Wall clock time and date at job start Tue Mar 31 2020 14:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09001 * 109.49596 * 54.92976 * 3 2 1 5 5 C 1.53194 * 109.51974 * 294.85054 * 3 2 1 6 6 N 1.46924 * 108.77334 * 185.39638 * 5 3 2 7 7 C 1.34787 * 120.63033 * 233.88527 * 6 5 3 8 8 O 1.21282 * 119.99956 * 359.72115 * 7 6 5 9 9 C 1.50697 * 119.99793 * 179.72182 * 7 6 5 10 10 C 1.50697 * 109.46861 * 180.02562 * 9 7 6 11 11 C 1.33636 * 122.75439 * 124.73485 * 10 9 7 12 12 S 1.76200 * 107.92742 * 179.97438 * 11 10 9 13 13 C 1.70971 * 90.28160 * 0.27280 * 12 11 10 14 14 N 1.29031 * 110.16965 * 359.84182 * 13 12 11 15 15 C 1.46926 * 118.73991 * 53.61035 * 6 5 3 16 16 C 1.53185 * 108.77524 * 306.39104 * 15 6 5 17 17 C 1.53038 * 109.49766 * 175.00086 * 3 2 1 18 18 H 1.08994 * 109.46487 * 61.32751 * 17 3 2 19 19 N 1.46502 * 109.44869 * 301.35859 * 17 3 2 20 20 C 1.36934 * 120.00137 * 154.94188 * 19 17 3 21 21 H 1.07996 * 119.99786 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99956 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00167 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99656 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47066 * 90.00123 * 24 22 20 26 26 H 1.48504 * 109.46712 * 210.00156 * 24 22 20 27 27 H 1.48497 * 109.47477 * 329.99975 * 24 22 20 28 28 H 1.09005 * 109.47169 * 60.00370 * 1 2 3 29 29 H 1.09003 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47050 * 300.00581 * 1 2 3 31 31 H 1.08998 * 109.47050 * 239.99419 * 2 1 3 32 32 H 1.09005 * 109.47169 * 119.99629 * 2 1 3 33 33 H 1.09004 * 109.58535 * 65.60978 * 5 3 2 34 34 H 1.08994 * 109.59149 * 305.18455 * 5 3 2 35 35 H 1.08997 * 109.47228 * 299.99525 * 9 7 6 36 36 H 1.08997 * 109.47248 * 60.00068 * 9 7 6 37 37 H 1.08002 * 126.03431 * 0.03143 * 11 10 9 38 38 H 1.08003 * 124.91773 * 179.84185 * 13 12 11 39 39 H 1.09001 * 109.58178 * 66.18066 * 15 6 5 40 40 H 1.09004 * 109.58598 * 186.60071 * 15 6 5 41 41 H 1.08998 * 109.50031 * 174.58725 * 16 15 6 42 42 H 1.09001 * 109.49616 * 294.65180 * 16 15 6 43 43 H 0.97000 * 119.99471 * 334.94056 * 19 17 3 44 44 H 0.97001 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6386 2.1274 -1.3102 6 7 2.2451 3.4650 -1.3497 7 6 1.4849 4.5578 -1.5607 8 8 0.2889 4.4419 -1.7252 9 6 2.1210 5.9235 -1.5922 10 6 1.0613 6.9656 -1.8417 11 6 0.8660 8.0074 -1.0279 12 16 -0.4569 8.9682 -1.6849 13 6 -0.6211 7.8691 -2.9842 14 7 0.2472 6.9206 -2.8770 15 6 3.6953 3.5893 -1.1487 16 6 4.0736 2.8881 0.1596 17 6 3.5652 1.4449 0.1257 18 1 4.0009 0.9264 -0.7283 19 7 3.9539 0.7614 1.3618 20 6 5.1915 0.1844 1.4652 21 1 5.8808 0.2329 0.6353 22 6 5.5599 -0.4627 2.6366 23 7 4.7195 -0.5223 3.6479 24 14 7.2479 -1.2504 2.7772 25 1 8.2137 -0.2586 3.3147 26 1 7.1749 -2.4170 3.6932 27 1 7.6969 -1.7018 1.4357 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5533 2.2167 -1.3582 34 1 1.9965 1.5388 -2.1549 35 1 2.6058 6.1207 -0.6360 36 1 2.8626 5.9606 -2.3901 37 1 1.4215 8.2229 -0.1271 38 1 -1.3465 7.9561 -3.7796 39 1 4.2209 3.1200 -1.9803 40 1 3.9670 4.6433 -1.0903 41 1 5.1577 2.8893 0.2727 42 1 3.6196 3.4146 0.9991 43 1 3.3346 0.7176 2.1071 44 1 4.9772 -0.9742 4.4666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037932010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:38 Heat of formation + Delta-G solvation = 17.311543 kcal Electronic energy + Delta-G solvation = -25358.665727 eV Core-core repulsion = 21823.941689 eV Total energy + Delta-G solvation = -3534.724038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53334 -39.50148 -37.61879 -34.69585 -33.81094 -32.33702 -31.70008 -29.51313 -29.26123 -27.89936 -25.35641 -24.62034 -23.79616 -22.75994 -20.82556 -20.30626 -19.60534 -19.10735 -17.91649 -17.18501 -17.01607 -16.09100 -15.67254 -15.16090 -14.99023 -14.50957 -14.06658 -13.92490 -13.73380 -13.53728 -13.42821 -13.28521 -13.07577 -13.01112 -12.78178 -12.27466 -12.05870 -11.78104 -11.59865 -11.56539 -11.27276 -10.94221 -10.85977 -10.69727 -10.33005 -10.21649 -10.13877 -9.81689 -9.76187 -9.70065 -9.59006 -9.55031 -9.01913 -8.90540 -8.40653 -6.97916 -5.79201 -3.07848 0.53917 1.20737 1.52497 2.58532 2.78354 3.21750 3.40699 3.46346 3.47937 3.98718 4.55752 4.60487 4.71304 4.94262 5.05792 5.06856 5.21441 5.25906 5.27582 5.36795 5.46671 5.47590 5.58365 5.60992 5.69822 5.71829 5.88308 5.93700 6.03741 6.14949 6.17338 6.32355 6.37273 6.41779 6.47069 6.59511 6.69591 6.83539 6.97037 7.06118 7.55402 7.60301 7.67068 8.33117 8.39043 9.50520 10.08154 10.43024 11.43237 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.002735 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.811974 B =10234.796750 C =10961.292293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.609 5.609 7 C 0.519 3.481 8 O -0.531 6.531 9 C -0.068 4.068 10 C 0.086 3.914 11 C -0.251 4.251 12 S 0.105 5.895 13 C 0.024 3.976 14 N -0.443 5.443 15 C 0.106 3.894 16 C -0.152 4.152 17 C 0.184 3.816 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.178 0.822 38 H 0.198 0.802 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 17.036 -12.045 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.342 5.342 7 C 0.306 3.694 8 O -0.407 6.407 9 C -0.110 4.110 10 C -0.047 4.047 11 C -0.390 4.390 12 S 0.357 5.643 13 C -0.275 4.275 14 N -0.155 5.155 15 C -0.017 4.017 16 C -0.193 4.193 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.196 0.804 38 H 0.215 0.785 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.054 17.376 -12.291 23.129 hybrid contribution 1.508 -1.045 0.667 1.952 sum -7.546 16.331 -11.623 21.418 Atomic orbital electron populations 1.21841 0.96843 1.00999 1.01295 1.21448 0.94353 0.95748 1.03426 1.21781 0.97594 0.96238 0.96794 0.91309 1.21711 0.99394 0.81430 0.97612 1.48146 1.08418 1.06663 1.70983 1.20186 0.87024 0.85504 0.76681 1.90699 1.14734 1.86315 1.49000 1.20285 0.95899 0.90047 1.04773 1.19693 0.97781 0.95857 0.91332 1.26815 1.04721 1.00708 1.06803 1.83963 1.30182 1.29059 1.21092 1.28390 1.02324 0.93935 1.02818 1.66037 1.04533 1.22926 1.22038 1.21881 0.79571 1.01023 0.99259 1.22688 1.02187 0.99348 0.95112 1.20181 0.90822 0.90514 0.91166 0.93429 1.42417 1.16475 1.64432 1.12740 1.19209 0.91799 1.27302 0.98561 0.91245 1.24725 0.98109 1.01563 0.96472 1.69658 1.35156 1.48461 1.04737 0.86234 0.84144 0.78770 0.77290 1.21813 1.21844 1.20803 0.93218 0.93192 0.93046 0.92475 0.89821 0.89258 0.91800 0.87169 0.87227 0.80430 0.78538 0.91402 0.90585 0.90565 0.92208 0.78215 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.80 5.33 -3.71 -0.02 1.78 16 6 N -0.61 -8.52 2.97 -172.77 -0.51 -9.03 16 7 C 0.52 7.62 7.66 -10.98 -0.08 7.53 16 8 O -0.53 -9.75 14.86 5.56 0.08 -9.67 16 9 C -0.07 -0.74 4.54 -29.04 -0.13 -0.87 16 10 C 0.09 1.03 5.64 -84.23 -0.47 0.56 16 11 C -0.25 -2.44 11.07 29.12 0.32 -2.11 16 12 S 0.10 0.87 23.22 -107.50 -2.50 -1.63 16 13 C 0.02 0.24 12.23 51.59 0.63 0.87 16 14 N -0.44 -5.85 9.68 -11.90 -0.12 -5.97 16 15 C 0.11 1.30 6.34 -3.71 -0.02 1.28 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 N -0.72 -16.95 4.33 -53.39 -0.23 -17.18 16 20 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 24 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.63 7.21 -51.93 -0.37 1.25 16 33 H 0.09 1.42 5.73 -51.93 -0.30 1.12 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.94 7.58 -51.93 -0.39 0.55 16 36 H 0.11 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.38 9.81 7.51 -40.82 -0.31 9.51 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -32.86 366.06 -8.97 -41.84 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.63 Total: 8.82 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.28 Total: -2.82 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.14 Total: -58.86 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.86 -8.97 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037932010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.149 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds