Wall clock time and date at job start Tue Mar 31 2020 15:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47243 * 2 1 4 4 N 1.29422 * 124.80608 * 89.97367 * 3 2 1 5 5 C 1.30943 * 117.36836 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.18595 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.12722 * 180.02562 * 6 5 4 8 8 O 1.21684 * 119.99749 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99761 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47020 * 34.99451 * 10 9 7 12 12 C 1.53005 * 109.46632 * 274.99522 * 10 9 7 13 13 C 1.52997 * 109.47452 * 299.99871 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.36931 * 119.99971 * 274.99678 * 17 15 14 19 19 H 1.08005 * 120.00425 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00390 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99556 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00553 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47166 * 89.99808 * 22 20 18 24 24 H 1.48501 * 109.47423 * 210.00188 * 22 20 18 25 25 H 1.48508 * 109.46891 * 329.99990 * 22 20 18 26 26 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 27 27 S 1.70955 * 124.80261 * 270.29385 * 3 2 1 28 28 H 1.09000 * 109.47567 * 60.00371 * 1 2 3 29 29 H 1.09005 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47521 * 299.99681 * 1 2 3 31 31 H 1.09000 * 109.47341 * 239.99796 * 2 1 3 32 32 H 1.09002 * 109.47522 * 120.00407 * 2 1 3 33 33 H 1.07994 * 122.90554 * 180.02562 * 5 4 3 34 34 H 0.97008 * 120.00272 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46935 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.46812 * 60.00088 * 12 10 9 37 37 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 39 39 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 40 40 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 41 41 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 42 42 H 0.96997 * 119.99679 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.47853 * 180.02562 * 26 15 14 44 44 H 1.09002 * 109.47153 * 300.00319 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3418 0.8932 6 6 2.8404 3.7105 -0.4060 7 6 3.3017 5.0151 -0.8927 8 8 3.6095 5.8859 -0.1004 9 7 3.3835 5.2496 -2.2173 10 6 3.8448 6.5524 -2.7035 11 1 4.6086 6.9417 -2.0304 12 6 2.6647 7.5251 -2.7530 13 6 1.5925 6.9786 -3.6977 14 6 2.1819 6.8200 -5.1007 15 6 3.3618 5.8472 -5.0512 16 1 3.0187 4.8779 -4.6896 17 7 3.9258 5.6949 -6.3947 18 6 3.3841 4.7878 -7.2658 19 1 2.5413 4.1843 -6.9624 20 6 3.9187 4.6430 -8.5387 21 7 4.9460 5.3781 -8.9084 22 14 3.1793 3.4061 -9.7273 23 1 2.1090 4.0614 -10.5213 24 1 4.2369 2.9044 -10.6411 25 1 2.6042 2.2693 -8.9643 26 6 4.4341 6.3937 -4.1065 27 16 2.3508 2.3432 -1.4037 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.9435 4.0009 1.7163 34 1 3.1378 4.5555 -2.8489 35 1 3.0079 8.4945 -3.1143 36 1 2.2449 7.6381 -1.7534 37 1 0.7518 7.6713 -3.7326 38 1 1.2495 6.0093 -3.3360 39 1 2.5250 7.7892 -5.4623 40 1 1.4181 6.4302 -5.7737 41 1 4.6829 6.2366 -6.6673 42 1 5.3198 5.2767 -9.7977 43 1 5.2749 5.7010 -4.0715 44 1 4.7772 7.3630 -4.4682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981545708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:30 Heat of formation + Delta-G solvation = -20.843424 kcal Electronic energy + Delta-G solvation = -25041.890106 eV Core-core repulsion = 21505.511545 eV Total energy + Delta-G solvation = -3536.378561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52385 -40.68421 -39.15260 -36.17440 -34.99485 -34.52153 -32.94709 -31.61558 -30.34493 -29.46232 -27.08635 -25.68829 -24.26504 -23.50077 -23.07354 -22.45773 -20.79807 -20.28145 -19.37430 -19.14342 -17.97517 -17.11749 -16.80733 -16.52398 -16.12377 -15.93698 -15.64087 -15.49141 -15.16833 -15.04692 -14.91678 -14.74986 -14.48588 -13.92510 -13.56566 -13.25905 -13.17540 -13.06686 -12.89784 -12.77619 -12.67397 -12.57365 -12.23834 -12.07776 -12.05560 -11.95763 -11.62462 -11.48969 -11.34475 -11.03064 -10.84355 -10.79083 -10.64064 -10.18052 -9.96273 -8.97768 -7.91204 -5.19223 -0.86183 0.08209 0.49275 1.32800 1.49672 1.50560 1.58605 1.99731 2.05878 2.58296 3.00287 3.42416 3.57476 3.74872 3.84700 3.86442 3.89792 4.15304 4.25028 4.27471 4.28224 4.29871 4.33330 4.53499 4.63983 4.66820 4.69502 4.79209 4.90127 4.95708 4.99161 5.07047 5.07433 5.15721 5.20845 5.32334 5.34302 5.40132 5.50201 5.55303 5.63911 6.28817 6.31275 6.51581 6.96922 7.37405 8.13248 8.35999 9.32309 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003682 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.471258 B = 7603.321507 C = 9403.607638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C 0.068 3.932 4 N -0.499 5.499 5 C 0.120 3.880 6 C -0.319 4.319 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.707 5.707 10 C 0.158 3.842 11 H 0.089 0.911 12 C -0.122 4.122 13 C -0.106 4.106 14 C -0.128 4.128 15 C 0.177 3.823 16 H 0.042 0.958 17 N -0.736 5.736 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.266 1.266 26 C -0.123 4.123 27 S 0.197 5.803 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.191 0.809 34 H 0.403 0.597 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -7.511 18.757 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.207 4.207 4 N -0.214 5.214 5 C -0.038 4.038 6 C -0.443 4.443 7 C 0.385 3.615 8 O -0.442 6.442 9 N -0.359 5.359 10 C 0.053 3.947 11 H 0.107 0.893 12 C -0.161 4.161 13 C -0.144 4.144 14 C -0.168 4.168 15 C 0.068 3.932 16 H 0.060 0.940 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.191 1.191 26 C -0.162 4.162 27 S 0.454 5.546 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.208 0.792 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.366 -7.511 18.615 21.747 hybrid contribution 0.318 0.179 -0.666 0.760 sum -8.047 -7.332 17.948 20.992 Atomic orbital electron populations 1.21791 0.92332 1.04069 1.02262 1.20569 0.97521 0.85262 1.06184 1.28196 0.98881 1.02922 0.90659 1.66290 1.16937 1.06179 1.31961 1.22310 0.94375 0.91551 0.95584 1.25694 1.19117 1.00871 0.98620 1.16865 0.76964 0.85099 0.82569 1.90795 1.51360 1.46190 1.55872 1.46096 1.66878 1.16995 1.05890 1.20956 0.96678 0.82540 0.94484 0.89291 1.21870 0.95629 0.98869 0.99690 1.21422 0.97883 1.01087 0.94039 1.22111 0.98474 0.99892 0.96298 1.20358 0.92346 0.95962 0.84498 0.94044 1.42616 1.37825 1.46007 1.11108 1.19602 1.10541 1.12750 0.93743 0.90488 1.25487 0.99300 1.02299 0.99603 1.69812 1.27501 1.44911 1.19874 0.85243 0.76922 0.79194 0.79067 1.21790 1.22598 1.19084 1.21994 0.98292 1.02715 0.93161 1.84114 1.56956 1.03001 1.10500 0.92349 0.89046 0.92893 0.87186 0.87499 0.79248 0.76021 0.89741 0.91776 0.91112 0.92485 0.93024 0.93881 0.79576 0.94210 0.91880 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.05 -0.60 6.51 29.85 0.19 -0.41 16 3 C 0.07 1.22 6.64 88.46 0.59 1.81 16 4 N -0.50 -11.05 10.51 -190.30 -2.00 -13.05 16 5 C 0.12 2.81 11.09 84.23 0.93 3.74 16 6 C -0.32 -7.69 6.48 23.88 0.15 -7.53 16 7 C 0.60 16.62 7.75 86.45 0.67 17.29 16 8 O -0.56 -18.50 16.53 -4.30 -0.07 -18.57 16 9 N -0.71 -18.38 4.23 -446.49 -1.89 -20.27 16 10 C 0.16 4.16 2.78 44.99 0.13 4.28 16 11 H 0.09 2.40 7.58 -2.39 -0.02 2.38 16 12 C -0.12 -2.99 5.60 30.60 0.17 -2.82 16 13 C -0.11 -2.72 5.77 30.59 0.18 -2.54 16 14 C -0.13 -4.16 5.50 30.60 0.17 -3.99 16 15 C 0.18 6.31 2.60 44.99 0.12 6.43 16 16 H 0.04 1.47 6.44 -2.39 -0.02 1.45 16 17 N -0.74 -34.89 5.12 -322.94 -1.65 -36.55 16 18 C -0.23 -12.35 9.93 84.03 0.83 -11.51 16 19 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 21 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 22 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 C -0.12 -3.70 5.08 30.59 0.16 -3.54 16 27 S 0.20 3.76 22.31 -56.49 -1.26 2.50 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.19 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.40 10.14 6.05 -92.70 -0.56 9.58 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.37 19.22 7.80 -92.71 -0.72 18.49 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -66.18 371.13 0.64 -65.54 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -0.26 Total: 34.60 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.47 Total: -3.17 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.26 Total: -127.53 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.07 Total: -18.57 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.26 Total: 2.50 kcal Total: -66.18 0.64 -65.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981545708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.694 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds