Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47321 * 2 1 4 4 C 1.53003 * 109.47102 * 240.00101 * 2 1 3 5 5 C 1.50699 * 109.46878 * 120.00386 * 2 1 3 6 6 C 1.34224 * 122.11234 * 75.00247 * 5 2 1 7 7 S 1.71079 * 109.09264 * 179.97438 * 6 5 2 8 8 C 1.76088 * 90.29856 * 359.97438 * 7 6 5 9 9 C 1.47260 * 125.53889 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00260 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00119 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00101 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.77828 * 323.21094 * 12 11 9 14 14 C 1.55159 * 110.72111 * 199.97366 * 12 11 9 15 15 C 1.55122 * 101.48670 * 205.96753 * 14 12 11 16 16 N 1.47423 * 104.72063 * 37.29860 * 15 14 12 17 17 C 1.36945 * 125.64659 * 155.81925 * 16 15 14 18 18 H 1.07996 * 119.99955 * 199.18383 * 17 16 15 19 19 C 1.38807 * 119.99963 * 19.18181 * 17 16 15 20 20 N 1.31622 * 120.00467 * 28.44676 * 19 17 16 21 21 Si 1.86809 * 119.99818 * 208.72664 * 19 17 16 22 22 H 1.48502 * 109.46859 * 179.72641 * 21 19 17 23 23 H 1.48500 * 109.46672 * 299.72508 * 21 19 17 24 24 H 1.48494 * 109.47163 * 59.72061 * 21 19 17 25 25 C 1.47015 * 108.70205 * 335.54859 * 16 15 14 26 26 N 1.30554 * 108.92216 * 0.23890 * 8 7 6 27 27 H 1.08997 * 109.47258 * 299.99550 * 1 2 3 28 28 H 1.08996 * 109.47248 * 60.00218 * 1 2 3 29 29 H 1.09007 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47383 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47171 * 300.00508 * 3 2 1 32 32 H 1.09003 * 109.47000 * 60.00079 * 3 2 1 33 33 H 1.08998 * 109.46925 * 299.99942 * 4 2 1 34 34 H 1.09005 * 109.46776 * 59.99868 * 4 2 1 35 35 H 1.08995 * 109.47067 * 179.97438 * 4 2 1 36 36 H 1.08001 * 125.45462 * 359.97438 * 6 5 2 37 37 H 0.97006 * 119.99851 * 0.02562 * 11 9 8 38 38 H 1.09008 * 111.00409 * 324.21144 * 14 12 11 39 39 H 1.09009 * 111.00336 * 88.02001 * 14 12 11 40 40 H 1.08995 * 110.50275 * 278.45104 * 15 14 12 41 41 H 1.09007 * 110.34131 * 156.06011 * 15 14 12 42 42 H 0.97002 * 119.99472 * 5.94034 * 20 19 17 43 43 H 1.09005 * 109.88112 * 120.71015 * 25 16 15 44 44 H 1.09002 * 109.88578 * 241.87084 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.9927 -2.0469 1.3488 7 16 2.6429 -2.4938 2.8668 8 6 2.9337 -0.8001 3.2511 9 6 3.5290 -0.2959 4.5001 10 8 3.6840 0.8997 4.6605 11 7 3.9021 -1.1592 5.4654 12 6 4.4937 -0.6575 6.7082 13 1 5.1352 0.2016 6.5117 14 6 5.2848 -1.7792 7.4316 15 6 5.2188 -1.3021 8.9061 16 7 3.8706 -0.7240 9.0528 17 6 3.1787 -0.6005 10.2282 18 1 2.1080 -0.4605 10.2123 19 6 3.8536 -0.6553 11.4399 20 7 5.1103 -0.2704 11.5113 21 14 2.9808 -1.2828 12.9676 22 1 3.9153 -1.2476 14.1212 23 1 1.8061 -0.4211 13.2556 24 1 2.5270 -2.6784 12.7404 25 6 3.3946 -0.2961 7.7293 26 7 2.5306 -0.0638 2.2512 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.6114 -2.7307 0.6048 37 1 3.7788 -2.1128 5.3374 38 1 4.7949 -2.7451 7.3075 39 1 6.3161 -1.8187 7.0807 40 1 5.9791 -0.5448 9.0967 41 1 5.3452 -2.1466 9.5837 42 1 5.5389 0.1317 10.7396 43 1 2.4711 -0.8191 7.4806 44 1 3.2255 0.7807 7.7264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014811602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = 25.609013 kcal Electronic energy + Delta-G solvation = -24712.255113 eV Core-core repulsion = 21177.890881 eV Total energy + Delta-G solvation = -3534.364232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78369 -39.59612 -37.47974 -36.24218 -34.32719 -32.15119 -30.48494 -29.21258 -28.15434 -27.62240 -27.27177 -25.87656 -24.32353 -22.88773 -20.81003 -20.42556 -20.00408 -19.32037 -18.24659 -17.52635 -16.97006 -16.31183 -15.71644 -15.57232 -14.81963 -14.60604 -14.38125 -14.20006 -13.84400 -13.73089 -13.55344 -13.25717 -13.06862 -12.64918 -12.55098 -12.43411 -12.34838 -11.96663 -11.80040 -11.31849 -11.27143 -11.26410 -11.12535 -10.88108 -10.71741 -10.55573 -10.44268 -10.20100 -10.01482 -9.97886 -9.78926 -9.56241 -9.14355 -8.94269 -8.39168 -6.94308 -6.10628 -3.16872 -0.01067 0.89092 1.30401 2.13243 2.74031 3.10911 3.50985 3.53875 3.72350 3.96599 4.40011 4.50756 4.61507 4.64073 4.76689 4.86661 4.98413 5.05577 5.18776 5.22996 5.36179 5.36785 5.42081 5.49236 5.54124 5.57554 5.62721 5.64951 5.71563 5.89255 5.90064 5.96861 6.06008 6.17825 6.21547 6.26115 6.65229 6.78231 6.86557 6.97820 7.22287 7.49220 7.80660 8.05885 8.48774 9.01097 9.80321 10.34967 11.21373 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.002450 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.925693 B =11424.757393 C =11471.500100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 C -0.132 4.132 4 C -0.139 4.139 5 C 0.070 3.930 6 C -0.264 4.264 7 S 0.175 5.825 8 C 0.005 3.995 9 C 0.592 3.408 10 O -0.495 6.495 11 N -0.706 5.706 12 C 0.134 3.866 13 H 0.098 0.902 14 C -0.141 4.141 15 C 0.146 3.854 16 N -0.600 5.600 17 C -0.337 4.337 18 H 0.064 0.936 19 C -0.025 4.025 20 N -0.914 5.914 21 Si 1.065 2.935 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.126 3.874 26 N -0.391 5.391 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.183 0.817 37 H 0.397 0.603 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.269 0.731 43 H 0.029 0.971 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -6.958 -25.970 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.001 3.999 3 C -0.190 4.190 4 C -0.197 4.197 5 C -0.068 4.068 6 C -0.405 4.405 7 S 0.431 5.569 8 C -0.271 4.271 9 C 0.372 3.628 10 O -0.368 6.368 11 N -0.358 5.358 12 C 0.030 3.970 13 H 0.116 0.884 14 C -0.180 4.180 15 C 0.020 3.980 16 N -0.328 5.328 17 C -0.465 4.465 18 H 0.082 0.918 19 C -0.227 4.227 20 N -0.554 5.554 21 Si 0.895 3.105 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.001 4.001 26 N -0.106 5.106 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.200 0.800 37 H 0.231 0.769 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.616 -6.810 -23.516 24.913 hybrid contribution -0.752 0.281 -2.572 2.695 sum -5.368 -6.529 -26.088 27.423 Atomic orbital electron populations 1.21897 0.93093 1.02074 1.02535 1.19221 0.95649 0.95700 0.89374 1.21736 1.01436 0.93716 1.02083 1.21933 1.01467 1.00024 0.96267 1.20243 1.00935 0.89623 0.95961 1.26441 1.10385 1.00248 1.03399 1.83853 1.52773 1.10533 1.09780 1.27577 1.07911 0.91929 0.99726 1.16708 0.78716 0.86361 0.80982 1.90878 1.52742 1.14593 1.78624 1.45850 1.63381 1.09378 1.17228 1.22177 0.95348 0.97917 0.81538 0.88370 1.23172 0.99258 0.97365 0.98176 1.21564 0.88525 0.96652 0.91301 1.44521 1.16450 1.69398 1.02443 1.19722 0.91396 1.51854 0.83536 0.91819 1.25799 0.97650 0.99594 0.99620 1.70790 1.14014 1.38066 1.32539 0.83520 0.74818 0.76319 0.75863 1.21060 1.21972 1.22094 1.21672 0.94629 0.97692 0.86080 1.66457 1.08628 1.36568 0.98983 0.92149 0.91679 0.92514 0.92408 0.92578 0.91432 0.92451 0.91622 0.92281 0.80017 0.76859 0.91035 0.90957 0.95085 0.92618 0.92012 0.95357 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.42 37.16 0.31 -0.71 16 2 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 3 C -0.13 -1.26 7.90 37.16 0.29 -0.97 16 4 C -0.14 -0.88 8.12 37.16 0.30 -0.58 16 5 C 0.07 0.76 5.38 -84.48 -0.45 0.30 16 6 C -0.26 -2.27 10.10 29.32 0.30 -1.98 16 7 S 0.18 1.60 22.31 -107.50 -2.40 -0.80 16 8 C 0.01 0.07 7.46 -14.43 -0.11 -0.03 16 9 C 0.59 9.56 7.81 -12.59 -0.10 9.46 16 10 O -0.50 -10.03 16.80 5.26 0.09 -9.94 16 11 N -0.71 -10.24 5.13 -53.16 -0.27 -10.51 16 12 C 0.13 2.36 3.23 -66.10 -0.21 2.14 16 13 H 0.10 1.82 7.70 -51.93 -0.40 1.42 16 14 C -0.14 -2.33 6.71 -24.47 -0.16 -2.50 16 15 C 0.15 3.27 5.38 -2.41 -0.01 3.26 16 16 N -0.60 -15.35 3.26 -169.95 -0.55 -15.90 16 17 C -0.34 -9.65 10.00 -15.06 -0.15 -9.80 16 18 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 19 C -0.02 -0.70 5.09 -17.43 -0.09 -0.79 16 20 N -0.91 -27.62 13.00 55.49 0.72 -26.89 16 21 Si 1.07 25.39 30.01 -169.99 -5.10 20.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.13 2.77 6.99 -3.07 -0.02 2.74 16 26 N -0.39 -5.49 9.53 -7.69 -0.07 -5.57 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 33 H 0.06 0.29 7.07 -51.93 -0.37 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.18 1.02 7.23 -52.49 -0.38 0.64 16 37 H 0.40 4.57 7.66 -40.82 -0.31 4.26 16 38 H 0.07 1.07 8.00 -51.92 -0.42 0.66 16 39 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16 41 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.27 8.15 6.19 -40.82 -0.25 7.89 16 43 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -34.27 370.79 -9.00 -43.27 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.75 Total: 0.04 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.25 Total: 0.44 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.18 Total: -58.88 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.40 Total: -0.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.27 -9.00 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014811602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.878 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds