11 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.13 -1.69 5.60 -26.73 -0.15 -1.84 16 13 C -0.12 -1.60 5.77 -26.73 -0.15 -1.76 16 14 C -0.14 -2.30 5.50 -26.73 -0.15 -2.45 16 15 C 0.18 3.29 2.60 -67.93 -0.18 3.11 16 16 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 17 N -0.72 -17.13 5.12 -53.43 -0.27 -17.40 16 18 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 22 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.13 -2.08 5.08 -26.73 -0.14 -2.21 16 27 S 0.18 1.84 22.31 -107.50 -2.40 -0.56 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.19 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.40 5.28 6.05 -40.82 -0.25 5.03 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.74 7.60 -51.93 -0.39 0.34 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -31.06 371.13 -10.02 -41.08 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.73 Total: 10.69 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.65 Total: -5.06 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.10 Total: -59.63 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.06 -10.02 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981545708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.543 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds