Wall clock time and date at job start Tue Mar 31 2020 13:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46986 * 2 1 4 4 C 1.50704 * 109.47070 * 120.00157 * 2 1 3 5 5 S 1.70953 * 125.58458 * 305.11642 * 4 2 1 6 6 C 1.70768 * 91.12644 * 180.20021 * 5 4 2 7 7 N 1.28648 * 110.56292 * 359.80882 * 6 5 4 8 8 C 1.33563 * 115.76339 * 359.97438 * 7 6 5 9 9 C 1.47264 * 123.13870 * 180.02562 * 8 7 6 10 10 O 1.21636 * 119.99865 * 256.08044 * 9 8 7 11 11 N 1.34778 * 120.00086 * 76.08395 * 9 8 7 12 12 C 1.46498 * 120.00242 * 5.03682 * 11 9 8 13 13 C 1.46502 * 119.99970 * 185.04230 * 11 9 8 14 14 H 1.09000 * 110.88941 * 356.11064 * 13 11 9 15 15 C 1.55153 * 111.00750 * 119.99990 * 13 11 9 16 16 C 1.54317 * 102.94337 * 82.57017 * 15 13 11 17 17 N 1.47021 * 107.27447 * 22.19296 * 16 15 13 18 18 C 1.36935 * 125.65050 * 181.02535 * 17 16 15 19 19 H 1.08001 * 119.99832 * 185.14864 * 18 17 16 20 20 C 1.38809 * 119.99937 * 5.13761 * 18 17 16 21 21 N 1.31619 * 120.00178 * 5.09201 * 20 18 17 22 22 Si 1.86798 * 119.99874 * 185.35854 * 20 18 17 23 23 H 1.48503 * 109.47567 * 264.73057 * 22 20 18 24 24 H 1.48499 * 109.47194 * 24.73254 * 22 20 18 25 25 H 1.48506 * 109.47134 * 144.73192 * 22 20 18 26 26 C 1.47422 * 108.70073 * 1.28636 * 17 16 15 27 27 H 1.08997 * 109.47359 * 299.99957 * 1 2 3 28 28 H 1.08999 * 109.47297 * 60.00584 * 1 2 3 29 29 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46932 * 239.99719 * 2 1 3 31 31 H 1.09010 * 109.46522 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47069 * 299.99535 * 3 2 1 33 33 H 1.08999 * 109.46830 * 60.00346 * 3 2 1 34 34 H 1.07999 * 124.71523 * 179.76873 * 6 5 4 35 35 H 1.09001 * 109.47109 * 264.79528 * 12 11 9 36 36 H 1.09006 * 109.46834 * 24.79134 * 12 11 9 37 37 H 1.09000 * 109.47251 * 144.79092 * 12 11 9 38 38 H 1.09002 * 110.71939 * 324.20436 * 15 13 11 39 39 H 1.09002 * 110.87191 * 201.00552 * 15 13 11 40 40 H 1.09001 * 109.88018 * 262.77129 * 16 15 13 41 41 H 1.09008 * 110.01351 * 141.68564 * 16 15 13 42 42 H 0.96998 * 120.00037 * 180.26994 * 21 20 18 43 43 H 1.09008 * 110.36322 * 94.48229 * 26 17 16 44 44 H 1.08997 * 110.37213 * 216.80143 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 16 1.6099 -0.3279 2.8422 6 6 2.6079 -1.5797 3.4365 7 7 3.1804 -2.2005 2.4660 8 6 2.8883 -1.7569 1.2405 9 6 3.4513 -2.3483 0.0149 10 8 4.3418 -1.7750 -0.5834 11 7 2.9799 -3.5246 -0.4438 12 6 1.8347 -4.1607 0.2120 13 6 3.6128 -4.1673 -1.5982 14 1 4.4015 -3.5375 -2.0097 15 6 4.1598 -5.5700 -1.2233 16 6 2.9106 -6.4692 -1.3344 17 7 1.9571 -5.7845 -2.2196 18 6 0.7128 -6.2436 -2.5599 19 1 0.1186 -5.7066 -3.2845 20 6 0.2152 -7.3994 -1.9738 21 7 0.8949 -7.9983 -1.0190 22 14 -1.4156 -8.1088 -2.5454 23 1 -2.5045 -7.6223 -1.6606 24 1 -1.6815 -7.6766 -3.9410 25 1 -1.3573 -9.5917 -2.4890 26 6 2.5651 -4.5248 -2.6851 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.7404 -1.8168 4.4818 35 1 2.1914 -4.8885 0.9407 36 1 1.2384 -3.4017 0.7185 37 1 1.2220 -4.6650 -0.5353 38 1 4.5478 -5.5729 -0.2047 39 1 4.9280 -5.8883 -1.9280 40 1 2.4664 -6.6099 -0.3490 41 1 3.1830 -7.4353 -1.7593 42 1 0.5490 -8.8080 -0.6122 43 1 3.0510 -4.6718 -3.6498 44 1 1.8098 -3.7421 -2.7553 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033581835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:57 Heat of formation + Delta-G solvation = 20.666492 kcal Electronic energy + Delta-G solvation = -26438.890458 eV Core-core repulsion = 22904.311902 eV Total energy + Delta-G solvation = -3534.578556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89806 -40.27920 -38.84007 -36.81679 -35.88789 -34.04448 -31.39648 -30.73648 -29.50407 -28.12221 -27.69957 -26.91267 -26.09369 -23.97718 -22.54657 -21.96959 -21.33424 -19.76232 -18.96470 -18.90062 -18.26517 -17.61551 -16.68365 -16.60880 -16.04485 -15.79882 -15.62065 -15.29180 -15.22172 -14.77144 -14.58112 -14.32778 -14.03440 -13.86962 -13.55018 -13.43496 -13.22403 -13.13239 -13.05211 -12.85985 -12.75351 -12.50025 -12.40624 -12.26108 -12.08143 -11.99593 -11.88654 -11.83210 -11.58559 -11.13764 -10.74679 -10.72792 -10.40189 -9.86217 -9.80136 -8.80287 -7.80560 -5.18659 -0.37665 0.30206 0.62961 1.18286 1.48364 1.50013 1.57389 1.58532 2.00160 2.50893 3.19691 3.37477 3.46107 3.62719 3.77409 3.83319 3.92039 4.03496 4.09615 4.19491 4.26074 4.31486 4.44671 4.56320 4.64888 4.66290 4.69983 4.81558 4.84331 4.86352 4.88655 4.90814 4.99639 5.06799 5.15225 5.22449 5.28592 5.46864 5.48928 5.62779 5.80443 6.20350 6.27322 6.51697 6.91082 7.11265 7.76893 8.42084 9.27182 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004080 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.138964 B = 6861.677017 C = 7239.978098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.217 4.217 5 S 0.286 5.714 6 C -0.009 4.009 7 N -0.474 5.474 8 C -0.007 4.007 9 C 0.596 3.404 10 O -0.570 6.570 11 N -0.574 5.574 12 C 0.098 3.902 13 C 0.130 3.870 14 H 0.109 0.891 15 C -0.141 4.141 16 C 0.183 3.817 17 N -0.613 5.613 18 C -0.238 4.238 19 H 0.081 0.919 20 C -0.054 4.054 21 N -0.943 5.943 22 Si 0.971 3.029 23 H -0.286 1.286 24 H -0.272 1.272 25 H -0.298 1.298 26 C 0.129 3.871 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.238 0.762 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.038 0.962 41 H -0.002 1.002 42 H 0.246 0.754 43 H 0.046 0.954 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 18.780 8.781 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 C -0.195 4.195 4 C -0.341 4.341 5 S 0.542 5.458 6 C -0.307 4.307 7 N -0.189 5.189 8 C -0.142 4.142 9 C 0.381 3.619 10 O -0.449 6.449 11 N -0.304 5.304 12 C -0.045 4.045 13 C 0.025 3.975 14 H 0.127 0.873 15 C -0.180 4.180 16 C 0.058 3.942 17 N -0.340 5.340 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.248 4.248 21 N -0.592 5.592 22 Si 0.800 3.200 23 H -0.213 1.213 24 H -0.197 1.197 25 H -0.225 1.225 26 C 0.003 3.997 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.017 0.983 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.711 19.138 9.136 21.219 hybrid contribution -0.070 -1.743 -1.015 2.018 sum -0.782 17.395 8.121 19.214 Atomic orbital electron populations 1.21926 0.91657 1.02361 1.04054 1.19755 0.97386 0.96534 0.91151 1.21865 1.00798 0.92924 1.03949 1.25802 1.02993 1.00998 1.04277 1.82215 1.40904 1.30694 0.91960 1.28999 0.99198 0.98092 1.04435 1.66952 1.24734 1.29251 0.97969 1.19943 1.03060 0.98833 0.92363 1.17560 0.81050 0.80124 0.83135 1.90731 1.31966 1.62143 1.60099 1.47621 1.32046 1.20104 1.30625 1.21763 0.87603 0.96838 0.98312 1.22258 0.95542 0.93705 0.85969 0.87277 1.23105 0.98499 0.94622 1.01776 1.20999 0.86926 0.91815 0.94422 1.44716 1.14344 1.20092 1.54836 1.19322 0.91626 1.06837 1.18908 0.90143 1.25499 1.01698 0.98949 0.98681 1.70157 1.39869 1.20847 1.28310 0.85178 0.79779 0.76981 0.78059 1.21291 1.19688 1.22481 1.22014 0.94335 0.88460 0.94931 0.90321 0.90100 0.93379 0.92183 0.93676 0.90081 0.90408 0.74583 0.94169 0.92005 0.89052 0.91465 0.89306 0.94412 0.98348 0.94437 0.93648 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.05 71.98 0.65 -1.88 16 2 C -0.03 -0.62 3.19 -11.54 -0.04 -0.65 16 3 C -0.14 -2.44 9.16 71.98 0.66 -1.79 16 4 C -0.22 -5.41 5.03 24.99 0.13 -5.29 16 5 S 0.29 4.57 22.44 -56.49 -1.27 3.30 16 6 C -0.01 -0.18 12.17 130.71 1.59 1.41 16 7 N -0.47 -14.34 10.68 -193.03 -2.06 -16.40 16 8 C -0.01 -0.22 4.53 40.55 0.18 -0.04 16 9 C 0.60 22.77 6.38 86.62 0.55 23.32 16 10 O -0.57 -24.29 16.50 -4.15 -0.07 -24.36 16 11 N -0.57 -22.12 2.91 -818.42 -2.38 -24.50 16 12 C 0.10 3.86 8.51 127.77 1.09 4.95 16 13 C 0.13 4.98 3.67 46.46 0.17 5.15 16 14 H 0.11 4.06 7.02 -2.39 -0.02 4.04 16 15 C -0.14 -5.53 6.48 31.78 0.21 -5.33 16 16 C 0.18 8.89 4.41 86.73 0.38 9.28 16 17 N -0.61 -30.09 1.89 -691.54 -1.30 -31.40 16 18 C -0.24 -12.70 9.79 84.03 0.82 -11.88 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.05 -2.96 5.46 84.86 0.46 -2.50 16 21 N -0.94 -54.43 10.40 21.65 0.23 -54.20 16 22 Si 0.97 44.32 29.56 68.60 2.03 46.35 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 C 0.13 5.28 6.39 86.93 0.56 5.84 16 27 H 0.08 1.05 7.84 -2.39 -0.02 1.04 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.72 7.17 -2.39 -0.02 1.71 16 31 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.24 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.04 1.68 7.62 -2.39 -0.02 1.66 16 36 H 0.06 2.19 6.79 -2.38 -0.02 2.18 16 37 H 0.09 4.19 5.10 -2.39 -0.01 4.18 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.04 2.03 5.81 -2.39 -0.01 2.02 16 41 H 0.00 -0.09 7.89 -2.38 -0.02 -0.11 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.46 362.63 3.58 -65.88 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.00 Total: 14.74 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 7.41 Total: 20.59 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.53 Total: -126.50 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.27 Total: 3.30 kcal Total: -69.46 3.58 -65.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033581835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.546 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds