Wall clock time and date at job start Tue Mar 31 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 C 1.52999 * 109.46909 * 119.99499 * 2 1 3 5 5 N 1.46501 * 109.47107 * 65.00533 * 4 2 1 6 6 C 1.35415 * 119.46632 * 89.99604 * 5 4 2 7 7 C 1.35788 * 121.24686 * 179.69954 * 6 5 4 8 8 C 1.39432 * 120.13505 * 0.30554 * 7 6 5 9 9 C 1.39421 * 118.95298 * 359.97037 * 8 7 6 10 10 C 1.46924 * 120.59438 * 179.97438 * 9 8 7 11 11 O 1.21574 * 119.99906 * 0.02562 * 10 9 8 12 12 O 1.34827 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.45192 * 116.99655 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46897 * 180.02562 * 13 12 10 15 15 O 1.42902 * 109.47243 * 64.99947 * 14 13 12 16 16 C 1.42901 * 113.99961 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.46823 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00389 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00315 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00461 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99503 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46965 * 90.00409 * 21 19 17 23 23 H 1.48503 * 109.46912 * 209.99865 * 21 19 17 24 24 H 1.48500 * 109.47069 * 330.00151 * 21 19 17 25 25 C 1.34651 * 119.46690 * 270.25643 * 5 4 2 26 26 O 1.21877 * 120.10975 * 0.02562 * 25 5 4 27 27 H 1.08997 * 109.47653 * 300.00453 * 1 2 3 28 28 H 1.09005 * 109.47099 * 60.00394 * 1 2 3 29 29 H 1.08997 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47666 * 239.99916 * 2 1 3 31 31 H 1.09000 * 109.46978 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47062 * 299.99747 * 3 2 1 33 33 H 1.09007 * 109.46795 * 59.99577 * 3 2 1 34 34 H 1.08995 * 109.47597 * 305.00260 * 4 2 1 35 35 H 1.09004 * 109.47296 * 185.00545 * 4 2 1 36 36 H 1.08002 * 119.38078 * 359.97438 * 6 5 4 37 37 H 1.07992 * 119.93417 * 180.27705 * 7 6 5 38 38 H 1.08009 * 120.52472 * 180.02562 * 8 7 6 39 39 H 1.08995 * 109.47852 * 300.00214 * 13 12 10 40 40 H 1.09000 * 109.47174 * 60.00559 * 13 12 10 41 41 H 1.09004 * 109.47350 * 185.00614 * 14 13 12 42 42 H 1.09003 * 109.47191 * 305.00142 * 14 13 12 43 43 H 1.08995 * 109.47317 * 300.00472 * 16 15 14 44 44 H 1.08999 * 109.46715 * 60.00833 * 16 15 14 45 45 H 0.97002 * 119.99611 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 2.4837 -3.0280 0.6065 7 6 2.1635 -4.3458 0.5375 8 6 0.9572 -4.8017 1.0678 9 6 0.0935 -3.8851 1.6658 10 6 -1.1870 -4.3260 2.2356 11 8 -1.5014 -5.4994 2.1884 12 8 -2.0134 -3.4293 2.8107 13 6 -3.2617 -3.9359 3.3520 14 6 -4.0609 -2.7805 3.9582 15 8 -4.4392 -1.8691 2.9246 16 6 -5.1946 -0.7475 3.3866 17 6 -5.5380 0.1418 2.2195 18 1 -5.2124 -0.1232 1.2244 19 6 -6.2680 1.2939 2.4219 20 7 -6.5681 2.0697 1.4033 21 14 -6.8318 1.7519 4.1429 22 1 -5.7950 2.5902 4.7967 23 1 -8.1043 2.5131 4.0607 24 1 -7.0444 0.5167 4.9393 25 6 0.4731 -2.5182 1.7139 26 8 -0.2640 -1.6968 2.2310 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 3.4211 -2.6882 0.1913 37 1 2.8443 -5.0421 0.0707 38 1 0.6964 -5.8486 1.0168 39 1 -3.8421 -4.3995 2.5544 40 1 -3.0494 -4.6756 4.1240 41 1 -4.9553 -3.1722 4.4427 42 1 -3.4471 -2.2609 4.6940 43 1 -6.1125 -1.0973 3.8589 44 1 -4.6047 -0.1856 4.1107 45 1 -7.0820 2.8800 1.5458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909711912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:28 Heat of formation + Delta-G solvation = -162.424423 kcal Electronic energy + Delta-G solvation = -27847.334350 eV Core-core repulsion = 23829.770754 eV Total energy + Delta-G solvation = -4017.563596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62931 -41.13434 -38.86513 -38.13541 -37.55406 -37.09260 -34.93846 -34.42277 -32.01819 -31.07553 -29.60946 -28.25486 -27.92887 -26.36844 -24.11721 -23.81262 -23.65642 -22.40177 -21.21624 -19.50163 -19.16268 -18.63168 -17.94543 -17.71991 -17.65156 -17.24136 -16.81220 -16.77559 -16.42231 -16.30017 -15.69575 -15.44576 -15.00835 -14.71386 -14.57932 -14.28914 -14.05917 -13.89606 -13.56141 -13.50240 -13.29756 -13.27941 -13.06112 -13.04115 -12.93038 -12.68526 -12.36497 -12.13209 -11.95914 -11.87723 -11.79467 -11.71084 -11.67619 -11.40613 -11.05872 -10.98439 -10.93731 -10.45988 -9.07581 -8.41496 -6.50035 -0.66044 0.89651 1.28856 1.33490 1.36696 1.44363 1.49576 1.83047 2.26210 2.65554 2.90317 2.92161 3.47663 3.68304 3.75412 3.83524 3.84892 3.89802 3.92941 4.05149 4.10924 4.17773 4.31061 4.40152 4.41960 4.50374 4.51779 4.63136 4.65599 4.73259 4.80650 4.90863 4.93254 4.94111 5.04298 5.13564 5.19196 5.33575 5.37034 5.40150 5.42611 5.56321 5.86950 5.97280 6.52466 6.65523 6.75335 6.99756 7.13742 8.76336 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.003825 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.614746 B = 7319.219376 C = 9369.919031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.142 4.142 4 C 0.088 3.912 5 N -0.490 5.490 6 C 0.203 3.797 7 C -0.250 4.250 8 C 0.092 3.908 9 C -0.330 4.330 10 C 0.517 3.483 11 O -0.550 6.550 12 O -0.342 6.342 13 C 0.070 3.930 14 C 0.055 3.945 15 O -0.408 6.408 16 C 0.180 3.820 17 C -0.549 4.549 18 H 0.022 0.978 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.959 3.041 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.243 1.243 25 C 0.513 3.487 26 O -0.553 6.553 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.235 0.765 37 H 0.205 0.795 38 H 0.157 0.843 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.007 0.993 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.948 -11.296 -0.730 31.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.032 4.032 5 N -0.197 5.197 6 C 0.072 3.928 7 C -0.272 4.272 8 C 0.069 3.931 9 C -0.335 4.335 10 C 0.367 3.633 11 O -0.444 6.444 12 O -0.257 6.257 13 C -0.004 4.004 14 C -0.022 4.022 15 O -0.328 6.328 16 C 0.105 3.895 17 C -0.587 4.587 18 H 0.040 0.960 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.166 1.166 25 C 0.314 3.686 26 O -0.434 6.434 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.251 0.749 37 H 0.222 0.778 38 H 0.175 0.825 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.269 -10.852 -0.600 30.287 hybrid contribution -1.449 0.339 0.623 1.613 sum 26.820 -10.513 0.023 28.807 Atomic orbital electron populations 1.21839 0.97707 1.00005 1.00610 1.21486 0.93573 0.98423 0.98176 1.21762 1.02716 0.93435 1.02012 1.22497 1.03781 0.77062 0.99908 1.45810 1.16614 1.11528 1.45718 1.23473 0.94822 0.89312 0.85184 1.21193 0.99049 0.96021 1.10919 1.22381 0.89833 0.99869 0.80994 1.20064 0.98014 0.94997 1.20454 1.20928 0.84464 0.83274 0.74679 1.90756 1.76347 1.18768 1.58574 1.86920 1.30205 1.40400 1.68192 1.23226 0.81969 0.96001 0.99178 1.22705 0.98093 0.90610 0.90777 1.87947 1.74046 1.36291 1.34495 1.20349 0.90261 0.84301 0.94629 1.21132 1.35685 1.07672 0.94220 0.95995 1.25885 0.94731 0.94783 1.03006 1.70038 1.39829 1.14668 1.33553 0.85560 0.78716 0.79833 0.77923 1.18534 1.19129 1.16615 1.17110 0.81798 0.89197 0.80462 1.91080 1.51236 1.54565 1.46544 0.95116 0.93133 0.95724 0.88044 0.88746 0.92308 0.93730 0.90816 0.82749 0.74889 0.77790 0.82529 0.91543 0.87236 0.88654 0.92626 0.96059 0.97538 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 7.91 71.98 0.57 -3.94 16 2 C -0.10 -1.64 3.13 -10.79 -0.03 -1.67 16 3 C -0.14 -1.93 9.19 71.98 0.66 -1.26 16 4 C 0.09 1.26 4.92 86.38 0.43 1.69 16 5 N -0.49 -8.65 2.47 -649.64 -1.61 -10.25 16 6 C 0.20 1.18 10.25 83.57 0.86 2.03 16 7 C -0.25 -1.73 9.99 21.99 0.22 -1.51 16 8 C 0.09 1.66 9.70 22.84 0.22 1.89 16 9 C -0.33 -10.08 5.92 -19.80 -0.12 -10.20 16 10 C 0.52 20.10 7.88 70.10 0.55 20.66 16 11 O -0.55 -21.38 16.18 19.60 0.32 -21.06 16 12 O -0.34 -15.17 8.39 -49.40 -0.41 -15.59 16 13 C 0.07 2.68 5.86 71.98 0.42 3.10 16 14 C 0.05 2.23 6.33 71.98 0.46 2.68 16 15 O -0.41 -22.42 10.30 -145.57 -1.50 -23.91 16 16 C 0.18 10.13 4.76 71.23 0.34 10.47 16 17 C -0.55 -36.73 9.99 25.60 0.26 -36.47 16 18 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 19 C 0.01 0.87 5.47 84.66 0.46 1.33 16 20 N -0.94 -62.41 13.96 21.45 0.30 -62.11 16 21 Si 0.96 46.05 27.47 68.60 1.88 47.93 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.24 -10.70 6.54 99.48 0.65 -10.05 16 25 C 0.51 16.17 6.00 85.18 0.51 16.68 16 26 O -0.55 -23.98 12.88 15.61 0.20 -23.78 16 27 H 0.03 1.16 7.95 -2.39 -0.02 1.15 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.02 0.88 6.03 -2.39 -0.01 0.87 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 1.63 7.39 -2.39 -0.02 1.61 16 35 H 0.15 0.36 8.00 -2.38 -0.02 0.34 16 36 H 0.23 -1.70 8.02 -2.91 -0.02 -1.72 16 37 H 0.21 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.16 2.48 7.69 -2.91 -0.02 2.46 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.11 3.36 8.14 -2.39 -0.02 3.35 16 41 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 44 H 0.01 0.37 7.57 -2.39 -0.02 0.36 16 45 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -102.74 377.23 5.91 -96.84 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.92 Total: 6.47 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.80 Total: 5.47 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.31 Total: -72.36 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: -1.40 Total: -84.34 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -102.74 5.91 -96.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909711912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.588 kcal (2) G-P(sol) polarization free energy of solvation -102.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds