Wall clock time and date at job start Tue Mar 31 2020 14:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 N 1.46498 * 109.47516 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99788 * 273.14878 * 4 3 2 6 6 H 1.08001 * 120.00104 * 139.88617 * 5 4 3 7 7 C 1.38816 * 120.00074 * 319.88975 * 5 4 3 8 8 N 1.31618 * 119.99690 * 356.33799 * 7 5 4 9 9 Si 1.86797 * 119.99905 * 176.34654 * 7 5 4 10 10 H 1.48492 * 109.47247 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47435 * 119.99929 * 9 7 5 12 12 H 1.48500 * 109.46680 * 239.99279 * 9 7 5 13 13 C 1.46493 * 120.00046 * 93.14309 * 4 3 2 14 14 C 1.50698 * 109.47298 * 90.00358 * 13 4 3 15 15 C 1.33447 * 122.71600 * 94.99674 * 14 13 4 16 16 S 1.76177 * 108.06077 * 179.75290 * 15 14 13 17 17 C 1.70964 * 90.34036 * 0.32566 * 16 15 14 18 18 N 1.39002 * 124.94496 * 179.97438 * 17 16 15 19 19 C 1.34771 * 120.00137 * 186.91258 * 18 17 16 20 20 C 1.50700 * 120.00354 * 6.13323 * 19 18 17 21 21 O 1.21289 * 120.00201 * 186.14076 * 19 18 17 22 22 C 1.46497 * 119.99695 * 6.90843 * 18 17 16 23 23 C 1.53007 * 117.49929 * 196.84626 * 22 18 17 24 24 C 1.53005 * 117.49723 * 128.22528 * 22 18 17 25 25 N 1.29624 * 110.11172 * 359.67320 * 17 16 15 26 26 H 1.09000 * 109.47071 * 60.00049 * 1 2 3 27 27 H 1.08996 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46981 * 300.00135 * 1 2 3 29 29 H 1.09003 * 109.46981 * 239.99865 * 2 1 3 30 30 H 1.08996 * 109.47352 * 120.00377 * 2 1 3 31 31 H 1.09003 * 109.47169 * 59.99980 * 3 2 1 32 32 H 1.09000 * 109.46974 * 300.00011 * 3 2 1 33 33 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.47606 * 330.00406 * 13 4 3 35 35 H 1.09002 * 109.47297 * 210.00369 * 13 4 3 36 36 H 1.08002 * 125.97005 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.47540 * 273.39224 * 20 19 18 38 38 H 1.09000 * 109.47264 * 153.38348 * 20 19 18 39 39 H 1.09004 * 109.46767 * 33.39145 * 20 19 18 40 40 H 1.08998 * 115.55513 * 342.55922 * 22 18 17 41 41 H 1.08994 * 117.49401 * 0.02562 * 23 22 18 42 42 H 1.08998 * 117.49568 * 145.02008 * 23 22 18 43 43 H 1.08994 * 117.50326 * 214.97992 * 24 22 18 44 44 H 1.09002 * 117.49728 * 0.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.3772 1.1832 6 1 5.0797 0.7694 1.2595 7 6 3.7414 2.0921 2.2853 8 7 2.6997 2.8887 2.1731 9 14 4.6160 1.9236 3.9272 10 1 5.7485 0.9730 3.7895 11 1 5.1313 3.2499 4.3520 12 1 3.6631 1.4135 4.9455 13 6 4.2370 1.5122 -1.2677 14 6 4.4881 2.9548 -1.6240 15 6 5.6232 3.5863 -1.3181 16 16 5.5071 5.2392 -1.9166 17 6 3.9363 4.9237 -2.5132 18 7 3.1357 5.8471 -3.1753 19 6 1.8604 5.5366 -3.4810 20 6 1.2594 4.2465 -2.9857 21 8 1.1963 6.2955 -4.1550 22 6 3.6783 7.1580 -3.5407 23 6 2.6800 8.2610 -3.8985 24 6 3.5226 7.6065 -4.9952 25 7 3.6031 3.6961 -2.2638 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.3864 3.3886 2.9431 34 1 3.6476 1.0410 -2.0543 35 1 5.1895 0.9920 -1.1662 36 1 6.4675 3.1575 -0.7986 37 1 1.4867 3.4459 -3.6896 38 1 0.1786 4.3587 -2.8995 39 1 1.6782 4.0018 -2.0095 40 1 4.5882 7.4525 -3.0179 41 1 1.6197 8.0113 -3.8616 42 1 2.9331 9.2814 -3.6108 43 1 4.3299 8.1964 -5.4291 44 1 3.0161 6.9264 -5.6801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114715449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:23 Heat of formation + Delta-G solvation = 68.215950 kcal Electronic energy + Delta-G solvation = -26047.260486 eV Core-core repulsion = 22514.743829 eV Total energy + Delta-G solvation = -3532.516657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07067 -40.44666 -37.90468 -37.61109 -35.66121 -34.06277 -33.09562 -30.72077 -30.46790 -27.80243 -27.28803 -25.73379 -24.43731 -23.58887 -23.42122 -21.86654 -20.87339 -20.35166 -19.36991 -18.60842 -17.59317 -17.26811 -17.02371 -16.81326 -15.86679 -15.69010 -15.63877 -15.48257 -15.09513 -14.98110 -14.66907 -14.47693 -14.15522 -13.88745 -13.53911 -13.35290 -13.30620 -12.97443 -12.91709 -12.82562 -12.61300 -12.34206 -12.26122 -12.23421 -12.02087 -11.62867 -11.59290 -11.51702 -11.19458 -10.92029 -10.75754 -10.54817 -10.42974 -10.02497 -8.99052 -8.48698 -7.65369 -5.46535 -0.17824 0.14702 0.80519 1.25195 1.41731 1.46919 1.50648 1.58266 2.02029 2.53841 2.77651 3.16140 3.37011 3.63570 3.84941 3.89434 3.93800 3.96231 4.29720 4.42540 4.48977 4.50719 4.58994 4.61008 4.64503 4.72151 4.79684 4.88310 4.98592 5.01292 5.02721 5.15849 5.18321 5.21748 5.26008 5.37994 5.40265 5.44898 5.66369 5.72766 5.95060 6.15226 6.62528 6.64599 6.97647 7.26236 7.90439 8.43171 9.19277 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.004534 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.756127 B = 6174.141088 C = 7150.413910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.134 3.866 4 N -0.583 5.583 5 C -0.251 4.251 6 H 0.064 0.936 7 C -0.031 4.031 8 N -0.915 5.915 9 Si 0.954 3.046 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.212 3.788 14 C 0.078 3.922 15 C -0.269 4.269 16 S 0.161 5.839 17 C 0.242 3.758 18 N -0.495 5.495 19 C 0.527 3.473 20 C -0.157 4.157 21 O -0.540 6.540 22 C 0.033 3.967 23 C -0.179 4.179 24 C -0.160 4.160 25 N -0.503 5.503 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.022 0.978 33 H 0.247 0.753 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.184 0.816 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 5.637 -11.009 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.008 3.992 4 N -0.302 5.302 5 C -0.382 4.382 6 H 0.082 0.918 7 C -0.228 4.228 8 N -0.560 5.560 9 Si 0.783 3.217 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.223 1.223 13 C 0.083 3.917 14 C -0.054 4.054 15 C -0.409 4.409 16 S 0.411 5.589 17 C -0.125 4.125 18 N -0.222 5.222 19 C 0.318 3.682 20 C -0.216 4.216 21 O -0.418 6.418 22 C -0.070 4.070 23 C -0.216 4.216 24 C -0.198 4.198 25 N -0.226 5.226 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.201 0.799 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.735 6.835 -11.437 13.837 hybrid contribution 0.033 -0.870 1.515 1.747 sum 3.768 5.965 -9.922 12.174 Atomic orbital electron populations 1.21610 0.95451 1.01292 1.01069 1.21879 0.95496 0.99662 0.99593 1.21279 0.82904 0.93728 1.01267 1.44059 1.01682 1.83589 1.00865 1.19366 1.09266 1.20816 0.88763 0.91803 1.25964 0.98593 0.96240 1.01969 1.69797 1.26409 1.30123 1.29688 0.85412 0.78625 0.77045 0.80665 1.18819 1.22196 1.22256 1.19777 0.97184 0.86346 0.88423 1.21426 0.87932 1.01022 0.95065 1.26806 1.05452 0.95807 1.12867 1.83111 1.09826 1.13274 1.52716 1.23651 0.96459 0.91450 1.00896 1.44488 1.10707 1.13279 1.53713 1.21442 0.79823 0.88968 0.77931 1.22062 1.01146 0.93659 1.04698 1.90551 1.60943 1.51818 1.38500 1.22237 1.01489 0.81833 1.01407 1.23826 0.99614 0.96656 1.01505 1.23342 1.03299 1.02932 0.90272 1.66491 1.33490 1.02617 1.20022 0.92595 0.91996 0.94202 0.93473 0.94796 0.89697 0.95944 0.94325 0.92082 0.90693 0.79872 0.87975 0.89293 0.88934 0.83159 0.87082 0.85694 0.84705 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.91 71.98 0.71 -3.79 16 2 C -0.13 -5.01 6.25 30.59 0.19 -4.81 16 3 C 0.13 6.14 5.33 86.38 0.46 6.60 16 4 N -0.58 -27.00 2.43 -706.36 -1.72 -28.72 16 5 C -0.25 -12.66 9.51 84.03 0.80 -11.86 16 6 H 0.06 3.15 7.83 -2.91 -0.02 3.13 16 7 C -0.03 -1.62 5.33 84.86 0.45 -1.17 16 8 N -0.92 -51.13 10.65 21.65 0.23 -50.90 16 9 Si 0.95 42.70 29.56 68.60 2.03 44.73 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 13 C 0.21 8.24 6.09 85.63 0.52 8.76 16 14 C 0.08 2.96 6.32 41.45 0.26 3.22 16 15 C -0.27 -9.07 11.09 66.73 0.74 -8.33 16 16 S 0.16 4.57 21.70 -56.49 -1.23 3.34 16 17 C 0.24 8.05 7.50 179.20 1.34 9.39 16 18 N -0.49 -15.30 3.04 -621.23 -1.89 -17.19 16 19 C 0.53 17.56 7.54 87.66 0.66 18.22 16 20 C -0.16 -5.10 8.67 71.24 0.62 -4.48 16 21 O -0.54 -18.82 12.83 -3.06 -0.04 -18.86 16 22 C 0.03 0.79 6.36 45.00 0.29 1.08 16 23 C -0.18 -4.03 9.63 30.60 0.29 -3.74 16 24 C -0.16 -3.32 9.87 30.60 0.30 -3.02 16 25 N -0.50 -18.64 6.80 -189.59 -1.29 -19.93 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 4.58 4.96 -2.39 -0.01 4.57 16 32 H 0.02 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.06 2.24 8.07 -2.38 -0.02 2.22 16 35 H 0.07 2.68 8.00 -2.39 -0.02 2.66 16 36 H 0.18 5.64 8.06 -2.91 -0.02 5.62 16 37 H 0.10 3.14 8.12 -2.39 -0.02 3.12 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 3.57 5.63 -2.38 -0.01 3.56 16 40 H 0.15 3.02 7.04 -2.39 -0.02 3.00 16 41 H 0.11 3.20 5.26 -3.83 -0.02 3.18 16 42 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.05 7.55 -2.39 -0.02 2.03 16 Total: -1.00 -60.71 369.48 4.73 -55.98 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.99 Total: 25.49 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 7.65 Total: 6.07 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -4.67 Total: -116.74 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.23 Total: 3.34 kcal Total: -60.71 4.73 -55.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114715449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.194 kcal (2) G-P(sol) polarization free energy of solvation -60.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds