Wall clock time and date at job start Tue Mar 31 2020 14:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30941 * 122.90580 * 2 1 4 4 C 1.29428 * 117.36510 * 180.27241 * 3 2 1 5 5 S 1.70952 * 110.38858 * 359.97438 * 4 3 2 6 6 C 1.35666 * 122.90157 * 180.29438 * 2 1 3 7 7 C 1.46683 * 126.12876 * 359.71028 * 6 2 1 8 8 O 1.21690 * 120.00210 * 359.97438 * 7 6 2 9 9 N 1.34781 * 119.99553 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99582 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46909 * 35.00253 * 10 9 7 12 12 C 1.52997 * 109.46868 * 274.99954 * 10 9 7 13 13 C 1.52997 * 109.46902 * 155.00121 * 10 9 7 14 14 H 1.09007 * 109.50096 * 60.05958 * 13 10 9 15 15 C 1.53035 * 109.49897 * 180.15957 * 13 10 9 16 16 C 1.53040 * 109.54001 * 181.31523 * 15 13 10 17 17 C 1.53198 * 109.31213 * 298.63393 * 16 15 13 18 18 N 1.46926 * 108.77188 * 54.63886 * 17 16 15 19 19 C 1.36938 * 120.63450 * 126.37090 * 18 17 16 20 20 H 1.08003 * 119.99634 * 331.83475 * 19 18 17 21 21 C 1.38808 * 120.00156 * 151.84065 * 19 18 17 22 22 N 1.31615 * 120.00154 * 343.07486 * 21 19 18 23 23 Si 1.86806 * 119.99722 * 163.07911 * 21 19 18 24 24 H 1.48501 * 109.47264 * 59.99786 * 23 21 19 25 25 H 1.48504 * 109.46774 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47147 * 299.99648 * 23 21 19 27 27 C 1.46930 * 118.73986 * 306.38510 * 18 17 16 28 28 H 1.09003 * 109.46713 * 269.71046 * 1 2 3 29 29 H 1.08998 * 109.47057 * 29.70729 * 1 2 3 30 30 H 1.09000 * 109.46972 * 149.70524 * 1 2 3 31 31 H 1.08002 * 124.80555 * 179.97438 * 4 3 2 32 32 H 0.96996 * 120.00271 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.46882 * 180.02562 * 12 10 9 34 34 H 1.08995 * 109.47600 * 299.99876 * 12 10 9 35 35 H 1.08998 * 109.47663 * 60.00239 * 12 10 9 36 36 H 1.09001 * 109.46186 * 301.33919 * 15 13 10 37 37 H 1.09000 * 109.45851 * 61.29525 * 15 13 10 38 38 H 1.08998 * 109.49750 * 178.68530 * 16 15 13 39 39 H 1.08992 * 109.52256 * 58.60388 * 16 15 13 40 40 H 1.08995 * 109.58922 * 294.84919 * 17 16 15 41 41 H 1.08996 * 109.70168 * 174.48920 * 17 16 15 42 42 H 0.97003 * 120.00034 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.58554 * 293.82602 * 27 18 17 44 44 H 1.08996 * 109.58802 * 173.39854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9744 -0.0055 5 16 3.9447 -0.6781 -0.0108 6 6 2.2440 -1.1390 -0.0059 7 6 1.7191 -2.5087 -0.0069 8 8 0.5173 -2.6998 -0.0018 9 7 2.5679 -3.5556 -0.0125 10 6 2.0436 -4.9237 -0.0130 11 1 1.1252 -4.9605 -0.5987 12 6 1.7498 -5.3577 1.4244 13 6 3.0794 -5.8665 -0.6287 14 1 3.9978 -5.8308 -0.0427 15 6 2.5308 -7.2951 -0.6332 16 6 3.5789 -8.2441 -1.2189 17 6 3.8793 -7.8370 -2.6649 18 7 4.2688 -6.4205 -2.6861 19 6 5.4436 -6.0285 -3.2706 20 1 6.2806 -6.7099 -3.3101 21 6 5.5586 -4.7556 -3.8120 22 7 4.4779 -4.0497 -4.0692 23 14 7.2472 -4.0444 -4.1756 24 1 7.9511 -4.9144 -5.1518 25 1 7.0979 -2.6813 -4.7457 26 1 8.0351 -3.9722 -2.9189 27 6 3.3741 -5.4324 -2.0680 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 0.8926 -0.5093 30 1 -0.3633 -0.8873 -0.5184 31 1 4.2058 1.7975 -0.0065 32 1 3.5258 -3.4034 -0.0154 33 1 1.3601 -6.3757 1.4241 34 1 2.6682 -5.3208 2.0101 35 1 1.0119 -4.6860 1.8632 36 1 2.2971 -7.5976 0.3876 37 1 1.6259 -7.3347 -1.2396 38 1 3.1966 -9.2646 -1.2002 39 1 4.4927 -8.1871 -0.6276 40 1 2.9891 -7.9804 -3.2773 41 1 4.6941 -8.4459 -3.0564 42 1 4.5583 -3.1603 -4.4479 43 1 2.4428 -5.3797 -2.6318 44 1 3.8566 -4.4550 -2.0634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025350121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:33 Heat of formation + Delta-G solvation = 18.937945 kcal Electronic energy + Delta-G solvation = -26031.472423 eV Core-core repulsion = 22496.818912 eV Total energy + Delta-G solvation = -3534.653512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32495 -39.25212 -37.77606 -35.16135 -33.13111 -31.97111 -31.34983 -29.88440 -28.86328 -27.96969 -25.26338 -25.04209 -23.64008 -22.09332 -21.61210 -20.30325 -19.59294 -18.84813 -18.34262 -16.88232 -16.54475 -15.91963 -15.37359 -15.03481 -14.80735 -14.23674 -14.12389 -13.71210 -13.65471 -13.57734 -13.29933 -13.18078 -12.68522 -12.51497 -12.49237 -12.42391 -12.16765 -11.95539 -11.42300 -11.32519 -11.06559 -10.92768 -10.72175 -10.46864 -10.26980 -10.12357 -10.04033 -9.93086 -9.71447 -9.59520 -9.53214 -9.42827 -8.92807 -8.72319 -8.50185 -6.68941 -5.81634 -3.24678 0.25181 1.19308 1.57197 2.46533 3.25664 3.33275 3.36205 3.39867 3.40538 4.10831 4.45062 4.88183 4.98435 5.02205 5.16080 5.29772 5.44722 5.48778 5.55288 5.58857 5.69239 5.73978 5.78617 5.79616 5.86697 6.04187 6.11181 6.16270 6.27648 6.33593 6.40468 6.42786 6.48164 6.63417 6.71858 6.80772 6.86008 6.99958 7.30500 7.51734 7.61248 7.69294 7.75736 8.32759 8.41390 9.17913 9.81416 10.39105 11.25899 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.005217 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.273408 B = 5366.192015 C = 7315.250397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.137 3.863 3 N -0.477 5.477 4 C 0.027 3.973 5 S 0.177 5.823 6 C -0.288 4.288 7 C 0.600 3.400 8 O -0.530 6.530 9 N -0.707 5.707 10 C 0.151 3.849 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.122 4.122 14 H 0.068 0.932 15 C -0.101 4.101 16 C -0.133 4.133 17 C 0.143 3.857 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.897 3.103 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.180 3.820 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.204 0.796 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.017 0.983 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 4.210 11.431 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 N -0.191 5.191 4 C -0.269 4.269 5 S 0.432 5.568 6 C -0.412 4.412 7 C 0.385 3.615 8 O -0.409 6.409 9 N -0.357 5.357 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.143 4.143 14 H 0.086 0.914 15 C -0.139 4.139 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.543 5.543 23 Si 0.727 3.273 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.054 3.946 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.221 0.779 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.021 4.245 11.318 12.460 hybrid contribution 0.719 0.692 -0.327 1.050 sum -2.302 4.937 10.991 12.267 Atomic orbital electron populations 1.20635 0.86034 1.04495 1.03439 1.20706 0.98717 0.84970 0.95691 1.66116 1.04906 1.31374 1.16740 1.28668 0.95350 1.00690 1.02145 1.84205 1.05361 1.02815 1.64374 1.25589 0.96278 0.99381 1.19997 1.16595 0.86175 0.82350 0.76384 1.90749 1.14220 1.84966 1.50946 1.45943 1.09610 1.06067 1.74036 1.21046 0.98373 0.79646 0.96236 0.89412 1.22218 1.01524 1.01653 0.96570 1.22177 0.96747 0.94024 1.01317 0.91392 1.21433 0.98401 0.94524 0.99566 1.21992 0.98517 0.97204 0.99504 1.20929 0.97488 0.87217 0.92705 1.44025 1.22129 1.00659 1.64604 1.19135 0.89178 0.98783 1.31254 0.91792 1.25028 0.96692 0.99281 0.98451 1.70031 1.26364 1.12008 1.45899 0.86456 0.84359 0.78328 0.78195 1.20860 1.21599 1.20982 1.20774 0.93282 0.94501 0.86052 0.90374 0.90952 0.88053 0.77942 0.76620 0.91293 0.92754 0.92598 0.93047 0.92532 0.93109 0.92462 0.96569 0.92960 0.93618 0.96499 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.69 36.01 0.35 -0.81 16 2 C 0.14 2.04 6.79 -83.89 -0.57 1.47 16 3 N -0.48 -6.68 10.50 -11.53 -0.12 -6.80 16 4 C 0.03 0.30 12.22 51.75 0.63 0.94 16 5 S 0.18 2.23 22.35 -107.50 -2.40 -0.18 16 6 C -0.29 -4.42 6.48 -37.09 -0.24 -4.66 16 7 C 0.60 10.14 7.74 -12.85 -0.10 10.04 16 8 O -0.53 -9.85 13.94 5.20 0.07 -9.78 16 9 N -0.71 -11.41 4.47 -55.11 -0.25 -11.65 16 10 C 0.15 2.42 2.16 -67.93 -0.15 2.27 16 11 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 12 C -0.16 -2.15 9.14 37.16 0.34 -1.81 16 13 C -0.12 -2.14 1.97 -90.50 -0.18 -2.32 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.10 -1.60 4.85 -26.69 -0.13 -1.73 16 16 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 17 C 0.14 2.93 6.52 -3.71 -0.02 2.91 16 18 N -0.59 -14.36 2.99 -172.31 -0.52 -14.87 16 19 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 20 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -25.24 11.20 55.49 0.62 -24.62 16 23 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.18 4.07 4.34 -3.71 -0.02 4.06 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.50 6.02 -51.93 -0.31 1.19 16 31 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.40 6.22 7.60 -40.82 -0.31 5.91 16 33 H 0.07 0.83 6.40 -51.92 -0.33 0.50 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.70 6.36 -51.93 -0.33 0.36 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.18 5.57 -51.93 -0.29 1.89 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -30.66 361.98 -9.22 -39.88 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.58 Total: 5.55 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.48 Total: 1.13 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.26 Total: -57.95 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.40 Total: -0.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.66 -9.22 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025350121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.819 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds