Wall clock time and date at job start Tue Mar 31 2020 14:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47463 * 2 1 4 4 N 1.46496 * 109.47533 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00199 * 269.75328 * 4 3 2 6 6 H 1.07995 * 119.99730 * 322.09224 * 5 4 3 7 7 C 1.38817 * 119.99709 * 142.09454 * 5 4 3 8 8 N 1.31622 * 119.99520 * 156.97196 * 7 5 4 9 9 Si 1.86797 * 120.00408 * 336.97200 * 7 5 4 10 10 H 1.48496 * 109.47373 * 95.70165 * 9 7 5 11 11 H 1.48504 * 109.47018 * 215.70365 * 9 7 5 12 12 H 1.48500 * 109.46698 * 335.70052 * 9 7 5 13 13 C 1.46508 * 119.99633 * 89.74967 * 4 3 2 14 14 C 1.50698 * 109.46994 * 90.00380 * 13 4 3 15 15 O 1.21280 * 119.99839 * 359.97438 * 14 13 4 16 16 N 1.34774 * 119.99715 * 179.97438 * 14 13 4 17 17 C 1.38999 * 120.00027 * 179.97438 * 16 14 13 18 18 N 1.29254 * 124.95514 * 0.02562 * 17 16 14 19 19 C 1.32748 * 117.67987 * 179.97438 * 18 17 16 20 20 C 1.34431 * 113.22314 * 0.02562 * 19 18 17 21 21 S 1.70891 * 124.96099 * 179.97438 * 17 16 14 22 22 C 1.51036 * 125.20964 * 179.72001 * 20 19 18 23 23 C 1.53116 * 108.67869 * 344.37355 * 22 20 19 24 24 C 1.53156 * 109.12573 * 48.93428 * 23 22 20 25 25 C 1.52148 * 124.10174 * 180.02562 * 19 18 17 26 26 H 1.08997 * 109.47331 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47565 * 300.00614 * 1 2 3 28 28 H 1.09007 * 109.46779 * 60.00184 * 1 2 3 29 29 H 1.09003 * 109.47565 * 239.99386 * 2 1 3 30 30 H 1.09007 * 109.46779 * 119.99816 * 2 1 3 31 31 H 1.08998 * 109.46838 * 59.99416 * 3 2 1 32 32 H 1.09000 * 109.47016 * 300.00099 * 3 2 1 33 33 H 0.97001 * 119.99991 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46975 * 329.99900 * 13 4 3 35 35 H 1.09003 * 109.46660 * 210.00249 * 13 4 3 36 36 H 0.96995 * 120.00287 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.61521 * 103.94252 * 22 20 19 38 38 H 1.09001 * 109.61714 * 224.48131 * 22 20 19 39 39 H 1.08997 * 109.35577 * 289.11811 * 23 22 20 40 40 H 1.08999 * 109.61181 * 168.90160 * 23 22 20 41 41 H 1.09001 * 109.47847 * 169.82441 * 24 23 22 42 42 H 1.08996 * 109.48111 * 49.79237 * 24 23 22 43 43 H 1.09005 * 109.58559 * 282.21077 * 25 19 18 44 44 H 1.08997 * 109.59133 * 42.49964 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4478 1.1868 6 1 3.8198 2.0261 2.0206 7 6 5.3577 0.7098 1.3173 8 7 6.2443 1.0378 2.2330 9 14 5.6717 -0.7488 0.1933 10 1 6.5093 -0.3179 -0.9547 11 1 6.3786 -1.8135 0.9498 12 1 4.3767 -1.2747 -0.3085 13 6 4.2380 1.4368 -1.2679 14 6 4.4894 2.8556 -1.7092 15 8 4.0947 3.7804 -1.0311 16 7 5.1528 3.0967 -2.8573 17 6 5.3842 4.4053 -3.2647 18 7 5.0076 5.4596 -2.6186 19 6 5.3066 6.6427 -3.1412 20 6 5.9780 6.5548 -4.3026 21 16 6.2092 4.8552 -4.6920 22 6 6.4457 7.7292 -5.1291 23 6 5.7106 8.9860 -4.6553 24 6 5.7992 9.0736 -3.1288 25 6 4.9359 7.9743 -2.5055 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 7.0607 0.5219 2.3245 34 1 3.6492 0.9195 -2.0254 35 1 5.1903 0.9235 -1.1348 36 1 5.4681 2.3570 -3.3998 37 1 7.5191 7.8652 -4.9971 38 1 6.2237 7.5481 -6.1808 39 1 4.6649 8.9284 -4.9573 40 1 6.1718 9.8686 -5.0986 41 1 5.4398 10.0485 -2.7992 42 1 6.8354 8.9436 -2.8167 43 1 3.8829 8.1869 -2.6903 44 1 5.1166 7.9295 -1.4316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112697139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:28 Heat of formation + Delta-G solvation = 4.990473 kcal Electronic energy + Delta-G solvation = -25224.371614 eV Core-core repulsion = 21689.113295 eV Total energy + Delta-G solvation = -3535.258319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57979 -40.41989 -38.07502 -37.20870 -35.45558 -34.63677 -33.21816 -31.81311 -30.31691 -28.95966 -27.59695 -25.70682 -24.46758 -23.87389 -23.18762 -21.78467 -21.32432 -20.16594 -19.26987 -18.77322 -17.82591 -17.58225 -17.22906 -16.64712 -16.13620 -15.80559 -15.60377 -15.59293 -15.16058 -14.91133 -14.75558 -14.55702 -14.32860 -14.09723 -14.02826 -13.79138 -13.42793 -13.04486 -12.89993 -12.84461 -12.50566 -12.32361 -12.18297 -12.08490 -11.81238 -11.73453 -11.62411 -11.44571 -11.40928 -11.38875 -11.22850 -10.68724 -10.21794 -10.14411 -9.03246 -8.88709 -8.23548 -5.65224 -0.25671 -0.02247 0.64878 1.25019 1.41761 1.51326 1.58952 1.91828 2.07525 2.38771 2.93818 3.25632 3.28081 3.81843 3.92574 3.97857 4.05222 4.19739 4.23505 4.29097 4.29556 4.43278 4.48533 4.55432 4.62424 4.63935 4.72802 4.85348 4.90679 4.91565 5.00803 5.13945 5.15984 5.18870 5.21886 5.24972 5.40204 5.42981 5.43622 5.57356 5.85886 6.09133 6.14645 6.81547 6.95795 7.29021 7.52667 7.91876 8.96874 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003443 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.545636 B = 8129.753085 C = 8552.404073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.153 3.847 4 N -0.588 5.588 5 C -0.261 4.261 6 H 0.021 0.979 7 C -0.025 4.025 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.305 1.305 12 H -0.234 1.234 13 C 0.121 3.879 14 C 0.475 3.525 15 O -0.505 6.505 16 N -0.635 5.635 17 C 0.249 3.751 18 N -0.532 5.532 19 C 0.062 3.938 20 C -0.244 4.244 21 S 0.166 5.834 22 C -0.035 4.035 23 C -0.110 4.110 24 C -0.112 4.112 25 C -0.042 4.042 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.265 0.735 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.435 0.565 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 8.529 -22.477 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.028 3.972 4 N -0.307 5.307 5 C -0.391 4.391 6 H 0.038 0.962 7 C -0.222 4.222 8 N -0.593 5.593 9 Si 0.767 3.233 10 H -0.184 1.184 11 H -0.233 1.233 12 H -0.156 1.156 13 C -0.010 4.010 14 C 0.258 3.742 15 O -0.374 6.374 16 N -0.291 5.291 17 C -0.120 4.120 18 N -0.254 5.254 19 C -0.068 4.068 20 C -0.366 4.366 21 S 0.419 5.581 22 C -0.074 4.074 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.082 4.082 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.275 0.725 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.231 8.373 -22.111 23.676 hybrid contribution 0.394 -0.334 1.026 1.149 sum -0.837 8.040 -21.085 22.581 Atomic orbital electron populations 1.21663 0.94105 1.02147 1.01868 1.21982 0.96501 0.97643 1.01387 1.21032 0.81273 0.95554 0.99302 1.43839 1.02092 1.84410 1.00376 1.18512 1.06745 1.22910 0.90962 0.96163 1.26262 0.95920 1.00708 0.99264 1.70079 1.09119 1.40547 1.39536 0.85876 0.79592 0.79406 0.78436 1.18382 1.23349 1.15637 1.21613 0.99190 0.89932 0.90284 1.23641 0.76535 0.94973 0.79042 1.90720 1.47639 1.46906 1.52151 1.43672 1.56953 1.03527 1.24935 1.23847 1.01078 0.90044 0.97014 1.66062 1.26121 0.98328 1.34877 1.21137 0.99304 0.93016 0.93378 1.26284 1.10415 0.97944 1.01947 1.83189 1.54709 1.00188 1.20005 1.20302 1.00816 0.88556 0.97775 1.21597 1.01249 0.97284 0.94753 1.21574 0.99551 0.97604 0.96244 1.20466 1.00986 0.87842 0.98925 0.91574 0.93311 0.91821 0.91782 0.93943 0.95065 0.92756 0.92663 0.85633 0.90441 0.72494 0.89015 0.88515 0.91523 0.87909 0.88827 0.91753 0.90050 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.14 -4.63 6.26 30.59 0.19 -4.44 16 3 C 0.15 6.31 5.67 86.38 0.49 6.80 16 4 N -0.59 -28.52 1.56 -706.33 -1.10 -29.62 16 5 C -0.26 -15.63 9.90 84.03 0.83 -14.80 16 6 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 7 C -0.03 -1.49 5.29 84.86 0.45 -1.05 16 8 N -0.95 -61.22 13.97 21.65 0.30 -60.92 16 9 Si 0.94 42.90 25.10 68.60 1.72 44.63 16 10 H -0.26 -10.47 6.68 99.48 0.66 -9.80 16 11 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.23 -9.55 7.11 99.48 0.71 -8.84 16 13 C 0.12 4.89 5.00 85.63 0.43 5.31 16 14 C 0.48 20.60 7.86 87.66 0.69 21.29 16 15 O -0.51 -27.53 15.07 -3.03 -0.05 -27.57 16 16 N -0.64 -21.43 5.40 -313.95 -1.70 -23.12 16 17 C 0.25 8.68 8.02 179.31 1.44 10.12 16 18 N -0.53 -21.76 8.61 -187.25 -1.61 -23.37 16 19 C 0.06 2.00 6.77 42.01 0.28 2.28 16 20 C -0.24 -6.00 6.38 24.92 0.16 -5.84 16 21 S 0.17 3.92 23.20 -56.49 -1.31 2.61 16 22 C -0.03 -0.52 6.27 29.99 0.19 -0.33 16 23 C -0.11 -1.41 5.94 30.69 0.18 -1.23 16 24 C -0.11 -1.90 5.88 30.66 0.18 -1.72 16 25 C -0.04 -1.12 6.29 30.33 0.19 -0.93 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.03 1.40 8.04 -2.39 -0.02 1.39 16 32 H 0.05 2.04 8.07 -2.39 -0.02 2.03 16 33 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.13 3.78 8.07 -2.39 -0.02 3.76 16 35 H 0.08 3.24 3.37 -2.39 -0.01 3.24 16 36 H 0.43 10.23 8.82 -92.71 -0.82 9.41 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 0.90 8.11 -2.39 -0.02 0.88 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 43 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -85.74 367.77 2.82 -82.92 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.15 Total: 21.94 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.41 Total: 12.51 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -4.11 Total: -137.03 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.72 Total: 44.63 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.31 Total: 2.61 kcal Total: -85.74 2.82 -82.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112697139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.911 kcal (2) G-P(sol) polarization free energy of solvation -85.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds