Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 N 1.46500 * 109.47372 * 180.02562 * 3 2 1 5 5 C 1.35051 * 125.65697 * 124.99771 * 4 3 2 6 6 C 1.38134 * 105.81700 * 179.97438 * 5 4 3 7 7 C 1.47180 * 127.07471 * 179.97438 * 6 5 4 8 8 C 1.34855 * 120.00030 * 180.02562 * 7 6 5 9 9 C 1.46366 * 120.00073 * 180.02562 * 8 7 6 10 10 N 1.31591 * 125.21624 * 355.05167 * 9 8 7 11 11 C 1.35494 * 109.67342 * 180.29404 * 10 9 8 12 12 C 1.39901 * 133.21530 * 179.72035 * 11 10 9 13 13 C 1.37670 * 119.77972 * 180.02562 * 12 11 10 14 14 C 1.38754 * 120.54028 * 359.95711 * 13 12 11 15 15 C 1.37976 * 120.45892 * 0.02562 * 14 13 12 16 16 C 1.38723 * 119.87244 * 359.97438 * 15 14 13 17 17 N 1.37682 * 125.21518 * 174.87157 * 9 8 7 18 18 C 1.37029 * 126.45714 * 359.97228 * 17 9 8 19 19 H 1.08000 * 119.99591 * 327.89201 * 18 17 9 20 20 C 1.38999 * 120.00390 * 147.88184 * 18 17 9 21 21 N 1.31343 * 119.99844 * 335.13678 * 20 18 17 22 22 Si 1.86798 * 120.00192 * 155.12907 * 20 18 17 23 23 H 1.48498 * 109.47437 * 270.00629 * 22 20 18 24 24 H 1.48502 * 109.46916 * 30.00462 * 22 20 18 25 25 H 1.48496 * 109.47206 * 150.00460 * 22 20 18 26 26 N 1.34871 * 105.84999 * 0.24207 * 6 5 4 27 27 N 1.28579 * 125.65345 * 304.99765 * 4 3 2 28 28 H 1.09004 * 109.47093 * 299.99952 * 1 2 3 29 29 H 1.08997 * 109.47324 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47093 * 240.00048 * 2 1 3 32 32 H 1.09002 * 109.47739 * 119.99916 * 2 1 3 33 33 H 1.09000 * 109.47463 * 59.99820 * 3 2 1 34 34 H 1.09011 * 109.46877 * 300.00327 * 3 2 1 35 35 H 1.08005 * 127.08870 * 0.02577 * 5 4 3 36 36 H 1.08005 * 119.99979 * 0.02562 * 7 6 5 37 37 H 1.08005 * 119.99991 * 0.02562 * 8 7 6 38 38 H 1.07994 * 120.10531 * 0.02562 * 12 11 10 39 39 H 1.08003 * 119.72652 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.76960 * 180.02562 * 14 13 12 41 41 H 1.08006 * 120.06133 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00807 * 354.09646 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2918 2.0720 -0.8997 6 6 5.5913 1.8036 -0.5160 7 6 6.8242 2.2643 -1.1747 8 6 8.0269 1.9143 -0.6751 9 6 9.2530 2.3729 -1.3299 10 7 9.3036 3.0495 -2.4574 11 6 10.5950 3.3047 -2.7787 12 6 11.2024 3.9689 -3.8496 13 6 12.5745 4.0688 -3.9026 14 6 13.3608 3.5167 -2.9015 15 6 12.7786 2.8585 -1.8378 16 6 11.3977 2.7471 -1.7663 17 7 10.5299 2.1655 -0.8588 18 6 10.8766 1.5035 0.2898 19 1 10.2235 1.5352 1.1494 20 6 12.0686 0.7910 0.3486 21 7 12.6153 0.3335 -0.7546 22 14 12.8931 0.4842 1.9964 23 1 13.8313 1.5958 2.2952 24 1 11.8599 0.4090 3.0605 25 1 13.6434 -0.7962 1.9438 26 7 5.4980 1.0275 0.5832 27 7 4.2548 0.8432 0.8548 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6765 1.9564 -0.8901 35 1 3.9711 2.6641 -1.7442 36 1 6.7657 2.8827 -2.0583 37 1 8.0854 1.2955 0.2082 38 1 10.5970 4.4017 -4.6322 39 1 13.0426 4.5814 -4.7300 40 1 14.4359 3.6028 -2.9554 41 1 13.3969 2.4308 -1.0624 42 1 12.1463 0.4175 -1.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865223741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = 168.089318 kcal Electronic energy + Delta-G solvation = -25388.679284 eV Core-core repulsion = 21757.342261 eV Total energy + Delta-G solvation = -3631.337023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.00081 -40.86156 -36.47823 -36.23766 -34.65753 -33.76289 -32.45514 -31.09079 -30.34496 -29.29313 -27.72435 -27.13417 -25.00385 -24.02720 -22.82241 -21.74661 -21.30828 -20.97803 -20.36717 -18.92496 -17.88250 -17.19025 -16.50931 -16.32812 -15.64502 -15.40565 -15.00941 -14.64907 -14.47865 -14.04475 -13.90697 -13.86179 -13.29770 -13.09259 -12.98704 -12.77912 -12.36141 -12.28277 -12.02594 -11.77071 -11.35614 -11.32074 -11.19872 -11.07266 -11.03768 -10.80464 -10.63784 -10.47182 -10.42361 -10.23554 -9.85131 -9.67247 -8.95831 -8.85415 -8.39939 -7.59455 -7.01985 -6.82256 -4.57789 1.19044 1.75712 2.26859 2.30643 2.58036 3.11911 3.12412 3.31259 3.32269 3.82965 4.07354 4.15543 4.28631 4.31590 4.48454 4.61310 4.72511 4.82630 4.89735 4.90471 5.02934 5.13446 5.14367 5.25978 5.46109 5.51777 5.62368 5.74157 5.79398 5.83719 5.95067 6.06356 6.27053 6.45847 6.50329 6.56904 6.63237 6.77194 6.95321 7.02863 7.09119 7.31595 7.44394 7.58457 7.71681 7.81239 7.96696 8.50401 8.62209 8.99966 9.13274 10.01454 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002863 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.952264 B = 9776.776658 C =11448.984801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.291 5.291 5 C -0.053 4.053 6 C 0.031 3.969 7 C -0.091 4.091 8 C -0.011 4.011 9 C 0.209 3.791 10 N -0.513 5.513 11 C 0.041 3.959 12 C -0.087 4.087 13 C -0.139 4.139 14 C -0.150 4.150 15 C -0.064 4.064 16 C 0.001 3.999 17 N -0.273 5.273 18 C -0.422 4.422 19 H 0.111 0.889 20 C 0.024 3.976 21 N -0.814 5.814 22 Si 1.082 2.918 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.275 1.275 26 N -0.259 5.259 27 N -0.093 5.093 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.193 0.807 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 2.335 -0.412 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.005 4.005 4 N -0.084 5.084 5 C -0.204 4.204 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.033 4.033 9 C -0.045 4.045 10 N -0.236 5.236 11 C -0.087 4.087 12 C -0.107 4.107 13 C -0.160 4.160 14 C -0.171 4.171 15 C -0.084 4.084 16 C -0.115 4.115 17 N 0.059 4.941 18 C -0.551 4.551 19 H 0.128 0.872 20 C -0.192 4.192 21 N -0.440 5.440 22 Si 0.905 3.095 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.126 5.126 27 N -0.072 5.072 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.210 0.790 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.709 0.891 1.258 15.785 hybrid contribution -0.843 1.005 -1.304 1.850 sum -16.553 1.896 -0.046 16.661 Atomic orbital electron populations 1.21699 0.93932 1.02812 1.02257 1.21832 0.96867 0.94616 1.04396 1.22180 0.73009 1.00138 1.05134 1.47163 1.08908 1.33476 1.18877 1.23939 0.90570 1.05913 0.99963 1.21053 0.93412 1.00557 0.95529 1.20822 0.87420 1.02870 1.00430 1.20884 0.87974 0.96738 0.97655 1.21398 0.85642 1.04737 0.92678 1.70500 1.19343 1.20992 1.12772 1.18867 0.89391 1.03530 0.96925 1.19966 0.93742 1.00430 0.96533 1.20573 0.93051 1.03030 0.99325 1.20606 0.98578 1.02523 0.95405 1.20288 0.91289 0.98092 0.98756 1.18902 0.92916 1.03950 0.95720 1.41509 1.04090 1.32991 1.15548 1.20809 1.10847 1.32892 0.90558 0.87181 1.26916 0.94225 0.92138 1.05918 1.70591 1.40134 1.31996 1.01233 0.83317 0.76414 0.77799 0.72003 1.20011 1.19928 1.19948 1.75476 1.08361 1.15041 1.13760 1.78077 0.96787 1.17490 1.14806 0.92120 0.92271 0.91669 0.90989 0.89898 0.88414 0.87750 0.79046 0.84121 0.84885 0.87054 0.87070 0.86994 0.85790 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.15 0.37 -0.27 16 2 C -0.14 -0.92 6.05 -26.73 -0.16 -1.08 16 3 C 0.12 0.79 6.44 -4.04 -0.03 0.76 16 4 N -0.29 -3.48 3.43 -60.58 -0.21 -3.69 16 5 C -0.05 -0.65 11.62 -16.17 -0.19 -0.84 16 6 C 0.03 0.52 7.01 -82.94 -0.58 -0.07 16 7 C -0.09 -1.67 9.77 -37.15 -0.36 -2.04 16 8 C -0.01 -0.23 9.39 -37.51 -0.35 -0.58 16 9 C 0.21 5.19 7.59 -154.05 -1.17 4.02 16 10 N -0.51 -12.73 10.75 -8.84 -0.10 -12.83 16 11 C 0.04 1.01 7.21 -84.69 -0.61 0.40 16 12 C -0.09 -1.83 10.11 -39.17 -0.40 -2.23 16 13 C -0.14 -2.66 10.01 -39.60 -0.40 -3.05 16 14 C -0.15 -3.07 10.03 -39.49 -0.40 -3.46 16 15 C -0.06 -1.54 8.36 -39.50 -0.33 -1.87 16 16 C 0.00 0.03 5.58 -83.79 -0.47 -0.43 16 17 N -0.27 -7.24 2.72 -57.46 -0.16 -7.39 16 18 C -0.42 -10.98 9.42 -14.95 -0.14 -11.12 16 19 H 0.11 2.77 7.78 -52.49 -0.41 2.36 16 20 C 0.02 0.61 4.34 -17.48 -0.08 0.54 16 21 N -0.81 -21.65 11.46 55.50 0.64 -21.01 16 22 Si 1.08 21.66 29.99 -169.99 -5.10 16.56 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 N -0.26 -4.79 12.08 33.13 0.40 -4.39 16 27 N -0.09 -1.47 12.84 60.35 0.78 -0.70 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.41 8.06 -51.92 -0.42 -0.01 16 35 H 0.19 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.14 2.45 7.68 -52.48 -0.40 2.05 16 37 H 0.13 2.92 7.49 -52.48 -0.39 2.53 16 38 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 39 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.12 3.08 6.20 -52.48 -0.33 2.75 16 42 H 0.29 8.23 6.89 -40.82 -0.28 7.95 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -32.11 362.59 -8.82 -40.93 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.25 Total: 8.39 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -5.29 Total: -21.33 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 1.35 Total: -50.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.10 Total: 16.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.11 -8.82 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865223741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.015 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds