Wall clock time and date at job start Tue Mar 31 2020 14:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 N 1.46498 * 109.47516 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99788 * 273.14878 * 4 3 2 6 6 H 1.08001 * 120.00104 * 139.88617 * 5 4 3 7 7 C 1.38816 * 120.00074 * 319.88975 * 5 4 3 8 8 N 1.31618 * 119.99690 * 356.33799 * 7 5 4 9 9 Si 1.86797 * 119.99905 * 176.34654 * 7 5 4 10 10 H 1.48492 * 109.47247 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47435 * 119.99929 * 9 7 5 12 12 H 1.48500 * 109.46680 * 239.99279 * 9 7 5 13 13 C 1.46493 * 120.00046 * 93.14309 * 4 3 2 14 14 C 1.50698 * 109.47298 * 90.00358 * 13 4 3 15 15 C 1.33447 * 122.71600 * 94.99674 * 14 13 4 16 16 S 1.76177 * 108.06077 * 179.75290 * 15 14 13 17 17 C 1.70964 * 90.34036 * 0.32566 * 16 15 14 18 18 N 1.39002 * 124.94496 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00137 * 186.91258 * 18 17 16 20 20 C 1.50700 * 120.00354 * 6.13323 * 19 18 17 21 21 O 1.21289 * 120.00201 * 186.14076 * 19 18 17 22 22 C 1.46497 * 119.99695 * 6.90843 * 18 17 16 23 23 C 1.53007 * 117.49929 * 196.84626 * 22 18 17 24 24 C 1.53005 * 117.49723 * 128.22528 * 22 18 17 25 25 N 1.29624 * 110.11172 * 359.67320 * 17 16 15 26 26 H 1.09000 * 109.47071 * 60.00049 * 1 2 3 27 27 H 1.08996 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46981 * 300.00135 * 1 2 3 29 29 H 1.09003 * 109.46981 * 239.99865 * 2 1 3 30 30 H 1.08996 * 109.47352 * 120.00377 * 2 1 3 31 31 H 1.09003 * 109.47169 * 59.99980 * 3 2 1 32 32 H 1.09000 * 109.46974 * 300.00011 * 3 2 1 33 33 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.47606 * 330.00406 * 13 4 3 35 35 H 1.09002 * 109.47297 * 210.00369 * 13 4 3 36 36 H 1.08002 * 125.97005 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.47540 * 273.39224 * 20 19 18 38 38 H 1.09000 * 109.47264 * 153.38348 * 20 19 18 39 39 H 1.09004 * 109.46767 * 33.39145 * 20 19 18 40 40 H 1.08998 * 115.55513 * 342.55922 * 22 18 17 41 41 H 1.08994 * 117.49401 * 0.02562 * 23 22 18 42 42 H 1.08998 * 117.49568 * 145.02008 * 23 22 18 43 43 H 1.08994 * 117.50326 * 214.97992 * 24 22 18 44 44 H 1.09002 * 117.49728 * 0.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.3772 1.1832 6 1 5.0797 0.7694 1.2595 7 6 3.7414 2.0921 2.2853 8 7 2.6997 2.8887 2.1731 9 14 4.6160 1.9236 3.9272 10 1 5.7485 0.9730 3.7895 11 1 5.1313 3.2499 4.3520 12 1 3.6631 1.4135 4.9455 13 6 4.2370 1.5122 -1.2677 14 6 4.4881 2.9548 -1.6240 15 6 5.6232 3.5863 -1.3181 16 16 5.5071 5.2392 -1.9166 17 6 3.9363 4.9237 -2.5132 18 7 3.1357 5.8471 -3.1753 19 6 1.8604 5.5366 -3.4810 20 6 1.2594 4.2465 -2.9857 21 8 1.1963 6.2955 -4.1550 22 6 3.6783 7.1580 -3.5407 23 6 2.6800 8.2610 -3.8985 24 6 3.5226 7.6065 -4.9952 25 7 3.6031 3.6961 -2.2638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.3864 3.3886 2.9431 34 1 3.6476 1.0410 -2.0543 35 1 5.1895 0.9920 -1.1662 36 1 6.4675 3.1575 -0.7986 37 1 1.4867 3.4459 -3.6896 38 1 0.1786 4.3587 -2.8995 39 1 1.6782 4.0018 -2.0095 40 1 4.5882 7.4525 -3.0179 41 1 1.6197 8.0113 -3.8616 42 1 2.9331 9.2814 -3.6108 43 1 4.3299 8.1964 -5.4291 44 1 3.0161 6.9264 -5.6801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114715449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:24 Heat of formation + Delta-G solvation = 80.389437 kcal Electronic energy + Delta-G solvation = -26046.732604 eV Core-core repulsion = 22514.743829 eV Total energy + Delta-G solvation = -3531.988775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82071 -39.07589 -36.64940 -36.02946 -34.40711 -32.38313 -31.38313 -29.42790 -28.99965 -26.21158 -25.57606 -24.35617 -23.21688 -22.49345 -21.99881 -20.30594 -19.44321 -18.99028 -18.11451 -16.87004 -16.16455 -16.00918 -15.74447 -15.03550 -14.67612 -14.35933 -14.05785 -13.91975 -13.78813 -13.51942 -13.17681 -13.09026 -12.82028 -12.37754 -12.15393 -12.10175 -11.86672 -11.75446 -11.23536 -11.18383 -11.01393 -10.96588 -10.89186 -10.62262 -10.58914 -10.32344 -9.94728 -9.88386 -9.70340 -9.52638 -9.40495 -9.10220 -8.74911 -8.60904 -7.66496 -6.64330 -5.75592 -3.52191 1.17319 1.45044 2.15691 2.55524 2.61422 3.28067 3.36567 3.38175 3.42817 3.79515 4.38316 4.39894 4.66357 4.89180 4.89839 5.22960 5.31657 5.38329 5.55371 5.59112 5.72981 5.84742 5.92221 5.92846 5.94463 6.01348 6.05269 6.12381 6.29575 6.34586 6.46946 6.53288 6.59371 6.64828 6.70236 6.72264 6.96786 7.04429 7.25296 7.37915 7.66666 7.95558 8.00536 8.32145 8.54130 9.15389 9.71888 10.29241 11.12846 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.004534 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.756127 B = 6174.141088 C = 7150.413910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.569 5.569 5 C -0.253 4.253 6 H 0.064 0.936 7 C 0.016 3.984 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.210 3.790 14 C 0.098 3.902 15 C -0.256 4.256 16 S 0.087 5.913 17 C 0.260 3.740 18 N -0.494 5.494 19 C 0.533 3.467 20 C -0.166 4.166 21 O -0.530 6.530 22 C 0.054 3.946 23 C -0.180 4.180 24 C -0.175 4.175 25 N -0.484 5.484 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.025 0.975 33 H 0.255 0.745 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 4.919 -9.986 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.004 3.996 4 N -0.286 5.286 5 C -0.384 4.384 6 H 0.081 0.919 7 C -0.184 4.184 8 N -0.528 5.528 9 Si 0.729 3.271 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.080 3.920 14 C -0.034 4.034 15 C -0.396 4.396 16 S 0.336 5.664 17 C -0.107 4.107 18 N -0.221 5.221 19 C 0.324 3.676 20 C -0.225 4.225 21 O -0.406 6.406 22 C -0.050 4.050 23 C -0.217 4.217 24 C -0.214 4.214 25 N -0.207 5.207 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.190 0.810 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.334 6.110 -10.385 12.274 hybrid contribution 0.410 -0.700 1.329 1.557 sum 2.745 5.411 -9.056 10.900 Atomic orbital electron populations 1.21677 0.97667 0.99735 1.01051 1.22024 0.93545 1.01743 1.00242 1.21483 0.82622 0.92471 1.03071 1.43982 1.01523 1.82835 1.00282 1.19176 1.09757 1.21673 0.87764 0.91879 1.25411 0.97817 0.95814 0.99352 1.69591 1.24923 1.28687 1.29626 0.86258 0.79467 0.77480 0.83854 1.20024 1.21519 1.21465 1.19815 0.96974 0.85464 0.89777 1.21596 0.86958 1.01221 0.93653 1.26504 1.05509 0.93881 1.13742 1.83458 1.12259 1.16121 1.54547 1.23369 0.95185 0.91389 1.00762 1.44383 1.11005 1.12567 1.54195 1.21391 0.79367 0.88983 0.77873 1.22178 1.00728 0.93450 1.06105 1.90538 1.60529 1.51616 1.37960 1.21851 1.00536 0.82826 0.99736 1.23852 1.01201 0.95563 1.01076 1.23288 1.02974 1.03658 0.91465 1.66520 1.33088 1.01728 1.19368 0.93723 0.94369 0.93099 0.94530 0.92677 0.86477 0.95701 0.93417 0.92716 0.91819 0.80956 0.88524 0.90215 0.86425 0.84924 0.84444 0.88557 0.88042 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.06 16 2 C -0.14 -2.68 6.25 -26.73 -0.17 -2.85 16 3 C 0.13 2.90 5.33 -4.04 -0.02 2.88 16 4 N -0.57 -13.07 2.43 -174.61 -0.42 -13.50 16 5 C -0.25 -6.36 9.51 -15.06 -0.14 -6.50 16 6 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 7 C 0.02 0.42 5.33 -17.43 -0.09 0.33 16 8 N -0.89 -24.09 10.65 55.49 0.59 -23.50 16 9 Si 0.90 20.57 29.56 -169.99 -5.02 15.55 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.21 4.12 6.09 -5.20 -0.03 4.09 16 14 C 0.10 1.89 6.32 -84.20 -0.53 1.35 16 15 C -0.26 -4.50 11.09 29.06 0.32 -4.18 16 16 S 0.09 1.34 21.70 -107.50 -2.33 -1.00 16 17 C 0.26 4.46 7.50 -87.35 -0.66 3.80 16 18 N -0.49 -7.87 3.04 -110.29 -0.34 -8.21 16 19 C 0.53 8.91 7.54 -10.99 -0.08 8.83 16 20 C -0.17 -2.67 8.67 36.01 0.31 -2.35 16 21 O -0.53 -9.26 12.83 5.55 0.07 -9.18 16 22 C 0.05 0.71 6.36 -67.93 -0.43 0.28 16 23 C -0.18 -2.20 9.63 -26.72 -0.26 -2.46 16 24 C -0.18 -2.03 9.87 -26.73 -0.26 -2.30 16 25 N -0.48 -9.04 6.80 -11.28 -0.08 -9.12 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.12 3.05 4.96 -51.93 -0.26 2.79 16 32 H 0.02 0.55 7.79 -51.93 -0.40 0.14 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.06 1.16 8.00 -51.93 -0.42 0.75 16 36 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 37 H 0.10 1.48 8.12 -51.93 -0.42 1.05 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.12 2.22 5.63 -51.93 -0.29 1.92 16 40 H 0.13 1.54 7.04 -51.93 -0.37 1.18 16 41 H 0.14 2.03 5.26 -52.02 -0.27 1.75 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.33 7.55 -51.93 -0.39 0.94 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -27.85 369.48 -10.23 -38.09 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.59 Total: 6.45 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.68 Total: -1.15 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.25 Total: -54.32 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.33 Total: -1.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.85 -10.23 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114715449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.476 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds