Wall clock time and date at job start Tue Mar 31 2020 14:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 C 1.53003 * 109.47024 * 240.00469 * 2 1 3 5 5 O 1.42900 * 109.47641 * 120.00425 * 2 1 3 6 6 C 1.35708 * 116.99742 * 62.84930 * 5 2 1 7 7 C 1.39242 * 120.37609 * 175.77906 * 6 5 2 8 8 C 1.38308 * 118.44636 * 180.02562 * 7 6 5 9 9 C 1.39520 * 119.12980 * 0.02562 * 8 7 6 10 10 C 1.47817 * 119.65832 * 179.97438 * 9 8 7 11 11 O 1.21464 * 120.00184 * 359.97438 * 10 9 8 12 12 O 1.34709 * 119.99707 * 180.02562 * 10 9 8 13 13 C 1.45206 * 117.00114 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47269 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.46645 * 65.00402 * 14 13 12 16 16 C 1.42902 * 113.99479 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47116 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99398 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99751 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47270 * 90.00255 * 21 19 17 23 23 H 1.48502 * 109.46680 * 209.99969 * 21 19 17 24 24 H 1.48497 * 109.47286 * 329.99774 * 21 19 17 25 25 N 1.32830 * 120.67787 * 0.02562 * 9 8 7 26 26 C 1.31349 * 121.69552 * 0.02562 * 25 9 8 27 27 H 1.09002 * 109.46750 * 317.57210 * 1 2 3 28 28 H 1.08998 * 109.47202 * 77.56738 * 1 2 3 29 29 H 1.09001 * 109.47229 * 197.57568 * 1 2 3 30 30 H 1.09004 * 109.47126 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47082 * 300.00357 * 3 2 1 32 32 H 1.08998 * 109.47033 * 60.00552 * 3 2 1 33 33 H 1.09009 * 109.46868 * 288.44908 * 4 2 1 34 34 H 1.08997 * 109.47153 * 48.44813 * 4 2 1 35 35 H 1.08992 * 109.47447 * 168.45313 * 4 2 1 36 36 H 1.08000 * 120.77810 * 0.02562 * 7 6 5 37 37 H 1.08000 * 120.43514 * 179.73002 * 8 7 6 38 38 H 1.08995 * 109.47081 * 300.00347 * 13 12 10 39 39 H 1.09001 * 109.46891 * 60.00023 * 13 12 10 40 40 H 1.09000 * 109.46975 * 184.99903 * 14 13 12 41 41 H 1.08995 * 109.47331 * 305.00333 * 14 13 12 42 42 H 1.08996 * 109.47658 * 299.99926 * 16 15 14 43 43 H 1.09005 * 109.47375 * 60.00226 * 16 15 14 44 44 H 0.97001 * 120.00078 * 180.02562 * 20 19 17 45 45 H 1.08002 * 119.59719 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.6916 -1.9879 1.2909 7 6 2.1923 -2.7344 2.3543 8 6 1.8463 -4.0706 2.4419 9 6 1.0133 -4.6217 1.4677 10 6 0.6366 -6.0487 1.5496 11 8 1.0523 -6.7353 2.4613 12 8 -0.1670 -6.5880 0.6125 13 6 -0.4949 -7.9952 0.7558 14 6 -1.4103 -8.4251 -0.3923 15 8 -0.7014 -8.3263 -1.6292 16 6 -1.4703 -8.7076 -2.7717 17 6 -0.6290 -8.5648 -4.0139 18 1 0.3910 -8.2179 -3.9382 19 6 -1.1610 -8.8779 -5.2467 20 7 -2.4030 -9.3008 -5.3387 21 14 -0.1179 -8.7015 -6.7862 22 1 0.5976 -9.9761 -7.0481 23 1 -0.9923 -8.3781 -7.9421 24 1 0.8701 -7.6099 -6.5923 25 7 0.5560 -3.8775 0.4670 26 6 0.8666 -2.6062 0.3546 27 1 -0.3633 0.7586 0.6934 28 1 -0.3633 0.2212 -1.0035 29 1 -0.3634 -0.9797 0.3103 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.8544 -1.7910 -1.1525 34 1 1.5184 -0.3400 -2.1272 35 1 3.1102 -0.5465 -1.3582 36 1 2.8358 -2.2806 3.0935 37 1 2.2200 -4.6807 3.2510 38 1 0.4207 -8.5860 0.7317 39 1 -1.0051 -8.1544 1.7058 40 1 -1.7281 -9.4562 -0.2370 41 1 -2.2852 -7.7758 -0.4221 42 1 -1.7890 -9.7446 -2.6657 43 1 -2.3468 -8.0644 -2.8511 44 1 -2.7772 -9.5214 -6.2060 45 1 0.4753 -2.0326 -0.4727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815248506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:37 Heat of formation + Delta-G solvation = -117.833410 kcal Electronic energy + Delta-G solvation = -26814.439891 eV Core-core repulsion = 22798.809906 eV Total energy + Delta-G solvation = -4015.629985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62425 -40.25877 -38.80983 -36.97279 -35.95086 -34.87238 -32.73462 -32.47476 -31.39378 -29.92835 -28.03028 -27.91355 -26.89938 -25.03070 -24.00514 -22.54251 -22.18688 -21.26630 -20.94198 -18.26341 -17.79552 -17.68808 -16.65105 -16.47998 -16.28950 -15.91117 -15.45179 -15.32087 -14.82885 -14.71775 -14.51490 -14.34921 -14.09657 -13.64623 -13.58155 -13.32038 -13.26395 -12.78344 -12.67457 -12.51079 -12.47517 -12.18102 -12.07569 -11.90960 -11.37597 -11.30348 -11.13001 -10.89508 -10.82470 -10.75364 -10.55034 -10.31035 -10.10228 -10.01870 -9.73073 -9.08206 -8.82436 -8.77153 -8.16032 -6.08225 -4.09303 0.35465 0.87803 2.37373 2.54452 2.72282 3.32450 3.37067 3.43208 3.56029 4.00546 4.08749 4.23091 4.24012 4.36220 4.38147 4.55328 4.64322 4.79069 4.88907 5.02807 5.04431 5.13476 5.18402 5.22816 5.27783 5.28340 5.33446 5.34593 5.49523 5.52345 5.58189 5.61207 5.71733 5.75738 5.92587 5.97316 6.05869 6.16350 6.55696 6.80071 7.10787 7.43674 7.45412 7.82417 7.91071 8.17353 8.58263 9.03668 9.55116 11.03466 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.002892 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.983150 B = 9678.882741 C =11777.528181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.103 3.897 3 C -0.136 4.136 4 C -0.206 4.206 5 O -0.296 6.296 6 C 0.114 3.886 7 C -0.126 4.126 8 C -0.064 4.064 9 C 0.050 3.950 10 C 0.525 3.475 11 O -0.512 6.512 12 O -0.315 6.315 13 C 0.071 3.929 14 C 0.063 3.937 15 O -0.389 6.389 16 C 0.194 3.806 17 C -0.512 4.512 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.900 5.900 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 N -0.389 5.389 26 C 0.003 3.997 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.264 0.736 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 20.672 15.546 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.066 3.934 3 C -0.193 4.193 4 C -0.263 4.263 5 O -0.208 6.208 6 C 0.065 3.935 7 C -0.152 4.152 8 C -0.084 4.084 9 C -0.086 4.086 10 C 0.369 3.631 11 O -0.401 6.401 12 O -0.230 6.230 13 C -0.002 4.002 14 C -0.015 4.015 15 O -0.309 6.309 16 C 0.120 3.880 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 N -0.101 5.101 26 C -0.159 4.159 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.983 20.149 15.160 26.164 hybrid contribution 0.532 0.160 -0.377 0.671 sum 7.515 20.309 14.783 26.220 Atomic orbital electron populations 1.22915 0.94232 1.04528 1.04228 1.22005 0.94310 0.93371 0.83688 1.21812 1.02307 0.91902 1.03317 1.22974 1.03139 1.02832 0.97351 1.86126 1.72164 1.18816 1.43663 1.20362 0.93471 0.84640 0.94998 1.20863 1.02776 0.92843 0.98677 1.21927 0.94013 0.94397 0.98091 1.20008 1.01395 0.92277 0.94913 1.20615 0.76046 0.86872 0.79579 1.90822 1.53046 1.61849 1.34394 1.86781 1.60188 1.27891 1.48092 1.23296 1.00538 0.77829 0.98552 1.22306 0.94114 0.99137 0.85948 1.87930 1.40385 1.88723 1.13887 1.20228 0.91667 0.94012 0.82068 1.21060 0.99571 1.44378 0.90056 0.91527 1.24943 0.95260 0.95156 0.99168 1.69964 1.13698 1.45193 1.25047 0.86334 0.79888 0.78605 0.81662 1.20489 1.21079 1.19611 1.67664 1.17830 1.05305 1.19270 1.23902 0.99471 0.91812 1.00733 0.91027 0.90032 0.90092 0.91323 0.89973 0.91338 0.89808 0.89980 0.91019 0.82996 0.82514 0.90357 0.90312 0.91925 0.93123 0.97655 0.97475 0.92686 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 8.12 37.16 0.30 -1.01 16 2 C 0.10 0.72 1.11 -90.62 -0.10 0.62 16 3 C -0.14 -0.69 8.74 37.16 0.32 -0.36 16 4 C -0.21 -1.49 8.08 37.16 0.30 -1.19 16 5 O -0.30 -2.67 9.79 -18.83 -0.18 -2.86 16 6 C 0.11 1.17 6.09 -38.83 -0.24 0.93 16 7 C -0.13 -1.19 10.12 -39.18 -0.40 -1.59 16 8 C -0.06 -0.72 9.62 -39.08 -0.38 -1.09 16 9 C 0.05 0.73 6.74 -83.04 -0.56 0.17 16 10 C 0.53 8.84 7.94 34.65 0.28 9.11 16 11 O -0.51 -8.80 16.10 -19.24 -0.31 -9.10 16 12 O -0.32 -5.91 10.00 -43.30 -0.43 -6.34 16 13 C 0.07 1.21 5.85 37.16 0.22 1.42 16 14 C 0.06 1.20 6.33 37.16 0.24 1.44 16 15 O -0.39 -9.82 10.30 -38.80 -0.40 -10.22 16 16 C 0.19 5.46 5.69 36.01 0.20 5.67 16 17 C -0.51 -15.46 9.43 -34.44 -0.32 -15.78 16 18 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 21 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 25 N -0.39 -5.88 10.10 -9.69 -0.10 -5.98 16 26 C 0.00 0.03 6.93 -17.38 -0.12 -0.09 16 27 H 0.07 0.41 8.02 -51.93 -0.42 0.00 16 28 H 0.08 0.43 7.85 -51.93 -0.41 0.02 16 29 H 0.08 0.64 4.74 -51.93 -0.25 0.40 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.76 4.47 -51.92 -0.23 0.52 16 34 H 0.08 0.48 7.90 -51.93 -0.41 0.07 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.16 1.48 7.63 -52.49 -0.40 1.08 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.19 1.86 3.60 -52.49 -0.19 1.67 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -35.18 376.44 -6.88 -42.06 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.49 Total: -3.68 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.35 Total: -0.21 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.64 Total: -32.47 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.33 Total: -28.52 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.18 -6.88 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815248506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.775 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds