Wall clock time and date at job start Tue Mar 31 2020 13:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30943 * 122.90168 * 2 1 4 4 C 1.29427 * 117.36064 * 180.02562 * 3 2 1 5 5 S 1.70953 * 110.39244 * 359.72404 * 4 3 2 6 6 C 1.35659 * 122.90268 * 180.02562 * 2 1 3 7 7 C 1.46681 * 126.13329 * 359.97438 * 6 2 1 8 8 O 1.21692 * 119.99818 * 319.47958 * 7 6 2 9 9 N 1.34772 * 120.00001 * 139.47995 * 7 6 2 10 10 C 1.46921 * 120.63213 * 354.34963 * 9 7 6 11 11 C 1.53189 * 108.77767 * 233.62995 * 10 9 7 12 12 C 1.53041 * 109.31040 * 305.36553 * 11 10 9 13 13 H 1.09005 * 109.45874 * 181.38515 * 12 11 10 14 14 C 1.53001 * 109.46156 * 301.33847 * 12 11 10 15 15 C 1.53040 * 109.54079 * 61.36254 * 12 11 10 16 16 H 1.09002 * 109.52229 * 58.60606 * 15 12 11 17 17 C 1.52999 * 109.49609 * 178.68222 * 15 12 11 18 18 N 1.46500 * 109.47127 * 184.83549 * 17 15 12 19 19 C 1.36934 * 120.00371 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99558 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00235 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46907 * 270.00103 * 23 21 19 25 25 H 1.48507 * 109.47363 * 29.99642 * 23 21 19 26 26 H 1.48501 * 109.47400 * 150.00171 * 23 21 19 27 27 C 1.46927 * 120.62897 * 174.36811 * 9 7 6 28 28 H 1.09004 * 109.46914 * 269.99919 * 1 2 3 29 29 H 1.09000 * 109.47437 * 29.99606 * 1 2 3 30 30 H 1.08995 * 109.47489 * 150.00015 * 1 2 3 31 31 H 1.08005 * 124.80215 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.59015 * 353.41582 * 10 9 7 33 33 H 1.09005 * 109.59312 * 113.69828 * 10 9 7 34 34 H 1.08998 * 109.50123 * 65.31109 * 11 10 9 35 35 H 1.08997 * 109.50147 * 185.41351 * 11 10 9 36 36 H 1.08993 * 109.47420 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.47453 * 300.07502 * 14 12 11 38 38 H 1.09003 * 109.46776 * 60.06819 * 14 12 11 39 39 H 1.09009 * 109.46885 * 64.84364 * 17 15 12 40 40 H 1.08998 * 109.47805 * 304.84085 * 17 15 12 41 41 H 0.97006 * 119.99784 * 0.02562 * 18 17 15 42 42 H 0.97000 * 120.00135 * 180.02562 * 22 21 19 43 43 H 1.08993 * 109.58743 * 6.58450 * 27 9 7 44 44 H 1.08998 * 109.58754 * 246.15490 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9744 -0.0005 5 16 3.9447 -0.6780 0.0066 6 6 2.2439 -1.1390 -0.0005 7 6 1.7191 -2.5087 -0.0006 8 8 0.7536 -2.7903 0.6845 9 7 2.3063 -3.4552 -0.7593 10 6 3.3930 -3.1057 -1.6842 11 6 3.0347 -3.6185 -3.0825 12 6 2.7290 -5.1163 -3.0092 13 1 2.4977 -5.4890 -4.0071 14 6 3.9480 -5.8589 -2.4582 15 6 1.5301 -5.3496 -2.0872 16 1 0.6674 -4.8013 -2.4656 17 6 1.2049 -6.8439 -2.0405 18 7 -0.0112 -7.0547 -1.2513 19 6 -0.4992 -8.3213 -1.0704 20 1 0.0128 -9.1649 -1.5092 21 6 -1.6518 -8.5209 -0.3231 22 7 -2.2760 -7.4926 0.2112 23 14 -2.3171 -10.2487 -0.0757 24 1 -3.2676 -10.5743 -1.1692 25 1 -1.1929 -11.2190 -0.0918 26 1 -3.0195 -10.3265 1.2304 27 6 1.8714 -4.8563 -0.6776 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 4.2057 1.7976 -0.0002 32 1 3.5148 -2.0228 -1.7123 33 1 4.3211 -3.5691 -1.3495 34 1 2.1582 -3.0861 -3.4518 35 1 3.8738 -3.4511 -3.7576 36 1 3.7307 -6.9257 -2.4063 37 1 4.8020 -5.6929 -3.1147 38 1 4.1794 -5.4870 -1.4600 39 1 2.0341 -7.3820 -1.5808 40 1 1.0491 -7.2138 -3.0539 41 1 -0.4712 -6.2968 -0.8576 42 1 -3.0812 -7.6321 0.7337 43 1 0.9893 -4.9286 -0.0416 44 1 2.6748 -5.4646 -0.2622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132660310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:14 Heat of formation + Delta-G solvation = 21.922619 kcal Electronic energy + Delta-G solvation = -25818.488999 eV Core-core repulsion = 22283.964912 eV Total energy + Delta-G solvation = -3534.524086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70887 -39.78667 -37.94305 -34.98242 -33.56759 -32.21508 -31.79295 -29.94325 -28.77146 -27.49902 -25.59665 -25.21606 -24.65870 -23.19070 -21.49617 -21.14638 -19.08574 -18.73255 -18.02737 -17.07617 -16.78372 -16.32608 -15.57194 -15.15958 -14.95718 -14.81168 -14.57716 -14.25464 -13.81814 -13.61216 -13.54018 -13.22377 -13.03132 -12.80369 -12.66139 -12.46559 -12.43184 -12.00160 -11.70275 -11.60426 -11.26611 -11.10287 -10.92892 -10.80069 -10.65886 -10.33517 -10.22981 -10.17980 -9.94318 -9.84218 -9.61473 -9.48320 -9.04996 -8.82849 -8.50820 -6.86677 -5.69640 -2.99461 0.09492 0.89766 1.30284 2.31957 2.84129 3.11063 3.47204 3.51804 3.54169 3.88968 4.42272 4.60031 4.66567 4.78093 4.81689 4.87380 4.95299 5.14989 5.21615 5.29026 5.51843 5.55648 5.59517 5.60514 5.64829 5.66933 5.69675 5.79576 5.87007 5.93050 6.00548 6.11802 6.14901 6.30808 6.33007 6.34825 6.54481 6.60812 6.77387 6.89272 7.30623 7.42002 7.74502 8.12661 8.47980 9.59012 10.16925 10.51045 11.52574 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.003486 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.819164 B = 8031.273912 C = 9250.294930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.132 3.868 3 N -0.471 5.471 4 C 0.021 3.979 5 S 0.170 5.830 6 C -0.282 4.282 7 C 0.590 3.410 8 O -0.507 6.507 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.126 4.126 12 C -0.085 4.085 13 H 0.075 0.925 14 C -0.153 4.153 15 C -0.102 4.102 16 H 0.074 0.926 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.282 1.282 26 H -0.292 1.292 27 C 0.121 3.879 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.204 0.796 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.105 0.895 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.712 16.825 -5.036 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 N -0.185 5.185 4 C -0.275 4.275 5 S 0.424 5.576 6 C -0.406 4.406 7 C 0.375 3.625 8 O -0.383 6.383 9 N -0.335 5.335 10 C -0.027 4.027 11 C -0.164 4.164 12 C -0.104 4.104 13 H 0.093 0.907 14 C -0.210 4.210 15 C -0.122 4.122 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.208 1.208 26 H -0.218 1.218 27 C 0.000 4.000 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.220 0.780 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.959 16.529 -4.631 24.843 hybrid contribution -1.238 -0.539 0.228 1.369 sum 16.722 15.990 -4.403 23.551 Atomic orbital electron populations 1.20482 0.85944 1.03637 1.04078 1.20669 0.98696 0.84945 0.96102 1.66106 1.04938 1.31269 1.16182 1.28740 0.95380 1.00914 1.02461 1.84030 1.05476 1.02498 1.65558 1.25558 0.96282 0.99381 1.19366 1.16769 0.83011 0.82291 0.80455 1.90922 1.25413 1.80229 1.41703 1.48019 1.36384 1.08848 1.40291 1.22026 0.90075 1.00586 0.90045 1.21917 1.02039 0.96779 0.95688 1.21083 0.95434 0.94167 0.99729 0.90667 1.21991 0.96931 1.01280 1.00820 1.21692 0.97441 0.98583 0.94449 0.90711 1.20676 0.90238 0.90774 0.95019 1.42424 1.27158 1.06743 1.61473 1.19190 1.06097 0.85289 1.26758 0.91266 1.24751 0.98294 0.97121 1.00699 1.69674 1.20475 1.28539 1.39015 0.86218 0.78767 0.84188 0.77162 1.21792 1.20812 1.21789 1.21820 1.01850 0.78032 0.98262 0.89501 0.90474 0.89862 0.77952 0.90275 0.90693 0.91449 0.90684 0.91671 0.93073 0.92513 0.95921 0.96134 0.78094 0.93487 0.87649 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.62 36.01 0.35 -0.68 16 2 C 0.13 1.72 6.79 -83.89 -0.57 1.15 16 3 N -0.47 -5.50 10.50 -11.53 -0.12 -5.62 16 4 C 0.02 0.17 12.22 51.75 0.63 0.80 16 5 S 0.17 1.47 20.27 -107.50 -2.18 -0.71 16 6 C -0.28 -3.68 5.40 -37.10 -0.20 -3.88 16 7 C 0.59 9.42 7.08 -12.85 -0.09 9.33 16 8 O -0.51 -10.20 15.38 5.20 0.08 -10.12 16 9 N -0.60 -8.55 2.97 -174.32 -0.52 -9.07 16 10 C 0.10 1.00 5.20 -3.71 -0.02 0.98 16 11 C -0.13 -1.26 5.63 -26.61 -0.15 -1.41 16 12 C -0.09 -1.02 2.71 -90.58 -0.25 -1.26 16 13 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.15 -1.65 8.12 37.16 0.30 -1.35 16 15 C -0.10 -1.63 2.15 -90.50 -0.19 -1.83 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.16 3.17 5.19 -4.04 -0.02 3.15 16 18 N -0.73 -18.77 5.38 -59.91 -0.32 -19.09 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C 0.12 2.01 5.06 -3.71 -0.02 1.99 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.15 7.23 -51.93 -0.38 0.77 16 31 H 0.20 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.08 0.74 4.54 -38.49 -0.17 0.56 16 33 H 0.07 0.68 6.71 -51.93 -0.35 0.33 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 39 H 0.02 0.45 6.72 -51.92 -0.35 0.10 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 10.57 6.89 -40.82 -0.28 10.29 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.11 2.19 6.20 -51.93 -0.32 1.87 16 44 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -34.18 354.94 -8.63 -42.81 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.15 Total: 7.31 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.48 Total: -0.47 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.24 Total: -61.94 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.18 Total: -0.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.18 -8.63 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132660310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.733 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds