Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47463 * 2 1 4 4 N 1.46496 * 109.47533 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00199 * 269.75328 * 4 3 2 6 6 H 1.07995 * 119.99730 * 322.09224 * 5 4 3 7 7 C 1.38817 * 119.99709 * 142.09454 * 5 4 3 8 8 N 1.31622 * 119.99520 * 156.97196 * 7 5 4 9 9 Si 1.86797 * 120.00408 * 336.97200 * 7 5 4 10 10 H 1.48496 * 109.47373 * 95.70165 * 9 7 5 11 11 H 1.48504 * 109.47018 * 215.70365 * 9 7 5 12 12 H 1.48500 * 109.46698 * 335.70052 * 9 7 5 13 13 C 1.46508 * 119.99633 * 89.74967 * 4 3 2 14 14 C 1.50698 * 109.46994 * 90.00380 * 13 4 3 15 15 O 1.21280 * 119.99839 * 359.97438 * 14 13 4 16 16 N 1.34774 * 119.99715 * 179.97438 * 14 13 4 17 17 C 1.38999 * 120.00027 * 179.97438 * 16 14 13 18 18 N 1.29254 * 124.95514 * 0.02562 * 17 16 14 19 19 C 1.32748 * 117.67987 * 179.97438 * 18 17 16 20 20 C 1.34431 * 113.22314 * 0.02562 * 19 18 17 21 21 S 1.70891 * 124.96099 * 179.97438 * 17 16 14 22 22 C 1.51036 * 125.20964 * 179.72001 * 20 19 18 23 23 C 1.53116 * 108.67869 * 344.37355 * 22 20 19 24 24 C 1.53156 * 109.12573 * 48.93428 * 23 22 20 25 25 C 1.52148 * 124.10174 * 180.02562 * 19 18 17 26 26 H 1.08997 * 109.47331 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47565 * 300.00614 * 1 2 3 28 28 H 1.09007 * 109.46779 * 60.00184 * 1 2 3 29 29 H 1.09003 * 109.47565 * 239.99386 * 2 1 3 30 30 H 1.09007 * 109.46779 * 119.99816 * 2 1 3 31 31 H 1.08998 * 109.46838 * 59.99416 * 3 2 1 32 32 H 1.09000 * 109.47016 * 300.00099 * 3 2 1 33 33 H 0.97001 * 119.99991 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46975 * 329.99900 * 13 4 3 35 35 H 1.09003 * 109.46660 * 210.00249 * 13 4 3 36 36 H 0.96995 * 120.00287 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.61521 * 103.94252 * 22 20 19 38 38 H 1.09001 * 109.61714 * 224.48131 * 22 20 19 39 39 H 1.08997 * 109.35577 * 289.11811 * 23 22 20 40 40 H 1.08999 * 109.61181 * 168.90160 * 23 22 20 41 41 H 1.09001 * 109.47847 * 169.82441 * 24 23 22 42 42 H 1.08996 * 109.48111 * 49.79237 * 24 23 22 43 43 H 1.09005 * 109.58559 * 282.21077 * 25 19 18 44 44 H 1.08997 * 109.59133 * 42.49964 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4478 1.1868 6 1 3.8198 2.0261 2.0206 7 6 5.3577 0.7098 1.3173 8 7 6.2443 1.0378 2.2330 9 14 5.6717 -0.7488 0.1933 10 1 6.5093 -0.3179 -0.9547 11 1 6.3786 -1.8135 0.9498 12 1 4.3767 -1.2747 -0.3085 13 6 4.2380 1.4368 -1.2679 14 6 4.4894 2.8556 -1.7092 15 8 4.0947 3.7804 -1.0311 16 7 5.1528 3.0967 -2.8573 17 6 5.3842 4.4053 -3.2647 18 7 5.0076 5.4596 -2.6186 19 6 5.3066 6.6427 -3.1412 20 6 5.9780 6.5548 -4.3026 21 16 6.2092 4.8552 -4.6920 22 6 6.4457 7.7292 -5.1291 23 6 5.7106 8.9860 -4.6553 24 6 5.7992 9.0736 -3.1288 25 6 4.9359 7.9743 -2.5055 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 7.0607 0.5219 2.3245 34 1 3.6492 0.9195 -2.0254 35 1 5.1903 0.9235 -1.1348 36 1 5.4681 2.3570 -3.3998 37 1 7.5191 7.8652 -4.9971 38 1 6.2237 7.5481 -6.1808 39 1 4.6649 8.9284 -4.9573 40 1 6.1718 9.8686 -5.0986 41 1 5.4398 10.0485 -2.7992 42 1 6.8354 8.9436 -2.8167 43 1 3.8829 8.1869 -2.6903 44 1 5.1166 7.9295 -1.4316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112697139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = 28.179327 kcal Electronic energy + Delta-G solvation = -25223.366070 eV Core-core repulsion = 21689.113295 eV Total energy + Delta-G solvation = -3534.252775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26739 -39.00052 -36.65115 -35.82491 -34.02150 -32.91776 -31.32505 -30.92302 -29.07017 -27.50788 -25.81157 -24.40410 -23.44439 -22.44012 -21.89856 -20.36401 -19.93635 -18.77317 -18.02234 -17.07523 -16.28560 -16.17437 -15.55785 -15.27912 -14.69430 -14.55277 -14.47064 -14.05379 -13.96845 -13.64239 -13.36469 -13.09013 -12.95585 -12.74260 -12.57957 -12.48514 -12.10344 -11.93159 -11.68170 -11.25232 -11.02754 -10.96755 -10.86642 -10.78569 -10.60581 -10.55696 -10.30485 -10.06139 -9.90374 -9.73843 -9.59906 -9.02247 -8.86734 -8.56006 -7.82537 -6.95819 -6.06119 -3.46937 0.94997 1.15265 1.79062 2.92585 3.13858 3.19889 3.36490 3.40287 3.54949 4.37467 4.41549 4.64238 4.71322 4.81056 4.88971 5.09605 5.19884 5.29903 5.39579 5.44368 5.50851 5.59586 5.66886 5.69980 5.71884 5.82922 5.84445 5.87517 5.95241 6.04498 6.07397 6.13435 6.14814 6.26935 6.36523 6.49644 6.51603 6.63413 6.85743 7.04601 7.39715 7.93618 8.17878 8.36185 8.74578 8.91345 9.60949 9.98432 11.09225 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003443 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.545636 B = 8129.753085 C = 8552.404073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.154 3.846 4 N -0.574 5.574 5 C -0.261 4.261 6 H 0.082 0.918 7 C 0.036 3.964 8 N -0.890 5.890 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.123 3.877 14 C 0.473 3.527 15 O -0.445 6.445 16 N -0.647 5.647 17 C 0.299 3.701 18 N -0.481 5.481 19 C 0.105 3.895 20 C -0.259 4.259 21 S 0.077 5.923 22 C -0.030 4.030 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.040 4.040 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 8.922 -17.391 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.029 3.971 4 N -0.292 5.292 5 C -0.390 4.390 6 H 0.099 0.901 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.694 3.306 10 H -0.215 1.215 11 H -0.223 1.223 12 H -0.185 1.185 13 C -0.008 4.008 14 C 0.255 3.745 15 O -0.309 6.309 16 N -0.301 5.301 17 C -0.071 4.071 18 N -0.202 5.202 19 C -0.027 4.027 20 C -0.381 4.381 21 S 0.330 5.670 22 C -0.070 4.070 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.080 4.080 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.624 8.772 -16.933 19.140 hybrid contribution 0.490 -0.691 -0.465 0.967 sum -1.133 8.081 -17.399 19.217 Atomic orbital electron populations 1.21720 0.96985 1.00591 1.01174 1.22124 0.94028 1.00363 1.01970 1.20949 0.82881 0.93515 0.99760 1.43811 1.00911 1.83750 1.00770 1.18806 1.06298 1.23737 0.90195 0.90093 1.25499 0.96583 0.97858 0.96616 1.69907 1.08159 1.38901 1.36008 0.87101 0.78301 0.85047 0.80174 1.21455 1.22348 1.18509 1.21484 0.98933 0.89904 0.90522 1.23817 0.76880 0.95348 0.78499 1.90735 1.44839 1.45387 1.49923 1.44261 1.57676 1.02414 1.25775 1.23718 0.98461 0.90596 0.94319 1.66115 1.25072 0.96551 1.32421 1.20754 0.97028 0.93223 0.91655 1.25511 1.13636 0.96013 1.02970 1.83619 1.57583 1.01458 1.24366 1.20001 0.99821 0.89894 0.97322 1.21575 1.01039 0.96694 0.96061 1.21576 1.00618 0.98251 0.95187 1.20371 1.00048 0.87390 1.00220 0.93614 0.92948 0.93469 0.93238 0.91484 0.92508 0.94331 0.92586 0.90689 0.89824 0.74937 0.90693 0.90867 0.91449 0.91059 0.90878 0.91417 0.90021 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.15 0.37 -1.71 16 2 C -0.15 -2.57 6.26 -26.73 -0.17 -2.74 16 3 C 0.15 3.13 5.67 -4.04 -0.02 3.11 16 4 N -0.57 -13.64 1.56 -174.61 -0.27 -13.91 16 5 C -0.26 -7.36 9.90 -15.06 -0.15 -7.51 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 7 C 0.04 1.01 5.29 -17.43 -0.09 0.92 16 8 N -0.89 -27.16 13.97 55.49 0.78 -26.38 16 9 Si 0.86 20.71 25.10 -169.99 -4.27 16.45 16 10 H -0.29 -6.46 6.68 56.52 0.38 -6.08 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.12 2.58 5.00 -5.19 -0.03 2.55 16 14 C 0.47 10.14 7.86 -10.99 -0.09 10.05 16 15 O -0.44 -11.50 15.07 5.56 0.08 -11.42 16 16 N -0.65 -11.17 5.40 -13.16 -0.07 -11.24 16 17 C 0.30 5.29 8.02 -87.65 -0.70 4.58 16 18 N -0.48 -9.54 8.61 -10.54 -0.09 -9.63 16 19 C 0.11 1.68 6.77 -82.82 -0.56 1.12 16 20 C -0.26 -3.48 6.38 -35.49 -0.23 -3.71 16 21 S 0.08 1.02 23.20 -107.50 -2.49 -1.48 16 22 C -0.03 -0.29 6.27 -27.66 -0.17 -0.46 16 23 C -0.11 -0.95 5.94 -26.59 -0.16 -1.10 16 24 C -0.12 -1.11 5.88 -26.63 -0.16 -1.27 16 25 C -0.04 -0.52 6.29 -27.14 -0.17 -0.69 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 32 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.08 1.84 3.37 -51.93 -0.18 1.66 16 36 H 0.41 5.35 8.82 -40.82 -0.36 4.99 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.66 8.11 -51.93 -0.42 0.23 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -35.22 367.77 -9.98 -45.21 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.87 Total: 3.72 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.32 Total: 3.14 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.34 Total: -61.16 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.27 Total: 16.45 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.22 -9.98 -45.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112697139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.386 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds