Wall clock time and date at job start Tue Mar 31 2020 15:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47306 * 2 1 4 4 C 1.50700 * 109.47054 * 119.99629 * 2 1 3 5 5 N 1.28657 * 124.72264 * 120.28765 * 4 2 1 6 6 C 1.33558 * 115.76838 * 180.22053 * 5 4 2 7 7 C 1.47266 * 123.14254 * 179.75752 * 6 5 4 8 8 O 1.21623 * 120.00037 * 179.73043 * 7 6 5 9 9 N 1.34776 * 119.99907 * 359.72956 * 7 6 5 10 10 C 1.46496 * 120.00278 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47440 * 180.02562 * 10 9 7 12 12 H 1.08992 * 112.85041 * 314.67147 * 11 10 9 13 13 C 1.53787 * 113.61063 * 85.86583 * 11 10 9 14 14 C 1.53950 * 87.01708 * 139.95171 * 13 11 10 15 15 H 1.09004 * 113.66796 * 220.06338 * 14 13 11 16 16 N 1.46499 * 113.61498 * 89.19953 * 14 13 11 17 17 C 1.36931 * 120.00262 * 107.46465 * 16 14 13 18 18 H 1.08008 * 119.99973 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00180 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99727 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 119.99876 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47278 * 90.00552 * 21 19 17 23 23 H 1.48506 * 109.47063 * 210.00071 * 21 19 17 24 24 H 1.48494 * 109.47531 * 330.00158 * 21 19 17 25 25 C 1.53775 * 87.11553 * 334.63509 * 14 13 11 26 26 C 1.35208 * 113.71278 * 359.49267 * 6 5 4 27 27 S 1.70772 * 124.72095 * 299.97930 * 4 2 1 28 28 H 1.08998 * 109.47008 * 60.00265 * 1 2 3 29 29 H 1.08996 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47166 * 300.00004 * 1 2 3 31 31 H 1.08997 * 109.47851 * 239.99847 * 2 1 3 32 32 H 1.08992 * 109.47238 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46871 * 299.99819 * 3 2 1 34 34 H 1.09005 * 109.47111 * 59.99714 * 3 2 1 35 35 H 0.97003 * 119.99512 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.47006 * 300.00513 * 10 9 7 37 37 H 1.09001 * 109.46897 * 60.00357 * 10 9 7 38 38 H 1.08994 * 113.61350 * 254.53325 * 13 11 10 39 39 H 1.09003 * 113.61399 * 25.43007 * 13 11 10 40 40 H 0.97001 * 120.00054 * 287.46718 * 16 14 13 41 41 H 0.97001 * 119.99177 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.61799 * 270.81932 * 25 14 13 43 43 H 1.09003 * 113.61630 * 139.90629 * 25 14 13 44 44 H 1.08001 * 125.58175 * 180.26894 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7794 -1.7577 1.2184 6 6 3.1165 -2.2443 2.4157 7 6 3.9604 -3.4384 2.5909 8 8 4.2363 -3.8292 3.7091 9 7 4.4268 -4.0981 1.5122 10 6 5.2667 -5.2857 1.6864 11 6 5.6586 -5.8390 0.3149 12 1 4.8184 -5.8877 -0.3777 13 6 6.9112 -5.1758 -0.2818 14 6 7.3248 -6.5777 -0.7653 15 1 8.3907 -6.7800 -0.6603 16 7 6.8100 -6.9157 -2.0946 17 6 7.6590 -6.9543 -3.1682 18 1 8.7084 -6.7360 -3.0349 19 6 7.1711 -7.2739 -4.4278 20 7 7.9874 -7.3115 -5.4597 21 14 5.3564 -7.6521 -4.6582 22 1 4.6244 -6.3973 -4.9660 23 1 5.1891 -8.6106 -5.7801 24 1 4.8131 -8.2492 -3.4118 25 6 6.4746 -7.1405 0.3859 26 6 2.6154 -1.5347 3.4517 27 16 1.6953 -0.2327 2.8351 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8935 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 4.2069 -3.7861 0.6204 36 1 6.1663 -5.0165 2.2398 37 1 4.7130 -6.0442 2.2399 38 1 6.6930 -4.4803 -1.0921 39 1 7.5825 -4.7568 0.4678 40 1 5.8676 -7.1120 -2.2142 41 1 7.6463 -7.5345 -6.3400 42 1 7.0263 -7.2596 1.3184 43 1 5.9044 -8.0288 0.1138 44 1 2.7710 -1.7545 4.4976 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086506021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:40 Heat of formation + Delta-G solvation = 27.032787 kcal Electronic energy + Delta-G solvation = -24192.232704 eV Core-core repulsion = 20657.930211 eV Total energy + Delta-G solvation = -3534.302493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75606 -39.27757 -38.42649 -35.92899 -34.77641 -33.21722 -30.73872 -30.39668 -28.09132 -27.68839 -25.77344 -25.15996 -23.80497 -22.92696 -21.65068 -21.03347 -20.08798 -18.87160 -18.29147 -17.67075 -16.87216 -16.16793 -15.80500 -15.69184 -15.08589 -14.76638 -14.68784 -14.40420 -14.20543 -13.67564 -13.58925 -13.48775 -13.21366 -12.80115 -12.67758 -12.48837 -12.37174 -12.16287 -12.02888 -11.71910 -11.55696 -11.44351 -11.35416 -10.92370 -10.51421 -10.45658 -10.21742 -10.14943 -10.00170 -9.95602 -9.66245 -9.53040 -9.30652 -8.99375 -8.90785 -7.30534 -5.80186 -3.16194 0.18832 0.86130 1.27001 1.70612 3.12142 3.19958 3.35087 3.37874 3.43097 3.55840 4.30588 4.49326 4.55886 4.57940 4.80012 4.88856 4.94372 4.96041 5.00659 5.09534 5.11177 5.29882 5.32625 5.38798 5.43493 5.47900 5.52211 5.60522 5.71158 5.72405 5.75607 5.85882 5.92304 6.13221 6.24264 6.33300 6.49330 6.64260 6.74430 6.90188 7.06462 7.50140 7.97874 8.08113 8.39667 9.17449 9.89776 10.09128 11.37987 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.002783 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.977109 B =10057.850352 C =11605.154024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.148 4.148 4 C 0.036 3.964 5 N -0.442 5.442 6 C 0.012 3.988 7 C 0.591 3.409 8 O -0.541 6.541 9 N -0.705 5.705 10 C 0.130 3.870 11 C -0.124 4.124 12 H 0.090 0.910 13 C -0.167 4.167 14 C 0.173 3.827 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.148 4.148 26 C -0.229 4.229 27 S 0.208 5.792 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 17.836 17.297 29.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 C -0.207 4.207 4 C -0.244 4.244 5 N -0.157 5.157 6 C -0.122 4.122 7 C 0.374 3.626 8 O -0.419 6.419 9 N -0.355 5.355 10 C 0.007 3.993 11 C -0.142 4.142 12 H 0.108 0.892 13 C -0.207 4.207 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.188 4.188 26 C -0.372 4.372 27 S 0.465 5.535 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.447 18.063 17.828 30.243 hybrid contribution -0.846 -0.969 -0.544 1.397 sum -17.293 17.094 17.284 29.833 Atomic orbital electron populations 1.21941 0.92988 1.02895 1.02830 1.19880 0.96194 0.95541 0.92805 1.21946 1.02047 0.93869 1.02818 1.27228 1.00355 0.96962 0.99841 1.66948 1.12344 1.10390 1.26008 1.20457 1.04252 1.00178 0.87358 1.17070 0.79191 0.81535 0.84845 1.90805 1.59338 1.67503 1.24225 1.45894 1.51022 1.29177 1.09394 1.21541 0.94098 0.85836 0.97824 1.22757 0.98231 0.98370 0.94884 0.89179 1.23885 0.96156 1.00547 1.00148 1.21032 0.96589 0.91896 0.84348 0.91057 1.42517 1.07626 1.83198 1.03662 1.19118 0.92762 1.40101 0.85601 0.89018 1.24679 0.97237 1.01583 0.95554 1.69705 1.33767 1.55100 0.99399 0.86566 0.86666 0.78117 0.77297 1.21018 1.21642 1.20322 1.23459 0.98955 0.96089 1.00249 1.26618 1.04089 1.00458 1.05990 1.82745 1.45139 1.25506 1.00099 0.90873 0.91859 0.92230 0.87632 0.91779 0.90869 0.92239 0.75287 0.91157 0.91553 0.91252 0.90940 0.80511 0.92995 0.89958 0.91392 0.79373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.09 37.16 0.34 -0.43 16 2 C -0.02 -0.15 3.34 -91.77 -0.31 -0.46 16 3 C -0.15 -0.79 9.09 37.16 0.34 -0.45 16 4 C 0.04 0.33 6.00 -13.61 -0.08 0.25 16 5 N -0.44 -5.25 10.12 -8.51 -0.09 -5.33 16 6 C 0.01 0.16 6.70 -84.53 -0.57 -0.41 16 7 C 0.59 8.59 7.80 -12.59 -0.10 8.49 16 8 O -0.54 -9.14 16.71 5.26 0.09 -9.05 16 9 N -0.70 -9.60 5.55 -61.43 -0.34 -9.94 16 10 C 0.13 1.76 5.50 -4.04 -0.02 1.73 16 11 C -0.12 -1.80 3.63 -89.80 -0.33 -2.13 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.17 -2.72 7.44 -25.83 -0.19 -2.91 16 14 C 0.17 3.27 4.56 -67.03 -0.31 2.96 16 15 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 16 N -0.73 -17.07 5.11 -52.55 -0.27 -17.34 16 17 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 21 Si 0.88 21.98 27.73 -169.99 -4.71 17.26 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 25 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 26 C -0.23 -2.31 10.62 29.65 0.31 -2.00 16 27 S 0.21 1.50 22.22 -107.50 -2.39 -0.89 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.26 7.91 -51.93 -0.41 -0.15 16 31 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.26 7.91 -51.93 -0.41 -0.15 16 35 H 0.41 5.39 7.99 -40.82 -0.33 5.06 16 36 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 40 H 0.36 8.32 5.76 -40.82 -0.24 8.08 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.19 1.69 8.03 -52.49 -0.42 1.27 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -33.34 378.52 -9.45 -42.79 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.86 Total: 9.99 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.35 Total: -4.79 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.08 Total: -61.01 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.39 Total: -0.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.34 -9.45 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.820 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds