Wall clock time and date at job start Tue Mar 31 2020 13:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80223 * 90.02070 * 4 3 2 6 6 C 1.30943 * 117.36258 * 179.97438 * 5 4 3 7 7 C 1.50699 * 122.90461 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19380 * 0.02562 * 6 5 4 9 9 C 1.46675 * 126.13200 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99989 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00034 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00248 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47574 * 180.02562 * 12 11 9 14 14 C 1.53947 * 113.73927 * 273.74343 * 13 12 11 15 15 N 1.47815 * 86.03173 * 222.08060 * 14 13 12 16 16 C 1.36940 * 134.45527 * 204.64420 * 15 14 13 17 17 H 1.07998 * 120.00048 * 179.86941 * 16 15 14 18 18 C 1.38816 * 119.99502 * 359.87015 * 16 15 14 19 19 N 1.31611 * 120.00305 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99483 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46888 * 119.99736 * 20 18 16 23 23 H 1.48496 * 109.46926 * 239.99702 * 20 18 16 24 24 C 1.47578 * 91.05335 * 24.54781 * 15 14 13 25 25 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.09000 * 109.47356 * 90.02321 * 7 6 5 34 34 H 1.09003 * 109.47102 * 210.02441 * 7 6 5 35 35 H 1.08999 * 109.46901 * 330.02574 * 7 6 5 36 36 H 0.96997 * 120.00082 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47155 * 300.00488 * 12 11 9 38 38 H 1.08999 * 109.47456 * 60.00137 * 12 11 9 39 39 H 1.09004 * 112.93794 * 45.33400 * 13 12 11 40 40 H 1.09000 * 113.76827 * 336.34437 * 14 13 12 41 41 H 1.09000 * 113.76330 * 107.74225 * 14 13 12 42 42 H 0.97002 * 120.00164 * 180.02562 * 19 18 16 43 43 H 1.08994 * 113.77604 * 221.14813 * 24 15 14 44 44 H 1.09004 * 113.76855 * 89.75261 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0638 6 6 5.5837 1.4437 -0.8948 7 6 6.5588 1.4450 -2.0438 8 6 5.9753 1.4430 0.4041 9 6 7.3592 1.4439 0.8902 10 8 8.2825 1.4449 0.0976 11 7 7.6082 1.4435 2.2148 12 6 8.9904 1.4438 2.7003 13 6 8.9936 1.4427 4.2304 14 6 8.9022 2.8484 4.8514 15 7 9.9254 2.3796 5.8096 16 6 10.2850 2.7393 7.0810 17 1 11.0915 2.2231 7.5805 18 6 9.6129 3.7673 7.7277 19 7 8.6297 4.3960 7.1192 20 14 10.1030 4.2575 9.4624 21 1 11.2280 3.4026 9.9192 22 1 10.5272 5.6806 9.4735 23 1 8.9437 4.0794 10.3733 24 6 10.4020 1.3673 4.8472 25 16 4.5233 1.4492 1.4026 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 6.7938 2.4729 -2.3198 34 1 7.4726 0.9310 -1.7454 35 1 6.1154 0.9319 -2.8971 36 1 6.8723 1.4423 2.8466 37 1 9.5038 0.5541 2.3356 38 1 9.5032 2.3341 2.3363 39 1 8.2891 0.7281 4.6562 40 1 9.2495 3.6435 4.1917 41 1 7.9367 3.0646 5.3087 42 1 8.1603 5.1146 7.5710 43 1 10.6318 0.4034 5.3012 44 1 11.1908 1.7264 4.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032184842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:33 Heat of formation + Delta-G solvation = 44.330080 kcal Electronic energy + Delta-G solvation = -24097.359121 eV Core-core repulsion = 20563.806694 eV Total energy + Delta-G solvation = -3533.552426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51325 -39.28390 -37.95428 -35.66316 -34.51378 -32.24420 -31.95874 -29.54247 -28.48685 -27.95811 -25.72299 -24.81746 -23.64690 -22.41698 -21.70539 -21.38271 -19.93396 -18.80105 -18.11982 -17.03470 -16.65190 -15.86037 -15.72035 -15.39828 -15.07020 -14.94409 -14.62548 -14.19523 -13.88781 -13.82754 -13.62235 -13.34462 -12.92215 -12.75366 -12.53716 -12.51756 -12.35305 -12.01302 -11.63049 -11.50122 -11.43588 -11.36409 -11.17889 -11.03180 -10.75606 -10.59622 -10.16615 -9.97885 -9.80295 -9.72862 -9.68848 -9.46664 -9.03025 -8.83313 -8.80126 -6.90610 -5.79390 -3.11603 0.06023 0.97030 1.38490 2.27516 3.12456 3.17176 3.37114 3.42595 3.45039 3.68873 4.42910 4.44317 4.55412 4.59518 4.74810 4.93548 5.03418 5.10686 5.15104 5.26040 5.26715 5.33291 5.34729 5.55846 5.58729 5.61877 5.67363 5.69254 5.76719 5.78931 5.84655 5.97490 6.16255 6.22365 6.32166 6.48691 6.59418 6.69564 7.18599 7.31505 7.38245 7.51353 7.53379 7.95365 8.15193 9.02234 9.68456 10.57039 11.37850 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002569 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.272934 B =10895.153798 C =12213.617086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.047 4.047 4 C 0.063 3.937 5 N -0.477 5.477 6 C 0.147 3.853 7 C -0.089 4.089 8 C -0.297 4.297 9 C 0.594 3.406 10 O -0.528 6.528 11 N -0.715 5.715 12 C 0.131 3.869 13 C -0.155 4.155 14 C 0.168 3.832 15 N -0.613 5.613 16 C -0.222 4.222 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 S 0.167 5.833 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.046 0.954 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 -8.652 -16.056 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.213 4.213 5 N -0.192 5.192 6 C 0.009 3.991 7 C -0.148 4.148 8 C -0.421 4.421 9 C 0.379 3.621 10 O -0.407 6.407 11 N -0.365 5.365 12 C 0.007 3.993 13 C -0.175 4.175 14 C 0.043 3.957 15 N -0.339 5.339 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.003 3.997 25 S 0.425 5.575 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.655 -8.445 -15.659 23.050 hybrid contribution 0.476 0.528 0.610 0.937 sum -14.179 -7.917 -15.049 22.141 Atomic orbital electron populations 1.21760 0.94745 1.02204 1.02188 1.21543 0.96440 0.94748 1.03073 1.20429 0.84442 0.99172 1.04774 1.27388 1.01730 1.00866 0.91287 1.66082 1.04400 1.17433 1.31294 1.20664 0.89844 0.94896 0.93703 1.20658 0.96960 1.03745 0.93392 1.25533 0.98131 1.21237 0.97240 1.16664 0.85832 0.76826 0.82753 1.90772 1.44322 1.50727 1.54890 1.45974 1.10271 1.74395 1.05882 1.21532 0.80904 1.02124 0.94712 1.23835 1.00246 1.02347 0.91068 1.22360 0.95104 0.89818 0.88418 1.45989 1.38378 1.38827 1.10713 1.19079 1.14256 1.13993 0.87636 0.90168 1.24789 0.98645 0.98430 0.98692 1.69818 1.24383 1.25748 1.36934 0.86047 0.77657 0.78111 0.83950 1.20450 1.21745 1.21691 1.22476 0.92869 0.93614 0.90743 1.84023 0.96381 1.65968 1.11123 0.92238 0.92354 0.92370 0.91478 0.91142 0.88418 0.89175 0.90109 0.88086 0.90917 0.76650 0.91545 0.90989 0.89186 0.95431 0.90957 0.93707 0.93586 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 3 C -0.05 -0.33 5.79 -27.89 -0.16 -0.49 16 4 C 0.06 0.64 6.64 -13.29 -0.09 0.55 16 5 N -0.48 -5.85 10.50 -7.70 -0.08 -5.93 16 6 C 0.15 1.91 6.79 -83.89 -0.57 1.34 16 7 C -0.09 -1.03 9.69 36.01 0.35 -0.68 16 8 C -0.30 -3.94 6.48 -37.10 -0.24 -4.19 16 9 C 0.59 8.94 7.78 -12.85 -0.10 8.84 16 10 O -0.53 -9.10 14.27 5.20 0.07 -9.03 16 11 N -0.71 -10.22 5.55 -61.62 -0.34 -10.56 16 12 C 0.13 2.02 5.51 -4.04 -0.02 1.99 16 13 C -0.16 -2.74 3.93 -89.69 -0.35 -3.09 16 14 C 0.17 3.84 7.08 -2.84 -0.02 3.82 16 15 N -0.61 -15.58 3.70 -177.72 -0.66 -16.23 16 16 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 20 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.13 2.57 8.51 -2.97 -0.03 2.55 16 25 S 0.17 1.74 22.31 -107.50 -2.40 -0.66 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.29 6.01 -51.93 -0.31 0.98 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.40 5.16 7.66 -40.82 -0.31 4.85 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -32.77 377.40 -10.24 -43.02 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.86 Total: 0.48 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.28 Total: 2.67 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.45 Total: -59.18 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.77 -10.24 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032184842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.346 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds