Wall clock time and date at job start Tue Mar 31 2020 14:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47266 * 2 1 4 4 N 1.46500 * 109.47372 * 180.02562 * 3 2 1 5 5 C 1.35051 * 125.65697 * 124.99771 * 4 3 2 6 6 C 1.38134 * 105.81700 * 179.97438 * 5 4 3 7 7 C 1.47180 * 127.07471 * 179.97438 * 6 5 4 8 8 C 1.34855 * 120.00030 * 180.02562 * 7 6 5 9 9 C 1.46366 * 120.00073 * 180.02562 * 8 7 6 10 10 N 1.31591 * 125.21624 * 355.05167 * 9 8 7 11 11 C 1.35494 * 109.67342 * 180.29404 * 10 9 8 12 12 C 1.39901 * 133.21530 * 179.72035 * 11 10 9 13 13 C 1.37670 * 119.77972 * 180.02562 * 12 11 10 14 14 C 1.38754 * 120.54028 * 359.95711 * 13 12 11 15 15 C 1.37976 * 120.45892 * 0.02562 * 14 13 12 16 16 C 1.38723 * 119.87244 * 359.97438 * 15 14 13 17 17 N 1.37682 * 125.21518 * 174.87157 * 9 8 7 18 18 C 1.37029 * 126.45714 * 359.97228 * 17 9 8 19 19 H 1.08000 * 119.99591 * 327.89201 * 18 17 9 20 20 C 1.38999 * 120.00390 * 147.88184 * 18 17 9 21 21 N 1.31343 * 119.99844 * 335.13678 * 20 18 17 22 22 Si 1.86798 * 120.00192 * 155.12907 * 20 18 17 23 23 H 1.48498 * 109.47437 * 270.00629 * 22 20 18 24 24 H 1.48502 * 109.46916 * 30.00462 * 22 20 18 25 25 H 1.48496 * 109.47206 * 150.00460 * 22 20 18 26 26 N 1.34871 * 105.84999 * 0.24207 * 6 5 4 27 27 N 1.28579 * 125.65345 * 304.99765 * 4 3 2 28 28 H 1.09004 * 109.47093 * 299.99952 * 1 2 3 29 29 H 1.08997 * 109.47324 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47093 * 240.00048 * 2 1 3 32 32 H 1.09002 * 109.47739 * 119.99916 * 2 1 3 33 33 H 1.09000 * 109.47463 * 59.99820 * 3 2 1 34 34 H 1.09011 * 109.46877 * 300.00327 * 3 2 1 35 35 H 1.08005 * 127.08870 * 0.02577 * 5 4 3 36 36 H 1.08005 * 119.99979 * 0.02562 * 7 6 5 37 37 H 1.08005 * 119.99991 * 0.02562 * 8 7 6 38 38 H 1.07994 * 120.10531 * 0.02562 * 12 11 10 39 39 H 1.08003 * 119.72652 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.76960 * 180.02562 * 14 13 12 41 41 H 1.08006 * 120.06133 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00807 * 354.09646 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2918 2.0720 -0.8997 6 6 5.5913 1.8036 -0.5160 7 6 6.8242 2.2643 -1.1747 8 6 8.0269 1.9143 -0.6751 9 6 9.2530 2.3729 -1.3299 10 7 9.3036 3.0495 -2.4574 11 6 10.5950 3.3047 -2.7787 12 6 11.2024 3.9689 -3.8496 13 6 12.5745 4.0688 -3.9026 14 6 13.3608 3.5167 -2.9015 15 6 12.7786 2.8585 -1.8378 16 6 11.3977 2.7471 -1.7663 17 7 10.5299 2.1655 -0.8588 18 6 10.8766 1.5035 0.2898 19 1 10.2235 1.5352 1.1494 20 6 12.0686 0.7910 0.3486 21 7 12.6153 0.3335 -0.7546 22 14 12.8931 0.4842 1.9964 23 1 13.8313 1.5958 2.2952 24 1 11.8599 0.4090 3.0605 25 1 13.6434 -0.7962 1.9438 26 7 5.4980 1.0275 0.5832 27 7 4.2548 0.8432 0.8548 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6765 1.9564 -0.8901 35 1 3.9711 2.6641 -1.7442 36 1 6.7657 2.8827 -2.0583 37 1 8.0854 1.2955 0.2082 38 1 10.5970 4.4017 -4.6322 39 1 13.0426 4.5814 -4.7300 40 1 14.4359 3.6028 -2.9554 41 1 13.3969 2.4308 -1.0624 42 1 12.1463 0.4175 -1.5995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865223741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:13 Heat of formation + Delta-G solvation = 149.941152 kcal Electronic energy + Delta-G solvation = -25389.466248 eV Core-core repulsion = 21757.342261 eV Total energy + Delta-G solvation = -3632.123987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.13895 -42.66993 -38.07687 -37.15056 -36.45250 -35.11969 -33.39475 -32.94481 -31.69700 -31.00612 -29.23758 -27.93519 -26.89000 -25.48980 -23.64884 -23.14546 -22.67986 -22.55206 -21.83623 -20.47588 -19.53893 -18.42493 -17.82951 -17.48714 -17.44612 -16.52171 -16.36546 -16.07366 -15.75145 -15.68949 -15.29473 -15.03736 -14.78532 -14.46137 -14.24875 -14.07041 -13.57945 -13.27894 -13.02315 -12.91651 -12.72916 -12.66853 -12.56136 -12.53973 -12.39441 -12.06698 -11.99966 -11.92526 -11.77251 -11.66197 -11.45995 -10.95471 -10.80636 -10.73303 -9.86494 -9.48278 -8.86028 -8.52064 -6.56314 -0.30761 0.50444 0.78299 0.88119 1.43053 1.45282 1.50255 1.74258 1.85401 2.15296 2.40848 2.57073 2.86394 3.14792 3.27479 3.43734 3.56062 3.80788 3.82263 4.08608 4.10955 4.18571 4.23161 4.31867 4.34922 4.44942 4.49340 4.64130 4.68846 4.75054 4.79218 4.84374 5.01866 5.09336 5.11607 5.16984 5.21695 5.34469 5.45299 5.51857 5.56544 5.63071 5.65902 5.74833 5.93081 5.95504 6.25923 6.62293 7.13239 7.26102 7.44504 8.02430 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002863 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.952264 B = 9776.776658 C =11448.984801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.105 3.895 4 N -0.279 5.279 5 C -0.006 4.006 6 C -0.019 4.019 7 C -0.032 4.032 8 C -0.065 4.065 9 C 0.208 3.792 10 N -0.522 5.522 11 C 0.010 3.990 12 C -0.091 4.091 13 C -0.124 4.124 14 C -0.133 4.133 15 C -0.099 4.099 16 C -0.024 4.024 17 N -0.303 5.303 18 C -0.451 4.451 19 H 0.102 0.898 20 C -0.008 4.008 21 N -0.835 5.835 22 Si 1.130 2.870 23 H -0.262 1.262 24 H -0.261 1.261 25 H -0.270 1.270 26 N -0.302 5.302 27 N -0.115 5.115 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.147 0.853 35 H 0.246 0.754 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 4.312 -2.234 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.014 4.014 4 N -0.071 5.071 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.056 4.056 8 C -0.088 4.088 9 C -0.047 4.047 10 N -0.246 5.246 11 C -0.116 4.116 12 C -0.111 4.111 13 C -0.145 4.145 14 C -0.153 4.153 15 C -0.120 4.120 16 C -0.139 4.139 17 N 0.027 4.973 18 C -0.579 4.579 19 H 0.119 0.881 20 C -0.218 4.218 21 N -0.461 5.461 22 Si 0.946 3.054 23 H -0.187 1.187 24 H -0.185 1.185 25 H -0.195 1.195 26 N -0.168 5.168 27 N -0.094 5.094 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.165 0.835 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.123 0.877 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.866 2.868 -0.559 18.103 hybrid contribution -0.554 0.503 -0.902 1.172 sum -18.420 3.371 -1.461 18.782 Atomic orbital electron populations 1.21666 0.91825 1.03128 1.03476 1.21791 0.98555 0.94326 1.02787 1.22778 0.69733 1.00745 1.08124 1.47689 1.10684 1.31398 1.17360 1.24647 0.88666 1.03057 0.99532 1.21097 0.94567 1.03216 0.96787 1.21038 0.87072 0.98764 0.98686 1.20691 0.88323 1.00599 0.99141 1.22032 0.86294 1.03631 0.92736 1.70466 1.19600 1.21615 1.12879 1.19520 0.89378 1.04663 0.98080 1.20433 0.95061 0.99651 0.95961 1.21112 0.92162 1.01440 0.99775 1.21112 1.00594 0.99761 0.93870 1.20376 0.90628 1.00586 1.00411 1.19415 0.93969 1.04451 0.96033 1.41678 1.04750 1.34584 1.16335 1.20904 1.11737 1.34432 0.90792 0.88072 1.28331 0.94391 0.90857 1.08195 1.70708 1.40333 1.34254 1.00798 0.82775 0.76037 0.78058 0.68522 1.18722 1.18535 1.19480 1.75435 1.10032 1.16230 1.15112 1.78013 0.96374 1.18823 1.16227 0.91330 0.90571 0.91910 0.91966 0.92279 0.86721 0.83488 0.73780 0.82664 0.86710 0.84185 0.81890 0.83489 0.87711 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.14 -1.51 6.05 30.59 0.19 -1.32 16 3 C 0.10 1.01 6.44 86.38 0.56 1.57 16 4 N -0.28 -5.91 3.43 -345.57 -1.18 -7.09 16 5 C -0.01 -0.13 11.62 84.17 0.98 0.85 16 6 C -0.02 -0.64 7.01 41.00 0.29 -0.35 16 7 C -0.03 -1.17 9.77 23.84 0.23 -0.94 16 8 C -0.07 -3.01 9.39 23.61 0.22 -2.79 16 9 C 0.21 10.96 7.59 135.65 1.03 11.99 16 10 N -0.52 -26.65 10.75 -181.89 -1.95 -28.61 16 11 C 0.01 0.49 7.21 39.59 0.29 0.78 16 12 C -0.09 -3.69 10.11 22.54 0.23 -3.47 16 13 C -0.12 -4.36 10.01 22.26 0.22 -4.14 16 14 C -0.13 -5.22 10.03 22.33 0.22 -5.00 16 15 C -0.10 -4.92 8.36 22.32 0.19 -4.73 16 16 C -0.02 -1.29 5.58 38.83 0.22 -1.07 16 17 N -0.30 -17.22 2.72 -335.71 -0.91 -18.13 16 18 C -0.45 -25.36 9.42 84.06 0.79 -24.57 16 19 H 0.10 5.60 7.78 -2.91 -0.02 5.58 16 20 C -0.01 -0.41 4.34 84.95 0.37 -0.04 16 21 N -0.83 -47.20 11.46 21.67 0.25 -46.95 16 22 Si 1.13 45.70 29.99 68.60 2.06 47.76 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 26 N -0.30 -11.40 12.08 -49.09 -0.59 -12.00 16 27 N -0.12 -3.62 12.84 37.02 0.48 -3.15 16 28 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.15 0.26 8.06 -2.38 -0.02 0.24 16 35 H 0.25 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.16 5.21 7.68 -2.91 -0.02 5.19 16 37 H 0.11 5.59 7.49 -2.91 -0.02 5.57 16 38 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.15 4.66 8.06 -2.91 -0.02 4.63 16 41 H 0.10 5.50 6.20 -2.91 -0.02 5.48 16 42 H 0.27 16.30 6.89 -92.71 -0.64 15.66 16 Total: -1.00 -78.95 362.59 6.03 -72.92 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 1.17 Total: 28.58 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 6.73 Total: -33.33 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.92 Total: -115.92 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.06 Total: 47.76 kcal Total: -78.95 6.03 -72.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865223741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.858 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds