Wall clock time and date at job start Tue Mar 31 2020 13:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47321 * 2 1 4 4 C 1.53003 * 109.47102 * 240.00101 * 2 1 3 5 5 C 1.50699 * 109.46878 * 120.00386 * 2 1 3 6 6 C 1.34224 * 122.11234 * 75.00247 * 5 2 1 7 7 S 1.71079 * 109.09264 * 179.97438 * 6 5 2 8 8 C 1.76088 * 90.29856 * 359.97438 * 7 6 5 9 9 C 1.47260 * 125.53889 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00260 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00119 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00101 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.77828 * 323.21094 * 12 11 9 14 14 C 1.55159 * 110.72111 * 199.97366 * 12 11 9 15 15 C 1.55122 * 101.48670 * 205.96753 * 14 12 11 16 16 N 1.47423 * 104.72063 * 37.29860 * 15 14 12 17 17 C 1.36945 * 125.64659 * 155.81925 * 16 15 14 18 18 H 1.07996 * 119.99955 * 199.18383 * 17 16 15 19 19 C 1.38807 * 119.99963 * 19.18181 * 17 16 15 20 20 N 1.31622 * 120.00467 * 28.44676 * 19 17 16 21 21 Si 1.86809 * 119.99818 * 208.72664 * 19 17 16 22 22 H 1.48502 * 109.46859 * 179.72641 * 21 19 17 23 23 H 1.48500 * 109.46672 * 299.72508 * 21 19 17 24 24 H 1.48494 * 109.47163 * 59.72061 * 21 19 17 25 25 C 1.47015 * 108.70205 * 335.54859 * 16 15 14 26 26 N 1.30554 * 108.92216 * 0.23890 * 8 7 6 27 27 H 1.08997 * 109.47258 * 299.99550 * 1 2 3 28 28 H 1.08996 * 109.47248 * 60.00218 * 1 2 3 29 29 H 1.09007 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47383 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47171 * 300.00508 * 3 2 1 32 32 H 1.09003 * 109.47000 * 60.00079 * 3 2 1 33 33 H 1.08998 * 109.46925 * 299.99942 * 4 2 1 34 34 H 1.09005 * 109.46776 * 59.99868 * 4 2 1 35 35 H 1.08995 * 109.47067 * 179.97438 * 4 2 1 36 36 H 1.08001 * 125.45462 * 359.97438 * 6 5 2 37 37 H 0.97006 * 119.99851 * 0.02562 * 11 9 8 38 38 H 1.09008 * 111.00409 * 324.21144 * 14 12 11 39 39 H 1.09009 * 111.00336 * 88.02001 * 14 12 11 40 40 H 1.08995 * 110.50275 * 278.45104 * 15 14 12 41 41 H 1.09007 * 110.34131 * 156.06011 * 15 14 12 42 42 H 0.97002 * 119.99472 * 5.94034 * 20 19 17 43 43 H 1.09005 * 109.88112 * 120.71015 * 25 16 15 44 44 H 1.09002 * 109.88578 * 241.87084 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.9927 -2.0469 1.3488 7 16 2.6429 -2.4938 2.8668 8 6 2.9337 -0.8001 3.2511 9 6 3.5290 -0.2959 4.5001 10 8 3.6840 0.8997 4.6605 11 7 3.9021 -1.1592 5.4654 12 6 4.4937 -0.6575 6.7082 13 1 5.1352 0.2016 6.5117 14 6 5.2848 -1.7792 7.4316 15 6 5.2188 -1.3021 8.9061 16 7 3.8706 -0.7240 9.0528 17 6 3.1787 -0.6005 10.2282 18 1 2.1080 -0.4605 10.2123 19 6 3.8536 -0.6553 11.4399 20 7 5.1103 -0.2704 11.5113 21 14 2.9808 -1.2828 12.9676 22 1 3.9153 -1.2476 14.1212 23 1 1.8061 -0.4211 13.2556 24 1 2.5270 -2.6784 12.7404 25 6 3.3946 -0.2961 7.7293 26 7 2.5306 -0.0638 2.2512 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.6114 -2.7307 0.6048 37 1 3.7788 -2.1128 5.3374 38 1 4.7949 -2.7451 7.3075 39 1 6.3161 -1.8187 7.0807 40 1 5.9791 -0.5448 9.0967 41 1 5.3452 -2.1466 9.5837 42 1 5.5389 0.1317 10.7396 43 1 2.4711 -0.8191 7.4806 44 1 3.2255 0.7807 7.7264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014811602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:34 Heat of formation + Delta-G solvation = 1.939603 kcal Electronic energy + Delta-G solvation = -24713.281496 eV Core-core repulsion = 21177.890881 eV Total energy + Delta-G solvation = -3535.390615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69724 -40.83999 -39.10585 -36.98209 -35.95683 -34.00592 -31.45788 -30.93057 -29.44361 -28.30988 -28.14728 -27.00119 -26.14066 -23.92955 -22.42393 -21.85650 -21.37008 -20.18274 -19.63525 -19.04640 -17.97117 -17.69450 -16.73342 -16.61633 -16.26670 -15.99852 -15.67415 -15.44687 -15.15172 -14.84780 -14.76476 -14.57548 -14.38798 -14.08822 -13.57778 -13.33218 -13.08572 -13.01573 -12.77981 -12.64674 -12.58174 -12.57285 -12.48777 -11.94998 -11.91598 -11.89968 -11.82201 -11.80379 -11.61768 -11.58913 -10.77999 -10.77239 -10.61363 -10.39790 -9.79505 -9.07290 -8.36669 -5.40796 -0.88428 0.06087 0.52643 1.18535 1.55818 1.58838 1.65789 1.85547 2.02750 2.62715 3.11036 3.14456 3.45453 3.54248 3.64869 3.80490 3.82829 4.03425 4.05391 4.13901 4.24086 4.28566 4.33532 4.47153 4.72925 4.74779 4.76862 4.79368 4.80564 4.87661 4.87815 4.99899 5.00410 5.00892 5.14035 5.18794 5.29209 5.29658 5.39665 5.43378 5.64197 6.12363 6.27751 6.60282 6.82998 6.88747 7.64959 8.21853 8.93739 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.002450 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.925693 B =11424.757393 C =11471.500100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 C -0.130 4.130 4 C -0.135 4.135 5 C 0.046 3.954 6 C -0.244 4.244 7 S 0.262 5.738 8 C -0.051 4.051 9 C 0.593 3.407 10 O -0.552 6.552 11 N -0.690 5.690 12 C 0.151 3.849 13 H 0.086 0.914 14 C -0.115 4.115 15 C 0.144 3.856 16 N -0.621 5.621 17 C -0.353 4.353 18 H 0.054 0.946 19 C -0.074 4.074 20 N -0.938 5.938 21 Si 1.119 2.881 22 H -0.289 1.289 23 H -0.278 1.278 24 H -0.275 1.275 25 C 0.125 3.875 26 N -0.423 5.423 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.222 0.778 37 H 0.415 0.585 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.009 0.991 41 H 0.036 0.964 42 H 0.255 0.745 43 H 0.032 0.968 44 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -10.452 -28.459 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.187 4.187 4 C -0.192 4.192 5 C -0.092 4.092 6 C -0.385 4.385 7 S 0.517 5.483 8 C -0.325 4.325 9 C 0.376 3.624 10 O -0.428 6.428 11 N -0.343 5.343 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.154 4.154 15 C 0.018 3.982 16 N -0.349 5.349 17 C -0.482 4.482 18 H 0.072 0.928 19 C -0.270 4.270 20 N -0.580 5.580 21 Si 0.943 3.057 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.201 1.201 25 C -0.001 4.001 26 N -0.141 5.141 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.239 0.761 37 H 0.253 0.747 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.027 0.973 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.704 -10.347 -26.036 28.591 hybrid contribution -0.488 1.348 -1.921 2.397 sum -6.193 -8.999 -27.957 30.015 Atomic orbital electron populations 1.21884 0.92176 1.03005 1.02214 1.19344 0.96330 0.94747 0.89698 1.21699 1.00366 0.95099 1.01576 1.21915 1.00946 1.01024 0.95328 1.20595 1.01806 0.90738 0.96067 1.27025 1.07679 0.99979 1.03816 1.83479 1.50367 1.05643 1.08850 1.26953 1.11210 0.95124 0.99170 1.17121 0.77648 0.85700 0.81884 1.90838 1.55026 1.16964 1.80017 1.45522 1.62847 1.10180 1.15747 1.21747 0.93636 0.98301 0.81755 0.89590 1.23056 1.01547 0.97581 0.93202 1.21555 0.86431 0.95205 0.95006 1.44798 1.17407 1.69896 1.02755 1.19979 0.91416 1.51608 0.85179 0.92789 1.27283 0.97725 0.99300 1.02725 1.70911 1.15068 1.39957 1.32068 0.82818 0.74067 0.76788 0.72074 1.21462 1.20408 1.20083 1.21722 0.96459 0.95721 0.86238 1.66415 1.08982 1.38751 0.99911 0.94443 0.90073 0.90897 0.93986 0.90588 0.94332 0.90416 0.90252 0.93103 0.76137 0.74701 0.88323 0.87355 0.97319 0.94542 0.93518 0.94957 0.98341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.42 71.98 0.61 -1.11 16 2 C 0.00 0.02 0.90 -52.93 -0.05 -0.02 16 3 C -0.13 -2.51 7.90 71.98 0.57 -1.94 16 4 C -0.13 -1.27 8.12 71.98 0.58 -0.68 16 5 C 0.05 0.92 5.38 41.81 0.22 1.14 16 6 C -0.24 -3.24 10.10 66.90 0.68 -2.57 16 7 S 0.26 3.87 22.31 -56.49 -1.26 2.61 16 8 C -0.05 -1.37 7.46 87.26 0.65 -0.71 16 9 C 0.59 19.54 7.81 86.62 0.68 20.22 16 10 O -0.55 -23.72 16.80 -4.10 -0.07 -23.79 16 11 N -0.69 -19.43 5.13 -440.34 -2.26 -21.69 16 12 C 0.15 5.31 3.23 46.18 0.15 5.46 16 13 H 0.09 3.29 7.70 -2.39 -0.02 3.27 16 14 C -0.12 -3.62 6.71 32.06 0.21 -3.41 16 15 C 0.14 6.57 5.38 86.93 0.47 7.04 16 16 N -0.62 -32.68 3.26 -691.59 -2.26 -34.94 16 17 C -0.35 -20.76 10.00 84.03 0.84 -19.92 16 18 H 0.05 3.20 7.97 -2.91 -0.02 3.17 16 19 C -0.07 -4.31 5.09 84.86 0.43 -3.88 16 20 N -0.94 -58.33 13.00 21.65 0.28 -58.05 16 21 Si 1.12 51.55 30.01 68.60 2.06 53.60 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.13 5.69 6.99 86.73 0.61 6.29 16 26 N -0.42 -11.99 9.53 -178.25 -1.70 -13.69 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.04 0.94 7.95 -2.39 -0.02 0.93 16 33 H 0.08 0.42 7.07 -2.39 -0.02 0.40 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.22 1.12 7.23 -2.91 -0.02 1.10 16 37 H 0.42 8.49 7.66 -92.70 -0.71 7.78 16 38 H 0.10 2.61 8.00 -2.38 -0.02 2.59 16 39 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.01 0.45 6.81 -2.39 -0.02 0.43 16 41 H 0.04 1.78 8.07 -2.38 -0.02 1.77 16 42 H 0.25 16.14 6.19 -92.71 -0.57 15.57 16 43 H 0.03 1.43 8.03 -2.38 -0.02 1.42 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -80.98 370.79 1.94 -79.04 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.49 Total: 11.00 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 6.65 Total: 5.90 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.93 Total: -128.37 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.07 Total: -23.79 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.06 Total: 53.60 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.26 Total: 2.61 kcal Total: -80.98 1.94 -79.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014811602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.978 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds