Wall clock time and date at job start Tue Mar 31 2020 13:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00422 * 2 1 4 4 N 1.46496 * 109.47206 * 124.99638 * 3 2 1 5 5 C 1.46497 * 120.00578 * 270.00432 * 4 3 2 6 6 C 1.50700 * 109.47235 * 270.00202 * 5 4 3 7 7 H 1.08003 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99589 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00357 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47270 * 89.99591 * 10 8 6 12 12 H 1.48496 * 109.47239 * 209.99788 * 10 8 6 13 13 H 1.48507 * 109.46928 * 329.99398 * 10 8 6 14 14 C 1.34777 * 119.99702 * 90.00249 * 4 3 2 15 15 O 1.21586 * 120.00075 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00142 * 0.02562 * 14 4 3 17 17 C 1.39000 * 120.00530 * 179.97438 * 16 14 4 18 18 N 1.29624 * 124.95194 * 180.27508 * 17 16 14 19 19 C 1.32014 * 116.90998 * 180.22876 * 18 17 16 20 20 C 1.50706 * 122.71645 * 179.75350 * 19 18 17 21 21 C 1.52996 * 109.47010 * 254.70957 * 20 19 18 22 22 C 1.52999 * 109.46887 * 14.70702 * 20 19 18 23 23 C 1.52998 * 109.47419 * 134.70707 * 20 19 18 24 24 C 1.33413 * 114.57294 * 359.48204 * 19 18 17 25 25 S 1.70975 * 124.94207 * 359.97126 * 17 16 14 26 26 H 1.07998 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00311 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99644 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46561 * 5.00282 * 3 2 1 30 30 H 1.08999 * 109.47564 * 245.00437 * 3 2 1 31 31 H 1.09001 * 109.46849 * 30.00040 * 5 4 3 32 32 H 1.09003 * 109.47321 * 149.99733 * 5 4 3 33 33 H 0.97003 * 119.99848 * 179.97438 * 9 8 6 34 34 H 0.96998 * 119.99817 * 359.97438 * 16 14 4 35 35 H 1.09003 * 109.47073 * 59.99910 * 21 20 19 36 36 H 1.09002 * 109.46988 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47317 * 299.99934 * 21 20 19 38 38 H 1.09004 * 109.47289 * 60.00138 * 22 20 19 39 39 H 1.09002 * 109.47021 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.47398 * 300.00214 * 22 20 19 41 41 H 1.09000 * 109.46725 * 60.00177 * 23 20 19 42 42 H 1.08992 * 109.47315 * 180.02562 * 23 20 19 43 43 H 1.09005 * 109.47176 * 300.00774 * 23 20 19 44 44 H 1.08001 * 125.96927 * 180.26972 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3041 3.8368 1.6368 8 6 2.5185 4.0665 3.6083 9 7 2.7681 5.3568 3.6570 10 14 1.7240 3.2132 5.0677 11 1 2.7800 2.7229 5.9895 12 1 0.8472 4.1731 5.7853 13 1 0.9131 2.0650 4.5885 14 6 4.2497 0.8660 0.9824 15 8 5.0219 0.8886 1.9213 16 7 4.6499 0.3761 -0.2077 17 6 5.9454 -0.1038 -0.3616 18 7 6.4316 -0.5897 -1.4606 19 6 7.6841 -1.0054 -1.4273 20 6 8.3780 -1.5973 -2.6271 21 6 8.4983 -3.1123 -2.4508 22 6 7.5655 -1.2935 -3.8874 23 6 9.7746 -0.9869 -2.7612 24 6 8.2878 -0.8540 -0.2473 25 16 7.1318 -0.1324 0.8692 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4888 1.6965 2.5459 32 1 3.0990 1.3601 3.2260 33 1 2.5385 5.8656 4.4503 34 1 4.0340 0.3584 -0.9568 35 1 7.5034 -3.5471 -2.3553 36 1 8.9998 -3.5404 -3.3188 37 1 9.0771 -3.3287 -1.5529 38 1 7.4797 -0.2141 -4.0131 39 1 8.0671 -1.7219 -4.7552 40 1 6.5705 -1.7283 -3.7920 41 1 10.3533 -1.2034 -1.8633 42 1 10.2762 -1.4146 -3.6292 43 1 9.6888 0.0925 -2.8867 44 1 9.3072 -1.1263 -0.0167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493909451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:06 Heat of formation + Delta-G solvation = 24.439196 kcal Electronic energy + Delta-G solvation = -25091.051995 eV Core-core repulsion = 21556.637035 eV Total energy + Delta-G solvation = -3534.414959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88877 -40.94826 -37.79290 -37.26317 -35.67141 -34.88184 -33.88477 -30.76911 -29.89331 -28.07906 -28.04749 -27.13055 -25.91598 -24.49952 -22.47307 -22.09115 -21.09962 -19.72835 -19.11084 -19.04208 -18.52468 -17.65066 -17.02780 -16.84134 -16.23124 -16.00740 -15.90640 -15.69035 -15.12090 -14.73517 -14.66810 -14.45137 -14.29233 -14.10912 -13.57285 -13.32763 -13.18673 -13.11090 -12.95572 -12.86902 -12.53767 -12.50693 -12.33188 -12.10055 -11.98084 -11.89892 -11.74514 -11.70420 -11.62204 -11.05427 -10.82173 -10.68021 -10.40894 -10.16725 -9.76687 -9.07076 -8.32980 -6.38905 -0.15969 0.21967 0.91870 1.17884 1.35809 1.39226 1.45024 1.47373 1.63477 2.13191 2.31943 2.72064 3.02057 3.40296 3.92378 3.95112 4.07923 4.13052 4.20497 4.28000 4.45542 4.51139 4.63181 4.75992 4.79790 4.82913 4.84264 4.88650 4.95050 5.01165 5.04012 5.07273 5.14936 5.23109 5.28864 5.41072 5.43708 5.47616 5.49966 5.63131 5.67946 5.82694 6.22235 6.54639 6.62741 6.84703 7.14843 7.28285 8.83833 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003365 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.238592 B = 8318.850651 C = 9271.536949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.191 4.191 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.244 3.756 6 C -0.538 4.538 7 H 0.029 0.971 8 C 0.015 3.985 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.235 1.235 14 C 0.697 3.303 15 O -0.588 6.588 16 N -0.628 5.628 17 C 0.254 3.746 18 N -0.520 5.520 19 C 0.090 3.910 20 C 0.005 3.995 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.313 4.313 25 S 0.203 5.797 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.269 0.731 34 H 0.426 0.574 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -17.955 -13.658 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.210 4.210 3 C 0.007 3.993 4 N -0.324 5.324 5 C 0.122 3.878 6 C -0.576 4.576 7 H 0.048 0.952 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.767 3.233 11 H -0.201 1.201 12 H -0.202 1.202 13 H -0.158 1.158 14 C 0.397 3.603 15 O -0.467 6.467 16 N -0.283 5.283 17 C -0.114 4.114 18 N -0.243 5.243 19 C -0.042 4.042 20 C 0.002 3.998 21 C -0.189 4.189 22 C -0.182 4.182 23 C -0.193 4.193 24 C -0.453 4.453 25 S 0.453 5.547 26 H 0.123 0.877 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.923 -17.399 -12.229 22.076 hybrid contribution -0.328 0.262 -0.246 0.486 sum 5.595 -17.137 -12.475 21.923 Atomic orbital electron populations 1.24114 0.95209 1.03318 0.96674 1.23217 0.96993 0.97523 1.03311 1.20884 0.92821 0.97517 0.88034 1.47115 1.09104 1.61892 1.14294 1.19355 0.95861 0.92032 0.80563 1.21519 1.40823 0.93342 1.01946 0.95235 1.25792 0.95856 0.95290 1.01415 1.70048 1.49210 1.08571 1.30553 0.85762 0.79118 0.79441 0.78943 1.20072 1.20245 1.15805 1.15907 0.83584 0.78878 0.81934 1.90817 1.53050 1.62957 1.39853 1.41812 1.10174 1.62632 1.13708 1.23268 0.91814 1.01142 0.95185 1.66149 1.14662 1.18784 1.24731 1.20152 0.87815 0.99723 0.96540 1.19300 0.94811 0.95817 0.89880 1.21846 1.01714 0.92324 1.03057 1.21660 0.99625 1.00917 0.95987 1.21905 0.93863 1.00284 1.03278 1.27372 1.07065 1.13149 0.97700 1.85367 1.00691 1.56614 1.12025 0.87659 0.86293 0.87148 0.88870 0.89111 0.92478 0.95460 0.92246 0.73266 0.93726 0.89911 0.91937 0.94075 0.90708 0.93210 0.91484 0.89938 0.93570 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 14.32 67.78 0.97 -2.12 16 2 C -0.19 -4.52 9.85 25.65 0.25 -4.27 16 3 C 0.13 3.78 5.61 85.63 0.48 4.26 16 4 N -0.59 -23.35 2.44 -848.58 -2.07 -25.42 16 5 C 0.24 11.35 4.23 85.63 0.36 11.71 16 6 C -0.54 -30.66 9.94 25.60 0.25 -30.40 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 8 C 0.01 0.85 5.47 84.65 0.46 1.32 16 9 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 10 Si 0.94 43.05 27.47 68.60 1.88 44.94 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 14 C 0.70 28.47 8.24 179.05 1.48 29.95 16 15 O -0.59 -28.20 13.39 -3.99 -0.05 -28.25 16 16 N -0.63 -21.03 5.27 -327.46 -1.73 -22.76 16 17 C 0.25 8.58 8.19 179.21 1.47 10.05 16 18 N -0.52 -15.91 9.60 -189.58 -1.82 -17.73 16 19 C 0.09 2.34 5.41 41.44 0.22 2.56 16 20 C 0.00 0.09 0.90 -52.93 -0.05 0.04 16 21 C -0.13 -2.04 8.43 71.98 0.61 -1.43 16 22 C -0.12 -2.38 7.91 71.98 0.57 -1.81 16 23 C -0.14 -2.05 8.13 71.98 0.58 -1.47 16 24 C -0.31 -7.94 10.38 66.73 0.69 -7.25 16 25 S 0.20 6.73 20.21 -56.49 -1.14 5.59 16 26 H 0.11 2.03 7.84 -2.91 -0.02 2.01 16 27 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.09 2.82 7.72 -2.39 -0.02 2.80 16 30 H 0.09 2.25 6.36 -2.39 -0.02 2.24 16 31 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 32 H 0.03 1.35 6.85 -2.39 -0.02 1.34 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.43 11.75 6.55 -92.71 -0.61 11.15 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.07 7.97 -2.39 -0.02 1.05 16 41 H 0.07 0.89 7.14 -2.39 -0.02 0.88 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.20 3.70 7.30 -2.91 -0.02 3.68 16 Total: -1.00 -72.55 374.44 4.06 -68.48 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.33 Total: 22.43 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 8.36 Total: 11.15 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.32 Total: -124.33 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 6.73 SS G_CDS: -1.14 Total: 5.59 kcal Total: -72.55 4.06 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493909451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.922 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds