Wall clock time and date at job start Tue Mar 31 2020 14:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47471 * 2 1 4 4 C 1.53006 * 109.46791 * 119.99971 * 2 1 3 5 5 H 1.09001 * 109.46872 * 185.58219 * 4 2 1 6 6 O 1.45199 * 109.46782 * 305.58142 * 4 2 1 7 7 C 1.34221 * 117.00281 * 269.99957 * 6 4 2 8 8 O 1.20830 * 120.00278 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00288 * 180.02562 * 7 6 4 10 10 C 1.52993 * 109.47589 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47577 * 179.97438 * 10 9 7 12 12 H 1.07993 * 119.99634 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00226 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00297 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00301 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47368 * 59.99494 * 15 13 11 17 17 H 1.48495 * 109.47616 * 179.97438 * 15 13 11 18 18 H 1.48513 * 109.46906 * 300.00155 * 15 13 11 19 19 C 1.50698 * 109.46900 * 65.58376 * 4 2 1 20 20 O 1.21278 * 119.99902 * 245.97807 * 19 4 2 21 21 N 1.34782 * 119.99932 * 65.98647 * 19 4 2 22 22 C 1.46499 * 119.99606 * 175.04980 * 21 19 4 23 23 C 1.50702 * 109.46754 * 179.97438 * 22 21 19 24 24 C 1.34506 * 125.78936 * 90.00305 * 23 22 21 25 25 C 1.41382 * 106.84240 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84215 * 0.02562 * 25 24 23 27 27 O 1.34305 * 108.41810 * 359.73297 * 26 25 24 28 28 H 1.09008 * 109.46730 * 60.00184 * 1 2 3 29 29 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47258 * 300.00452 * 1 2 3 31 31 H 1.09006 * 109.47357 * 239.99454 * 2 1 3 32 32 H 1.09003 * 109.47440 * 174.09843 * 3 2 1 33 33 H 1.09000 * 109.46771 * 294.09871 * 3 2 1 34 34 H 1.09000 * 109.47133 * 54.09455 * 3 2 1 35 35 H 1.09001 * 109.47328 * 300.00445 * 9 7 6 36 36 H 1.09005 * 109.47171 * 59.99897 * 9 7 6 37 37 H 1.09004 * 109.47673 * 299.99990 * 10 9 7 38 38 H 1.08999 * 109.47444 * 60.00124 * 10 9 7 39 39 H 0.96995 * 120.00395 * 179.97438 * 14 13 11 40 40 H 0.96998 * 119.99634 * 354.76599 * 21 19 4 41 41 H 1.08997 * 109.47210 * 299.99367 * 22 21 19 42 42 H 1.09000 * 109.47599 * 59.99729 * 22 21 19 43 43 H 1.08003 * 126.58129 * 359.96231 * 24 23 22 44 44 H 1.08005 * 126.58069 * 179.97438 * 25 24 23 45 45 H 1.07999 * 125.79434 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1253 -0.6355 1.3007 6 8 1.4502 -0.1179 2.4310 7 6 2.1197 0.9000 2.9942 8 8 3.1638 1.2749 2.5154 9 6 1.5692 1.5754 4.2237 10 6 2.5182 2.6935 4.6596 11 6 1.9674 3.3693 5.8889 12 1 1.0341 3.0345 6.3166 13 6 2.6551 4.4150 6.4673 14 7 3.7915 4.8231 5.9460 15 14 1.9727 5.2522 7.9913 16 1 1.8441 4.2578 9.0868 17 1 2.8938 6.3375 8.4143 18 1 0.6379 5.8265 7.6849 19 6 1.6536 -2.1764 1.1821 20 8 0.8644 -2.6318 1.9825 21 7 2.1852 -2.9716 0.2326 22 6 1.8947 -4.4075 0.2328 23 6 2.6044 -5.0637 -0.9234 24 6 3.8451 -5.5822 -0.8928 25 6 4.1084 -6.0910 -2.1854 26 6 3.0130 -5.8524 -2.9287 27 8 2.1031 -5.2349 -2.1576 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1250 1.4443 0.1057 33 1 1.7656 1.9248 -0.9381 34 1 1.5930 1.9859 0.8324 35 1 0.5895 1.9969 3.9989 36 1 1.4748 0.8454 5.0278 37 1 3.4978 2.2716 4.8847 38 1 2.6131 3.4235 3.8558 39 1 4.2751 5.5590 6.3527 40 1 2.7568 -2.5924 -0.4533 41 1 2.2396 -4.8478 1.1684 42 1 0.8202 -4.5609 0.1335 43 1 4.5124 -5.6053 -0.0439 44 1 5.0154 -6.5771 -2.5133 45 1 2.8849 -6.1171 -3.9679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:13 Heat of formation + Delta-G solvation = -122.149628 kcal Electronic energy + Delta-G solvation = -27115.060761 eV Core-core repulsion = 23099.243611 eV Total energy + Delta-G solvation = -4015.817150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.04126 -40.80329 -39.40005 -36.57939 -35.42423 -34.68010 -33.57036 -33.40756 -31.14648 -31.00333 -28.34908 -27.17250 -26.26092 -25.43605 -22.37249 -22.21916 -21.49471 -21.06070 -20.26788 -19.51838 -18.36431 -17.52762 -17.22495 -16.75328 -16.48263 -16.23480 -15.72437 -15.50514 -15.09206 -14.62540 -14.47392 -14.37463 -14.00379 -13.79972 -13.29086 -13.18323 -13.09345 -12.83058 -12.70664 -12.39903 -12.26185 -12.17755 -12.11717 -11.58660 -11.25952 -11.17559 -10.95429 -10.92498 -10.66923 -10.43309 -10.37970 -10.04065 -9.96004 -9.84547 -9.55881 -9.49874 -9.18688 -9.01334 -8.36713 -6.00982 -4.05619 1.11049 2.06654 2.32970 2.41075 2.64192 2.80042 3.34012 3.37887 3.39184 3.44328 4.09573 4.37620 4.45172 4.52681 4.56301 4.58522 4.77741 4.89299 4.92303 5.12882 5.23822 5.33707 5.34478 5.41154 5.47277 5.53688 5.59307 5.66201 5.82312 5.91643 5.94160 5.95315 6.00831 6.13577 6.20173 6.27752 6.38001 6.60567 6.64731 6.90014 7.07516 7.66547 7.73455 7.89205 7.98251 8.24224 8.39843 9.01136 9.58369 11.09921 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.002193 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.842109 B =12763.627134 C =12948.311433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.073 3.927 5 H 0.109 0.891 6 O -0.332 6.332 7 C 0.457 3.543 8 O -0.500 6.500 9 C -0.103 4.103 10 C 0.035 3.965 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.524 3.476 20 O -0.510 6.510 21 N -0.730 5.730 22 C 0.205 3.795 23 C -0.038 4.038 24 C -0.182 4.182 25 C -0.218 4.218 26 C -0.029 4.029 27 O -0.171 6.171 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.405 0.595 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -20.551 -19.919 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.014 3.986 5 H 0.127 0.873 6 O -0.249 6.249 7 C 0.300 3.700 8 O -0.387 6.387 9 C -0.140 4.140 10 C -0.002 4.002 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.310 3.690 20 O -0.383 6.383 21 N -0.386 5.386 22 C 0.082 3.918 23 C -0.089 4.089 24 C -0.202 4.202 25 C -0.237 4.237 26 C -0.098 4.098 27 O -0.067 6.067 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.239 0.761 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.239 -20.554 -19.510 28.427 hybrid contribution 0.455 0.445 0.266 0.690 sum -1.784 -20.108 -19.244 27.890 Atomic orbital electron populations 1.21801 0.93738 1.02089 1.02739 1.21527 0.97744 0.97891 0.95087 1.21928 1.02293 0.94088 1.02134 1.22421 1.00396 0.89376 0.86401 0.87303 1.86716 1.51190 1.46993 1.39984 1.24882 0.82961 0.76844 0.85275 1.90622 1.23402 1.62194 1.62450 1.21789 1.02610 0.99437 0.90177 1.19007 0.93737 0.91005 0.96443 1.21123 1.07606 1.16518 1.11423 0.92339 1.25012 0.94887 0.96930 0.97475 1.69979 1.14908 1.27536 1.40417 0.86602 0.78794 0.79105 0.83156 1.20156 1.21284 1.20154 1.20274 0.80654 0.87452 0.80641 1.90753 1.32273 1.75573 1.39721 1.45944 1.53212 1.07551 1.31887 1.19557 1.00175 0.79568 0.92456 1.22261 0.94985 1.06090 0.85521 1.21768 0.96344 1.02917 0.99178 1.21912 1.00784 1.06883 0.94091 1.24163 0.88365 0.99926 0.97318 1.84055 1.41491 1.61006 1.20130 0.92275 0.92787 0.91246 0.89857 0.91249 0.92337 0.92107 0.88888 0.88824 0.95605 0.95558 0.92816 0.76052 0.88065 0.89418 0.83000 0.83131 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.81 37.16 0.33 -1.38 16 2 C -0.10 -1.19 2.73 -90.62 -0.25 -1.44 16 3 C -0.15 -1.92 7.76 37.16 0.29 -1.63 16 4 C 0.07 1.00 2.34 -27.88 -0.07 0.94 16 5 H 0.11 1.47 7.16 -51.93 -0.37 1.10 16 6 O -0.33 -5.71 8.48 -45.86 -0.39 -6.10 16 7 C 0.46 8.85 6.52 36.00 0.23 9.08 16 8 O -0.50 -10.56 13.01 -18.75 -0.24 -10.81 16 9 C -0.10 -2.12 5.75 -27.89 -0.16 -2.28 16 10 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 15 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.52 6.81 6.18 -10.98 -0.07 6.74 16 20 O -0.51 -8.49 16.52 -14.02 -0.23 -8.72 16 21 N -0.73 -6.73 5.48 -61.47 -0.34 -7.07 16 22 C 0.21 1.72 6.21 -5.19 -0.03 1.69 16 23 C -0.04 -0.31 6.69 -35.63 -0.24 -0.54 16 24 C -0.18 -1.33 10.81 -39.71 -0.43 -1.76 16 25 C -0.22 -1.38 10.91 -39.70 -0.43 -1.81 16 26 C -0.03 -0.18 12.09 29.42 0.36 0.18 16 27 O -0.17 -1.41 10.65 5.69 0.06 -1.35 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 30 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 31 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 32 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.95 6.56 -51.93 -0.34 0.61 16 35 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.40 2.92 8.07 -40.82 -0.33 2.59 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -34.50 381.08 -7.47 -41.97 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.79 Total: 0.91 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.00 Total: -4.91 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.40 Total: -33.23 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.80 Total: -26.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.50 -7.47 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.181 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds