Wall clock time and date at job start Tue Mar 31 2020 13:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00422 * 2 1 4 4 N 1.46496 * 109.47206 * 124.99638 * 3 2 1 5 5 C 1.46497 * 120.00578 * 270.00432 * 4 3 2 6 6 C 1.50700 * 109.47235 * 270.00202 * 5 4 3 7 7 H 1.08003 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99589 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00357 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47270 * 89.99591 * 10 8 6 12 12 H 1.48496 * 109.47239 * 209.99788 * 10 8 6 13 13 H 1.48507 * 109.46928 * 329.99398 * 10 8 6 14 14 C 1.34777 * 119.99702 * 90.00249 * 4 3 2 15 15 O 1.21586 * 120.00075 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00142 * 0.02562 * 14 4 3 17 17 C 1.39000 * 120.00530 * 179.97438 * 16 14 4 18 18 N 1.29624 * 124.95194 * 180.27508 * 17 16 14 19 19 C 1.32014 * 116.90998 * 180.22876 * 18 17 16 20 20 C 1.50706 * 122.71645 * 179.75350 * 19 18 17 21 21 C 1.52996 * 109.47010 * 254.70957 * 20 19 18 22 22 C 1.52999 * 109.46887 * 14.70702 * 20 19 18 23 23 C 1.52998 * 109.47419 * 134.70707 * 20 19 18 24 24 C 1.33413 * 114.57294 * 359.48204 * 19 18 17 25 25 S 1.70975 * 124.94207 * 359.97126 * 17 16 14 26 26 H 1.07998 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00311 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99644 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46561 * 5.00282 * 3 2 1 30 30 H 1.08999 * 109.47564 * 245.00437 * 3 2 1 31 31 H 1.09001 * 109.46849 * 30.00040 * 5 4 3 32 32 H 1.09003 * 109.47321 * 149.99733 * 5 4 3 33 33 H 0.97003 * 119.99848 * 179.97438 * 9 8 6 34 34 H 0.96998 * 119.99817 * 359.97438 * 16 14 4 35 35 H 1.09003 * 109.47073 * 59.99910 * 21 20 19 36 36 H 1.09002 * 109.46988 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47317 * 299.99934 * 21 20 19 38 38 H 1.09004 * 109.47289 * 60.00138 * 22 20 19 39 39 H 1.09002 * 109.47021 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.47398 * 300.00214 * 22 20 19 41 41 H 1.09000 * 109.46725 * 60.00177 * 23 20 19 42 42 H 1.08992 * 109.47315 * 180.02562 * 23 20 19 43 43 H 1.09005 * 109.47176 * 300.00774 * 23 20 19 44 44 H 1.08001 * 125.96927 * 180.26972 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6368 8 6 2.5185 4.0665 3.6083 9 7 2.7681 5.3568 3.6570 10 14 1.7240 3.2132 5.0677 11 1 2.7800 2.7229 5.9895 12 1 0.8472 4.1731 5.7853 13 1 0.9131 2.0650 4.5885 14 6 4.2497 0.8660 0.9824 15 8 5.0219 0.8886 1.9213 16 7 4.6499 0.3761 -0.2077 17 6 5.9454 -0.1038 -0.3616 18 7 6.4316 -0.5897 -1.4606 19 6 7.6841 -1.0054 -1.4273 20 6 8.3780 -1.5973 -2.6271 21 6 8.4983 -3.1123 -2.4508 22 6 7.5655 -1.2935 -3.8874 23 6 9.7746 -0.9869 -2.7612 24 6 8.2878 -0.8540 -0.2473 25 16 7.1318 -0.1324 0.8692 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4888 1.6965 2.5459 32 1 3.0990 1.3601 3.2260 33 1 2.5385 5.8656 4.4503 34 1 4.0340 0.3584 -0.9568 35 1 7.5034 -3.5471 -2.3553 36 1 8.9998 -3.5404 -3.3188 37 1 9.0771 -3.3287 -1.5529 38 1 7.4797 -0.2141 -4.0131 39 1 8.0671 -1.7219 -4.7552 40 1 6.5705 -1.7283 -3.7920 41 1 10.3533 -1.2034 -1.8633 42 1 10.2762 -1.4146 -3.6292 43 1 9.6888 0.0925 -2.8867 44 1 9.3072 -1.1263 -0.0167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493909451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:07 Heat of formation + Delta-G solvation = 43.170065 kcal Electronic energy + Delta-G solvation = -25090.239764 eV Core-core repulsion = 21556.637035 eV Total energy + Delta-G solvation = -3533.602728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49551 -39.72829 -36.57089 -36.01459 -34.29112 -33.25740 -32.24616 -29.40911 -28.31335 -27.37503 -27.15402 -25.85869 -24.59815 -22.81572 -21.28692 -20.65437 -20.04394 -18.50516 -17.76009 -17.26406 -17.00703 -16.37523 -15.57909 -15.49276 -15.06264 -14.73086 -14.57796 -14.19298 -13.92059 -13.83089 -13.40579 -13.18501 -12.96081 -12.44537 -12.38977 -12.22353 -12.12318 -11.93388 -11.75620 -11.74171 -11.41471 -11.12410 -11.07272 -10.94943 -10.74393 -10.61959 -10.50300 -10.23736 -9.70704 -9.55776 -9.45223 -9.39629 -8.90299 -8.65584 -8.23432 -7.75922 -6.15219 -4.15394 1.07180 1.45775 2.12715 2.26578 2.70683 2.88131 3.25026 3.30763 3.33219 3.54943 4.07456 4.33397 4.43942 4.76113 4.91954 4.98213 5.09253 5.16956 5.18064 5.32560 5.38400 5.48278 5.50473 5.61889 5.66893 5.78193 5.80927 5.83276 5.94155 5.95521 6.00667 6.13556 6.20992 6.24919 6.34260 6.51915 6.59911 6.70054 6.73594 6.97937 7.16789 7.50329 7.90923 8.15552 8.36939 8.71845 8.87896 9.43538 10.97885 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003365 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.238592 B = 8318.850651 C = 9271.536949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 C 0.133 3.867 4 N -0.586 5.586 5 C 0.232 3.768 6 C -0.534 4.534 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.699 3.301 15 O -0.549 6.549 16 N -0.642 5.642 17 C 0.275 3.725 18 N -0.523 5.523 19 C 0.104 3.896 20 C 0.006 3.994 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.336 4.336 25 S 0.250 5.750 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -15.305 -12.682 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.009 3.991 4 N -0.319 5.319 5 C 0.111 3.889 6 C -0.573 4.573 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.532 5.532 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.400 3.600 15 O -0.425 6.425 16 N -0.296 5.296 17 C -0.093 4.093 18 N -0.247 5.247 19 C -0.029 4.029 20 C 0.004 3.996 21 C -0.193 4.193 22 C -0.185 4.185 23 C -0.196 4.196 24 C -0.477 4.477 25 S 0.501 5.499 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.085 -14.713 -11.168 19.448 hybrid contribution -0.469 -0.574 -0.386 0.836 sum 5.617 -15.288 -11.554 19.969 Atomic orbital electron populations 1.23872 0.95734 1.02058 0.99479 1.23418 0.96609 0.98762 1.00840 1.20661 0.93262 0.96182 0.88957 1.47175 1.08357 1.62196 1.14149 1.19715 0.95089 0.95186 0.78865 1.21300 1.41676 0.90966 1.03335 0.90625 1.24823 0.95168 0.94711 0.98070 1.69891 1.47357 1.06610 1.29332 0.86880 0.79921 0.79698 0.83384 1.19767 1.20990 1.18989 1.15813 0.83804 0.78920 0.81484 1.90840 1.51922 1.61478 1.38266 1.42174 1.09820 1.63086 1.14485 1.23152 0.91722 0.99665 0.94807 1.66094 1.13718 1.19524 1.25386 1.19502 0.88370 0.99917 0.95126 1.19113 0.94283 0.94803 0.91450 1.21861 1.02016 0.93759 1.01672 1.21683 0.99951 1.01873 0.94960 1.21902 0.94843 1.01038 1.01768 1.27162 1.06662 1.14810 0.99084 1.85242 0.99003 1.55548 1.10138 0.88009 0.88514 0.87602 0.88226 0.90890 0.94568 0.94134 0.92436 0.74624 0.92502 0.92201 0.92488 0.92588 0.93151 0.91898 0.92364 0.92155 0.92381 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 14.32 29.02 0.42 -1.55 16 2 C -0.18 -2.24 9.85 -36.03 -0.35 -2.60 16 3 C 0.13 1.97 5.61 -5.20 -0.03 1.94 16 4 N -0.59 -11.44 2.44 -182.19 -0.44 -11.89 16 5 C 0.23 5.37 4.23 -5.20 -0.02 5.35 16 6 C -0.53 -14.75 9.94 -34.44 -0.34 -15.09 16 7 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 10 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.70 13.94 8.24 -86.92 -0.72 13.22 16 15 O -0.55 -12.69 13.39 5.29 0.07 -12.61 16 16 N -0.64 -10.58 5.27 -17.47 -0.09 -10.67 16 17 C 0.27 4.60 8.19 -87.35 -0.72 3.88 16 18 N -0.52 -8.12 9.60 -11.27 -0.11 -8.23 16 19 C 0.10 1.42 5.41 -84.20 -0.46 0.97 16 20 C 0.01 0.07 0.90 -155.66 -0.14 -0.07 16 21 C -0.14 -1.24 8.43 37.16 0.31 -0.93 16 22 C -0.13 -1.33 7.91 37.16 0.29 -1.04 16 23 C -0.14 -1.24 8.13 37.16 0.30 -0.94 16 24 C -0.34 -4.49 10.38 29.05 0.30 -4.19 16 25 S 0.25 4.07 20.21 -107.50 -2.17 1.90 16 26 H 0.10 1.12 7.84 -52.49 -0.41 0.70 16 27 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.10 1.52 7.72 -51.93 -0.40 1.12 16 30 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 31 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 32 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.41 5.73 6.55 -40.82 -0.27 5.46 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.72 7.97 -51.93 -0.41 0.30 16 41 H 0.06 0.48 7.14 -51.93 -0.37 0.11 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.17 1.79 7.30 -52.49 -0.38 1.41 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.04 374.44 -8.95 -40.98 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.70 Total: 3.83 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.25 Total: 0.99 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.13 Total: -56.93 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.17 Total: 1.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.04 -8.95 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493909451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.153 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds