Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 N 1.46497 * 109.47348 * 120.00189 * 2 1 3 5 5 C 1.46498 * 120.00052 * 304.95334 * 4 2 1 6 6 C 1.50706 * 109.47179 * 269.99996 * 5 4 2 7 7 H 1.08001 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99788 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00471 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99742 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47227 * 60.00204 * 10 8 6 12 12 H 1.48505 * 109.46960 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46983 * 299.99946 * 10 8 6 14 14 C 1.34774 * 119.99757 * 124.95412 * 4 2 1 15 15 O 1.21283 * 119.99713 * 185.24527 * 14 4 2 16 16 C 1.50693 * 120.00434 * 5.24939 * 14 4 2 17 17 H 1.09003 * 115.56032 * 29.32665 * 16 14 4 18 18 C 1.53005 * 117.50032 * 243.64051 * 16 14 4 19 19 C 1.52998 * 117.50383 * 175.01604 * 16 14 4 20 20 H 1.09008 * 117.51354 * 0.02562 * 19 16 14 21 21 C 1.50697 * 117.50274 * 214.98167 * 19 16 14 22 22 C 1.38253 * 119.99705 * 299.95883 * 21 19 16 23 23 C 1.38213 * 120.07149 * 180.02562 * 22 21 19 24 24 C 1.38259 * 120.07144 * 359.97438 * 23 22 21 25 25 C 1.38370 * 119.99584 * 359.97438 * 24 23 22 26 26 F 1.35109 * 120.03178 * 180.02562 * 25 24 23 27 27 C 1.38364 * 120.00157 * 119.98319 * 21 19 16 28 28 F 1.35102 * 120.03754 * 359.70545 * 27 21 19 29 29 H 1.08994 * 109.47549 * 295.10705 * 1 2 3 30 30 H 1.08998 * 109.47567 * 55.11437 * 1 2 3 31 31 H 1.09006 * 109.47015 * 175.11088 * 1 2 3 32 32 H 1.09001 * 109.47041 * 240.00639 * 2 1 3 33 33 H 1.09004 * 109.47549 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47547 * 300.00502 * 3 2 1 35 35 H 1.09006 * 109.47198 * 60.00301 * 3 2 1 36 36 H 1.09004 * 109.47233 * 29.99609 * 5 4 2 37 37 H 1.08995 * 109.47587 * 149.99898 * 5 4 2 38 38 H 0.97001 * 119.99798 * 179.97438 * 9 8 6 39 39 H 1.08997 * 117.49932 * 145.01866 * 18 16 14 40 40 H 1.08999 * 117.49218 * 359.97438 * 18 16 14 41 41 H 1.07998 * 119.96619 * 0.03055 * 22 21 19 42 42 H 1.08003 * 119.96986 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.00227 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5772 -0.2566 2.5240 6 6 2.5239 0.7913 3.0501 7 1 3.3693 1.1031 2.4547 8 6 2.3102 1.3527 4.2911 9 7 1.2804 0.9734 5.0159 10 14 3.4832 2.6522 4.9430 11 1 3.4955 3.8155 4.0203 12 1 3.0361 3.0920 6.2891 13 1 4.8509 2.0813 5.0382 14 6 2.8734 -1.7253 1.0748 15 8 3.2034 -2.3573 2.0559 16 6 3.4195 -2.0968 -0.2796 17 1 3.5127 -1.2757 -0.9905 18 6 3.0531 -3.4744 -0.8355 19 6 4.4741 -3.2038 -0.3369 20 1 4.7728 -3.6639 0.6051 21 6 5.5621 -3.0756 -1.3716 22 6 5.2365 -3.0245 -2.7143 23 6 6.2332 -2.9075 -3.6647 24 6 7.5579 -2.8408 -3.2747 25 6 7.8870 -2.8906 -1.9316 26 9 9.1813 -2.8249 -1.5496 27 6 6.8869 -3.0096 -0.9780 28 9 7.2056 -3.0540 0.3341 29 1 -0.3634 0.4360 0.9305 30 1 -0.3634 0.5877 -0.8429 31 1 -0.3633 -1.0240 -0.0876 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8901 36 1 0.5735 0.1627 2.4544 37 1 1.5681 -1.1107 3.2010 38 1 1.1303 1.3682 5.8892 39 1 2.9053 -3.5596 -1.9121 40 1 2.4174 -4.1120 -0.2213 41 1 4.2022 -3.0760 -3.0209 42 1 5.9769 -2.8673 -4.7131 43 1 8.3358 -2.7497 -4.0182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524646995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = -75.560297 kcal Electronic energy + Delta-G solvation = -27452.140009 eV Core-core repulsion = 23327.255608 eV Total energy + Delta-G solvation = -4124.884401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.54826 -48.61020 -40.10558 -38.95395 -36.66932 -35.62476 -32.80388 -30.98156 -30.80445 -30.50262 -27.70178 -26.76990 -24.77906 -24.13166 -22.94836 -22.17706 -21.16624 -20.73169 -18.19366 -18.07539 -17.43671 -17.10272 -16.61896 -16.43239 -16.39734 -15.38235 -15.22206 -15.00463 -14.67987 -14.54710 -14.39410 -14.14958 -13.52678 -13.41155 -13.19129 -12.76030 -12.59230 -12.48498 -12.44905 -12.20157 -11.89920 -11.68321 -11.47601 -11.34977 -11.27389 -10.96591 -10.87483 -10.77852 -10.51411 -10.46425 -10.33748 -10.00151 -9.54946 -9.07089 -8.94059 -8.81076 -8.39952 -7.64341 -6.02133 -4.05612 0.67477 0.70332 2.91814 3.23572 3.33054 3.37761 3.41601 3.51286 3.81989 4.05302 4.19243 4.26762 4.44331 4.47684 4.61252 4.72118 4.83391 4.90927 5.00433 5.20915 5.31700 5.37501 5.49054 5.53018 5.56944 5.58831 5.66755 5.72105 5.77800 5.91112 5.97330 6.01835 6.15846 6.23712 6.26552 6.35996 6.50660 6.59777 6.94958 7.12822 7.48693 7.57907 7.94854 8.26567 8.44621 8.92070 9.09984 9.58686 11.05909 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003684 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.510289 B = 7598.421055 C = 8617.778044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.587 5.587 5 C 0.245 3.755 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.534 3.466 15 O -0.540 6.540 16 C -0.165 4.165 17 H 0.123 0.877 18 C -0.140 4.140 19 C -0.099 4.099 20 H 0.133 0.867 21 C -0.051 4.051 22 C -0.105 4.105 23 C -0.098 4.098 24 C -0.134 4.134 25 C 0.068 3.932 26 F -0.129 7.129 27 C 0.078 3.922 28 F -0.120 7.120 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -7.100 -21.467 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.318 5.318 5 C 0.126 3.874 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.320 3.680 15 O -0.418 6.418 16 C -0.186 4.186 17 H 0.141 0.859 18 C -0.177 4.177 19 C -0.117 4.117 20 H 0.151 0.849 21 C -0.052 4.052 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.153 4.153 25 C 0.048 3.952 26 F -0.108 7.108 27 C 0.057 3.943 28 F -0.098 7.098 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.038 -7.371 -20.660 22.506 hybrid contribution 1.054 0.970 0.758 1.620 sum 6.092 -6.402 -19.902 21.776 Atomic orbital electron populations 1.22149 0.95385 1.01603 1.02822 1.21004 0.94260 0.93828 0.87977 1.22193 1.01190 0.96054 1.02430 1.48205 1.44304 1.30459 1.08832 1.19282 0.95244 0.95779 0.77122 1.21411 1.11174 1.21351 1.02102 0.92427 1.24910 0.95487 0.97129 0.96504 1.69919 1.28399 1.43130 1.11981 0.86623 0.81493 0.81692 0.78018 1.20264 1.21212 1.20224 1.19261 0.79540 0.80848 0.88349 1.90674 1.59280 1.52544 1.39310 1.22554 1.03282 0.93773 0.99013 0.85924 1.23105 0.96505 0.96820 1.01291 1.20935 0.88026 1.03327 0.99411 0.84941 1.19162 0.91259 0.99956 0.94790 1.21066 1.00733 0.99521 0.90929 1.21032 0.91362 0.98876 1.00340 1.21068 0.98363 1.02667 0.93195 1.17692 0.78136 1.06435 0.92960 1.91535 1.33475 1.93872 1.91908 1.17519 0.92475 1.05937 0.78343 1.91577 1.93241 1.93582 1.31418 0.91027 0.92267 0.92929 0.90651 0.92953 0.93243 0.89978 0.94563 0.93957 0.92732 0.87604 0.87374 0.84028 0.84171 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.19 37.15 0.34 -1.99 16 2 C 0.13 2.13 3.07 -67.94 -0.21 1.92 16 3 C -0.16 -2.60 8.61 37.16 0.32 -2.28 16 4 N -0.59 -12.20 2.39 -167.48 -0.40 -12.60 16 5 C 0.24 6.29 4.76 -5.19 -0.02 6.26 16 6 C -0.52 -14.54 7.85 -34.44 -0.27 -14.81 16 7 H 0.06 1.61 7.59 -52.49 -0.40 1.21 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.53 11.08 7.44 -10.99 -0.08 11.00 16 15 O -0.54 -13.67 15.82 5.55 0.09 -13.59 16 16 C -0.16 -2.44 4.60 -91.77 -0.42 -2.86 16 17 H 0.12 1.57 6.74 -51.93 -0.35 1.22 16 18 C -0.14 -1.58 9.56 -26.73 -0.26 -1.84 16 19 C -0.10 -1.37 5.30 -91.77 -0.49 -1.86 16 20 H 0.13 2.20 7.41 -51.92 -0.38 1.81 16 21 C -0.05 -0.61 5.61 -104.57 -0.59 -1.19 16 22 C -0.10 -0.89 9.30 -39.59 -0.37 -1.26 16 23 C -0.10 -0.69 10.04 -39.58 -0.40 -1.09 16 24 C -0.13 -1.13 10.02 -39.53 -0.40 -1.53 16 25 C 0.07 0.80 7.31 -39.36 -0.29 0.52 16 26 F -0.13 -1.68 17.18 2.25 0.04 -1.64 16 27 C 0.08 1.06 7.25 -39.37 -0.29 0.77 16 28 F -0.12 -1.97 16.53 2.25 0.04 -1.94 16 29 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.98 5.60 -51.93 -0.29 0.69 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 36 H 0.04 0.94 6.09 -51.93 -0.32 0.62 16 37 H 0.04 1.25 7.36 -51.93 -0.38 0.87 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.11 0.81 6.18 -51.93 -0.32 0.49 16 40 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.14 0.87 6.02 -52.49 -0.32 0.55 16 42 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -33.52 362.78 -8.10 -41.62 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.54 Total: 0.02 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.51 Total: -8.58 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.34 Total: -38.36 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.52 -8.10 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524646995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.937 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds