Wall clock time and date at job start Tue Mar 31 2020 13:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.29435 * 124.80223 * 90.02070 * 4 3 2 6 6 C 1.30943 * 117.36258 * 179.97438 * 5 4 3 7 7 C 1.50699 * 122.90461 * 180.02562 * 6 5 4 8 8 C 1.35666 * 114.19380 * 0.02562 * 6 5 4 9 9 C 1.46675 * 126.13200 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99989 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00034 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00248 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47574 * 180.02562 * 12 11 9 14 14 C 1.53947 * 113.73927 * 273.74343 * 13 12 11 15 15 N 1.47815 * 86.03173 * 222.08060 * 14 13 12 16 16 C 1.36940 * 134.45527 * 204.64420 * 15 14 13 17 17 H 1.07998 * 120.00048 * 179.86941 * 16 15 14 18 18 C 1.38816 * 119.99502 * 359.87015 * 16 15 14 19 19 N 1.31611 * 120.00305 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99483 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46888 * 119.99736 * 20 18 16 23 23 H 1.48496 * 109.46926 * 239.99702 * 20 18 16 24 24 C 1.47578 * 91.05335 * 24.54781 * 15 14 13 25 25 S 1.70952 * 124.80553 * 269.72259 * 4 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.09000 * 109.47356 * 90.02321 * 7 6 5 34 34 H 1.09003 * 109.47102 * 210.02441 * 7 6 5 35 35 H 1.08999 * 109.46901 * 330.02574 * 7 6 5 36 36 H 0.96997 * 120.00082 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.47155 * 300.00488 * 12 11 9 38 38 H 1.08999 * 109.47456 * 60.00137 * 12 11 9 39 39 H 1.09004 * 112.93794 * 45.33400 * 13 12 11 40 40 H 1.09000 * 113.76827 * 336.34437 * 14 13 12 41 41 H 1.09000 * 113.76330 * 107.74225 * 14 13 12 42 42 H 0.97002 * 120.00164 * 180.02562 * 19 18 16 43 43 H 1.08994 * 113.77604 * 221.14813 * 24 15 14 44 44 H 1.09004 * 113.76855 * 89.75261 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2852 1.4432 -1.0638 6 6 5.5837 1.4437 -0.8948 7 6 6.5588 1.4450 -2.0438 8 6 5.9753 1.4430 0.4041 9 6 7.3592 1.4439 0.8902 10 8 8.2825 1.4449 0.0976 11 7 7.6082 1.4435 2.2148 12 6 8.9904 1.4438 2.7003 13 6 8.9936 1.4427 4.2304 14 6 8.9022 2.8484 4.8514 15 7 9.9254 2.3796 5.8096 16 6 10.2850 2.7393 7.0810 17 1 11.0915 2.2231 7.5805 18 6 9.6129 3.7673 7.7277 19 7 8.6297 4.3960 7.1192 20 14 10.1030 4.2575 9.4624 21 1 11.2280 3.4026 9.9192 22 1 10.5272 5.6806 9.4735 23 1 8.9437 4.0794 10.3733 24 6 10.4020 1.3673 4.8472 25 16 4.5233 1.4492 1.4026 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 6.7938 2.4729 -2.3198 34 1 7.4726 0.9310 -1.7454 35 1 6.1154 0.9319 -2.8971 36 1 6.8723 1.4423 2.8466 37 1 9.5038 0.5541 2.3356 38 1 9.5032 2.3341 2.3363 39 1 8.2891 0.7281 4.6562 40 1 9.2495 3.6435 4.1917 41 1 7.9367 3.0646 5.3087 42 1 8.1603 5.1146 7.5710 43 1 10.6318 0.4034 5.3012 44 1 11.1908 1.7264 4.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032184842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:33 Heat of formation + Delta-G solvation = 23.467422 kcal Electronic energy + Delta-G solvation = -24098.263793 eV Core-core repulsion = 20563.806694 eV Total energy + Delta-G solvation = -3534.457099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50828 -40.47732 -39.53312 -36.25840 -35.84565 -34.20253 -32.80799 -30.99624 -29.37944 -29.06662 -27.32627 -26.54612 -24.37897 -24.01776 -22.61337 -22.25586 -21.26277 -20.16616 -19.03668 -18.75604 -17.98075 -17.02814 -16.99696 -16.70172 -16.10415 -15.96765 -15.78531 -15.59867 -15.19590 -14.82938 -14.70252 -14.50741 -14.29936 -13.98495 -13.56527 -13.34449 -13.29483 -13.10981 -13.01491 -12.89881 -12.57586 -12.54153 -12.39809 -12.23434 -12.10582 -11.82915 -11.65269 -11.59852 -11.31951 -11.14502 -10.88536 -10.75788 -10.62417 -10.17528 -9.76383 -8.92399 -7.91073 -5.24295 -0.85622 0.10322 0.49498 1.31311 1.45668 1.46581 1.56779 1.99699 2.04562 2.47042 2.90724 3.29734 3.37689 3.66204 3.74708 3.76172 3.97369 4.06010 4.07482 4.10860 4.32921 4.46259 4.56726 4.65510 4.68078 4.72906 4.76271 4.79638 4.83548 4.85497 4.88205 4.93872 5.07194 5.19522 5.23424 5.25365 5.27956 5.36890 5.44960 5.53462 5.62723 5.93448 6.31496 6.54939 6.92064 7.00023 7.60450 8.55801 9.25959 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002569 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.272934 B =10895.153798 C =12213.617086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.049 4.049 4 C 0.072 3.928 5 N -0.497 5.497 6 C 0.143 3.857 7 C -0.086 4.086 8 C -0.329 4.329 9 C 0.595 3.405 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.143 3.857 13 C -0.118 4.118 14 C 0.165 3.835 15 N -0.646 5.646 16 C -0.234 4.234 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.265 1.265 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.128 3.872 25 S 0.199 5.801 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.406 0.594 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.012 0.988 41 H 0.044 0.956 42 H 0.248 0.752 43 H 0.064 0.936 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 -9.711 -16.010 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.090 4.090 4 C -0.203 4.203 5 N -0.213 5.213 6 C 0.004 3.996 7 C -0.145 4.145 8 C -0.453 4.453 9 C 0.382 3.618 10 O -0.436 6.436 11 N -0.362 5.362 12 C 0.019 3.981 13 C -0.137 4.137 14 C 0.040 3.960 15 N -0.372 5.372 16 C -0.362 4.362 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.217 1.217 24 C 0.003 3.997 25 S 0.458 5.542 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.700 -9.537 -15.614 24.109 hybrid contribution 0.745 0.834 0.544 1.243 sum -14.955 -8.703 -15.070 22.946 Atomic orbital electron populations 1.21745 0.93489 1.02625 1.02779 1.21520 0.97449 0.93948 1.02575 1.20660 0.82110 1.00028 1.06158 1.28045 1.03057 0.98375 0.90822 1.66158 1.04110 1.18880 1.32114 1.20905 0.90487 0.94192 0.93980 1.20628 0.96343 1.03864 0.93653 1.25403 0.98276 1.23516 0.98139 1.16853 0.86426 0.76086 0.82480 1.90752 1.45428 1.52010 1.55459 1.45872 1.10000 1.74356 1.06021 1.21302 0.81697 1.02364 0.92777 1.23434 0.99149 0.98783 0.92356 1.22274 0.93238 0.92342 0.88170 1.46414 1.39624 1.40201 1.10998 1.19472 1.13885 1.13742 0.89115 0.89828 1.25630 0.99048 0.98904 1.02599 1.69999 1.25580 1.26252 1.38362 0.85012 0.77536 0.77373 0.79411 1.18973 1.22192 1.21668 1.22683 0.94202 0.93018 0.89804 1.83862 0.94680 1.65359 1.10281 0.91946 0.91576 0.91983 0.91448 0.92231 0.87675 0.87123 0.89879 0.89408 0.89469 0.75843 0.89848 0.92228 0.87831 0.97002 0.93728 0.94289 0.91796 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 3 C -0.05 -0.56 5.79 29.85 0.17 -0.39 16 4 C 0.07 1.34 6.64 88.46 0.59 1.93 16 5 N -0.50 -11.66 10.50 -178.28 -1.87 -13.53 16 6 C 0.14 3.66 6.79 42.09 0.29 3.95 16 7 C -0.09 -1.99 9.69 71.24 0.69 -1.30 16 8 C -0.33 -8.56 6.48 23.88 0.15 -8.40 16 9 C 0.60 17.71 7.78 86.45 0.67 18.38 16 10 O -0.56 -19.17 14.27 -4.31 -0.06 -19.24 16 11 N -0.71 -19.75 5.55 -467.08 -2.59 -22.35 16 12 C 0.14 4.22 5.51 86.38 0.48 4.70 16 13 C -0.12 -4.01 3.93 -10.13 -0.04 -4.05 16 14 C 0.17 7.62 7.08 86.44 0.61 8.24 16 15 N -0.65 -32.77 3.70 -716.19 -2.65 -35.42 16 16 C -0.23 -13.08 10.70 84.03 0.90 -12.18 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.95 -57.14 11.39 21.65 0.25 -56.89 16 20 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 C 0.13 4.90 8.51 86.48 0.74 5.63 16 25 S 0.20 3.87 22.31 -56.49 -1.26 2.61 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.28 6.01 -2.39 -0.01 2.26 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.41 10.09 7.66 -92.71 -0.71 9.38 16 37 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.06 1.95 7.88 -2.39 -0.02 1.93 16 39 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 40 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 41 H 0.04 2.29 7.16 -2.39 -0.02 2.27 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -70.91 377.40 0.74 -70.17 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.30 Total: 15.41 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.61 Total: 11.64 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -6.87 Total: -128.19 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.06 Total: -19.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.26 Total: 2.61 kcal Total: -70.91 0.74 -70.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032184842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.634 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds